TCONS_00050238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050238
Unique NameTCONS_00050238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050238 ID=TCONS_00050238|Name=TCONS_00050238|organism=Clytia hemisphaerica|type=transcript|length=384bp
CACACGCGTTAGATCACACGGTATACAGCAAATTATAAAAGTGATATTGA
TGATTCGTGGGAAATAAATGGCATAATGGAGAATTCCGTTAGAGGGAACA
GAAGTTTACAGGGAGCACTGGTTGGACAAATTCTGGAAGACGTTCTTGGA
TAGACAGTCAGCCCATTGATGGAGTTCATAAGTTGAAAACTTGATTAAAC
ACGGCAAGAAAATTGTCCGGTCATCGTCAAAGCGCTTTGAATTAAACAAC
CACAACTGTATCCGGAGCTTATAAGTATGAAATTTCTTCTATTATACCGG
GTGGTCCAGAAAAAACATGTCGAAACTTATAACGTAGATATCTCGAGAAG
TAATTGTCAAAAATCACTCAAATTTTctacattt
Run BLAST on NCBI

transcript from alignment at scaffold_168:22353..23753-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050238 ID=TCONS_00050238|Name=TCONS_00050238|organism=Clytia hemisphaerica|type=transcript|length=1401bp|location=Sequence derived from alignment at scaffold_168:22353..23753- (Clytia hemisphaerica)
CACACGCGTTAGATCACACGGTATACAGCAAATTATAAAAGTAAATTTAT
TTCGTGCTTGGAAGTTTTTACTTGGTTTTATGCCTTTTATCGTCGTTCTT
TATACTGTTTTTTCAAAACTAAGAAAGATATTATTGGCGTAGCATATGTC
TTCTTCCTAGCCATTAAATAAGGCTACATCTTGTCCATTTCCAGCTTTTT
GACAATAATATTTGTGTTTTAGGTGATATTGATGATTCGTGGGAAATAAA
TGGCATAATGGAGAATTCCGTTAGAGGGAACAGAAGTTTACAGGTAAGTC
TTAGACAAGATTGAAACCCTGCACAAAATGTTTCTATTGAACAATGAAAG
TTGCTTTACCTTACGTACAGGGAGCACCCGTCTCAATTTTCCGTCAACCA
TGTTTTGGTCGATTAGTTTATATGCTTAAAATTTGATGGGGCCGGTTGAG
AATATCTATTGAAAAAACACCTGTCTCAGTGAACCGATGCAGTTTTTCAA
ACCACTGGGGTGGCTATACAATAAGAAATTTCATTTTTTTGTAAAAGCAA
CTCCAATTTTGGGTCAGGGCCTGGATTGCTTAGTTTTTAGCTCATTTTAT
GTAAAATTTGCTTTGACCACCCCTAATATTATACATTTTTATGCTTATTG
GGTCAAGGGCTATCATTATTGCCATTGTTAGATCATTTAAGAAACTTTTA
CTTATTAGCAACCTGGTTGCTTAAGATGAAGAATGTGTAATAAATTTGAT
CTTAAGATCATTGGGGTTAGGGTGAGAGACTTTAACTCGCCTTTTGCCGG
AGTGAGGAAAACATATTTCATTTCAAAGCATTACTTTTTTCAATTTTTAC
AAGGCTGCTCTAATTGCGTTTTTGACCGGGAGAAAACAATACTATTTCAA
AATTTTGGTCGGGGTAAGAAATTTCAATAAAATTTGACCAGGTCTGAACT
TGTCTTCCAACGAAAACTTAAAATCAGTTAGGTCAATTTTGGCAATTTAT
TTCACCAGGTTATCCAGCGAGATGGATCTCACTGGATCACTGATAGTGAT
ACAGGAAGTGGAAGACGAACGCAATGAAGTAGTTTCATATCAAAATCCTT
TTAATTTATTCGTCGTCTTTTATTAAAGGGAGCACTGGTTGGACAAATTC
TGGAAGACGTTCTTGGATAGACAGTCAGCCCATTGATGGAGTTCATAAGT
TGAAAACTTGATTAAACACGGCAAGAAAATTGTCCGGTCATCGTCAAAGC
GCTTTGAATTAAACAACCACAACTGTATCCGGAGCTTATAAGTATGAAAT
TTCTTCTATTATACCGGGTGGTCCAGAAAAAACATGTCGAAACTTATAAC
GTAGATATCTCGAGAAGTAATTGTCAAAAATCACTCAAATTTTCTACATT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031824XLOC_031824Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050238-exon-scaffold_168-1575043694:23714..23753TCONS_00050238-exon-scaffold_168-1575043694:23714..23753Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1575043694:23461..23531TCONS_00050238-exon-scaffold_168-1575043694:23461..23531Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1575043694:22353..22625TCONS_00050238-exon-scaffold_168-1575043694:22353..22625Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1510915933:23714..23753TCONS_00050238-exon-scaffold_168-1510915933:23714..23753Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1510915933:23461..23531TCONS_00050238-exon-scaffold_168-1510915933:23461..23531Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1510915933:22353..22625TCONS_00050238-exon-scaffold_168-1510915933:22353..22625Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1491911889:23714..23753TCONS_00050238-exon-scaffold_168-1491911889:23714..23753Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1491911889:23461..23531TCONS_00050238-exon-scaffold_168-1491911889:23461..23531Clytia hemisphaericaexon
TCONS_00050238-exon-scaffold_168-1491911889:22353..22625TCONS_00050238-exon-scaffold_168-1491911889:22353..22625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:22353..23753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40546	0.515056	0.459082	0.898281	5.19446	3.02454	12.7714	14.1525	6.15012	9.26554	2.8755	2.543	2.2921	1.68026	0.460467	0.61769	0.456566	0.779942	0	0.676536	0.784043	0.286822	0.697339	0.633982	7.18285	12.6268	0.555966	1.18668	0.450029	0.687762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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