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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050240 ID=TCONS_00050240|Name=TCONS_00050240|organism=Clytia hemisphaerica|type=transcript|length=1525bp
AAATAAAAAAGAAgtggtgaatctggcattcttggcaaatttggaactta
cctccatacgtctccatacaaaacactgttcccacgagatctgtgttctt
ttcgctccaattttgccaattttgccaaatttattCGTGGAAAATAAAAT
GTGACGTTTGCATAATTAAGACATACAAATTAATTATTTTCGTACGAAAT
TGAACATAGTTGGCCTgaacacaaaaataaaattacgCACAAATACAAGG
GACTTTTTTTTATCGTGTTAAGGCCAACCCAGGCTACATGTAAACAAAGt
tgaaaccaaaacaaaaaattcgaaagattttttttggttttttgactGTT
GACCTGTTGACTGTTCACTGTTCACTTCTGCATCTTCACAAAATGAACTC
AGGAAAGCCAAGAAAACCTACAGGTCAATACGACTATGGAGATGATTCCA
GTCAAGATACACAAAGCTACGAAACCATTGATGAAATGGAATTGAACAGG
TTGGGGATGGGTATCTACCCTGAGGAGTTTGTTGATGATGATGGGTACAG
TGATGAAGGAAGTAGTGATTTGAGCCAACCTATGACCAGCCAGCCTTCAA
GCCAAATCAAAAAACACAGCCTGAAAATGGTGATTAAGGCTCCACCTTCA
GACCCGAatggaaaacaaagaaaacgcaAGAAGAAAAGCAAgcaacaaac
aaaagaaaatgacgAGCCGCCAGCTAAACTAAATAAAAAGGTGGAAAAGG
AACTAAAGGAACCCTATTACTTTTCGGATGCTGCTACCACTTCCCTTTTG
GAGGCATACAAAAACTGCACCCCATTGATGTCTTCTggaaaatacagaaa
aaaacaGaTTTGGCAGAAGATTGCTCAAGACTTGAGGTGCAAACTTGTTA
ACGCTGGTGCCACCGCCTTTCCATCAAGTGACCAGTGCATGCAGCGTCAT
CGAACCGTCATCAAAGCCTTCAAACAAACGAAGAACTTGAATCGTGAAAG
TGGTCAAGGCAGGGCTACTTGCAAATTCCAAGACGAACTCAACGACCTTG
AAGGTCACAAACCTGACGTAGTACCAGATTACACCATGGCCTCTACAGGT
GAGGTTACACGTAGAAATTCAAACAAGGATGACCAAGAGGTCCCATCTAC
ATCAGCTAGCACTGCACAACAATCAACCCCACCACCAAAAGTAAAGTCAA
AGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAatggtaattttcatg
gaaagaTATGAGGAGAGGAAGGCAAAGCGAGATGAGGCATTAatgaagag
aaaagaaacattACATGCAGCAAGTATGGCAATGATGGATAAATTAATTG
ACAAGTTATAACTTTTTTTGAGTAGCATTATTTAACCGTCAANCTACCAC
TTCCCTTTTGGAGGCATACAAAAACTGCACCCCATTGATGTCTTCTggaa
aatacagaaaaaaacaGaTTTGGCAGAAGATTGCTCAAGACTTGAGGTGC
AAACTTGTTAACGCTGGTGCCACCG Run BLAST on NCBI protein sequence of TCONS_00050240-protein >TCONS_00050240-protein ID=TCONS_00050240-protein|Name=TCONS_00050240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MNSGKPRKPTGQYDYGDDSSQDTQSYETIDEMELNRLGMGIYPEEFVDDD
