TCONS_00050203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050203
Unique NameTCONS_00050203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050203 ID=TCONS_00050203|Name=TCONS_00050203|organism=Clytia hemisphaerica|type=transcript|length=414bp
GTCAGGGTATTAAGCATCAGCACCAGTTGTCACTGCTTTAACTGCTTTAC
TAATGAACCTTCGTTTATAGCTTGATATTTAAATGAAGGTTCAttagtct
tacatccctgtttcaTGTGATTAAATAGTAAAATGACTTCAAGTTTATTG
ATACatgacggaatttcgctaaatatcaagcTATAAATGAAGGCTCATTA
GTCTCACATCCCTGTttcattctttgaaaaagtAGAATGGCTTCAAAGTT
TATTGATTgatgtggctggttgtggctggttgcgtATTTTAGTATTACCC
AATGTTTTTCATCGACCCCTTGATATAGGATAGGAATAATtgtatttttt
agcattttcgtTTCAACTTAACACTTTTTCTTTGTCAAAACTTTTATTAG
TATTTTAACGTATa
Run BLAST on NCBI

transcript from alignment at scaffold_167:1880945..1881358

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050203 ID=TCONS_00050203|Name=TCONS_00050203|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_167:1880945..1881358 (Clytia hemisphaerica)
tATACGTTAAAATACTAATAAAAGTTTTGACAAAGAAAAAGTGTTAAGTT
GAAacgaaaatgctaaaaaatacaATTATTCCTATCCTATATCAAGGGGT
CGATGAAAAACATTGGGTAATACTAAAATacgcaaccagccacaaccagc
cacatcAATCAATAAACTTTGAAGCCATTCTactttttcaaagaatgaaA
CAGGGATGTGAGACTAATGAGCCTTCATTTATAgcttgatatttagcgaa
attccgtcatGTATCAATAAACTTGAAGTCATTTTACTATTTAATCACAt
gaaacagggatgtaagactaaTGAACCTTCATTTAAATATCAAGCTATAA
ACGAAGGTTCATTAGTAAAGCAGTTAAAGCAGTGACAACTGGTGCTGATG
CTTAATACCCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031808XLOC_031808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050203-exon-scaffold_167-1491911889:1880945..1881358TCONS_00050203-exon-scaffold_167-1491911889:1880945..1881358Clytia hemisphaericaexon
TCONS_00050203-exon-scaffold_167-1510915933:1880945..1881358TCONS_00050203-exon-scaffold_167-1510915933:1880945..1881358Clytia hemisphaericaexon
TCONS_00050203-exon-scaffold_167-1575043694:1880945..1881358TCONS_00050203-exon-scaffold_167-1575043694:1880945..1881358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1880945..1881358 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346124	0.168763	0	0.191706	0.237461	0.737693	0	0	0.145836	0.213256	0	0.230517	0	0	0.294811	0.112964	0.129917	0	0.367938	0.225032	1.17128	1.22424	0.595289	0.203201	0.185809	0.331661	0.237303	0.253256	0.192086	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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