GYSDEGSSDLSQPMTSQPSSQIKKHSLKMVIKAPPSDPNGKQRKRKKKSK
QQTKENDEPPAKLNKKVEKELKEPYYFSDAATTSLLEAYKNCTPLMSSGK
YRKKQIWQKIAQDLRCKLVNAGATAFPSSDQCMQRHRTVIKAFKQTKNLN
RESGQGRATCKFQDELNDLEGHKPDVVPDYTMASTGEVTRRNSNKDDQEV
PSTSASTAQQSTPPPKVKSKPKPKEGRRRNEMVIFMERYEERKAKRDEAL
MKRKETLHAASMAMMDKLIDKL Run BLAST on NCBI transcript from alignment at scaffold_168:30562..32556- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050240 ID=TCONS_00050240|Name=TCONS_00050240|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at scaffold_168:30562..32556- (Clytia hemisphaerica)
AAATAAAAAAGAAGTGGTGAATCTGGCATTCTTGGCAAATTTGGAACTTA
CCTCCATACGTCTCCATACAAAACACTGTTCCCACGAGATCTGTGTTCTT
TTCGCTCCAATTTTGCCAATTTTGCCAAATTTATTCGTGGAAAATAAAAT
GTGACGTTTGCATAATTAAGACATACAAATTAATTATTTTCGTACGAAAT
TGAACATAGTTGGCCTGAACACAAAAATAAAATTACGCACAAATACAAGG
GACTTTTTTTTATCGTGTTAAGGCCAACCCAGGCTACATGTAAACAAAGT
TGAAACCAAAACAAAAAATTCGAAAGATTTTTTTTGGTTTTTTGACTGTT
GACCTGTTGACTGTTCACTGTTCACTTCTGCATCTTCACAAAATGAACTC
AGGAAAGCCAAGAAAACCTACAGGTCAATACGACTATGGAGATGATTCCA
GTCAAGATACACAAAGCTACGAAACCATTGATGAAATGGAATTGAACAGG
TTGGGGATGGGTATCTACCCTGAGGAGTTTGTTGATGATGATGGGTACAG
TGATGAAGGAAGTAGTGATTTGAGCCAACCTATGACCAGCCAGCCTTCAA
GCCAAATCAAAAAACACAGCCTGAAAATGGTGATTAAGGCTCCACCTTCA
GACCCGAATGGAAAACAAAGAAAACGCAAGAAGAAAAGCAAGCAACAAAC
AAAAGAAAATGACGAGCCGCCAGCTAAACTAAATAAAAAGGTGGAAAAGG
AACTAAAGGAACCCTATTACTTTTCGGATGCTGCTACCACTTCCCTTTTG
GAGGCATACAAAAACTGCACCCCATTGATGTCTTCTGGAAAATACAGAAA
AAAACAGGTAACTGCTCTTTTTTTTTCATAGCTATTATTATATATAGATC
AGTGGCATAGTTCTGATCGATCTTCAACTTCTTGGCAAAAGGCTTTAGTG
ATGCGAAAATTCAAATCCTTCTAAAATTTGATAAATCCTCTTTTTAAATT
CCAAAAATCTGCTTACTGTATGTTTATTTTTTGCATTGAAAGTTTGATTC
ATTCAGTTTTTTTCTGATTATGGATTTTATTATTTTTCTTCAGATTTGGC
AGAAGATTGCTCAAGACTTGAGGTGCAAACTTGTTAACGCTGGTGCCACC
GCCTTTCCATCAAGTGACCAGTGCATGCAGCGTCATCGAACCGTCATCAA
AGCCTTCAAACAAACGAAGAACTTGAATCGTGAAAGTGGTCAAGGCAGGG
CTACTTGCAAATTCCAAGACGAACTCAACGACCTTGAAGGTCACAAACCT
GACGTAGTACCAGATTACACCATGGCCTCTACAGGTGAGGTTACACGTAG
AAATTCAAACAAGGATGACCAAGAGGTCCCATCTACATCAGCTAGCACTG
CACAACAATCAACCCCACCACCAAAAGTAAAGTCAAAGCCCAAACCGAAA
GAAGGAAGAAGGAGAAATGAAATGGTAATTTTCATGGAAAGATATGAGGA
GAGGAAGGCAAAGCGAGATGAGGCATTAATGAAGAGAAAAGAAACATTAC
ATGCAGCAAGTATGGCAATGATGGATAAATTAATTGACAAGTTATAACTT
TTTTTGAGTAGCATTATTTAACCGTCAANCTACCACTTCCCTTTTGGAGG
CATACAAAAACTGCACCCCATTGATGTCTTCTGGAAAATACAGAAAAAAA
CAGGTAACTGCTCTTTTTTTTCATAGCTATTATATATTATATATAGTGGT
ATAGTTCTGATCGATCTTCAACTTCTTGGCAAAAGGCTTTAGTGATGCGA
AAATAAAAATCCTTCTAAAATTTGATAAATCCTCTTTTTAAATTCCAAAA
ATCTGCTTACTGTATGTTTATTTTTTGCATTGAAAGTTTGATTTATTCAG
TTTTTTTCTGATTATGGATTTTATTATTTTTCTTCAGATTTGGCAGAAGA
TTGCTCAAGACTTGAGGTGCAAACTTGTTAACGCTGGTGCCACCG Coding sequence (CDS) from alignment at scaffold_168:30562..32556- >TCONS_00050240 ID=TCONS_00050240|Name=TCONS_00050240|organism=Clytia hemisphaerica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_168:30562..32556- (Clytia hemisphaerica)
ATTTGGCAGAAGATTGCTCAAGACTTGAGGTGCAAACTTGTTAACGCTGG
TGCCACCGCCTTTCCATCAAGTGACCAGTGCATGCAGCGTCATCGAACCG
TCATCAAAGCCTTCAAACAAACGAAGAACTTGAATCGTGAAAGTGGTCAA
GGCAGGGCTACTTGCAAATTCCAAGACGAACTCAACGACCTTGAAGGTCA
CAAACCTGACGTAGTACCAGATTACACCATGGCCTCTACAGGTGAGGTTA
CACGTAGAAATTCAAACAAGGATGACCAAGAGGTCCCATCTACATCAGCT
AGCACTGCACAACAATCAACCCCACCACCAAAAGTAAAGTCAAAGCCCAA
ACCGAAAGAAGGAAGAAGGAGAAATGAAATGGTAATTTTCATGGAAAGAT
ATGAGGAGAGGAAGGCAAAGCGAGATGAGGCATTAATGAAGAGAAAAGAA
ACATTACATGCAGCAAGTATGGCAATGATGGATAAATTAATTGACAAGTT
ATAAATGAACTCAGGAAAGCCAAGAAAACCTACAGGTCAATACGACTATG
GAGATGATTCCAGTCAAGATACACAAAGCTACGAAACCATTGATGAAATG
GAATTGAACAGGTTGGGGATGGGTATCTACCCTGAGGAGTTTGTTGATGA
TGATGGGTACAGTGATGAAGGAAGTAGTGATTTGAGCCAACCTATGACCA
GCCAGCCTTCAAGCCAAATCAAAAAACACAGCCTGAAAATGGTGATTAAG
GCTCCACCTTCAGACCCGAATGGAAAACAAAGAAAACGCAAGAAGAAAAG
CAAGCAACAAACAAAAGAAAATGACGAGCCGCCAGCTAAACTAAATAAAA
AGGTGGAAAAGGAACTAAAGGAACCCTATTACTTTTCGGATGCTGCTACC
ACTTCCCTTTTGGAGGCATACAAAAACTGCACCCCATTGATGTCTTCTGG
AAAATACAGAAAAAAACAGATTTGGCAGAAGATTGCTCAAGACTTGAGGT
GCAAACTTGTTAACGCTGGTGCCACCGCCTTTCCATCAAGTGACCAGTGC
ATGCAGCGTCATCGAACCGTCATCAAAGCCTTCAAACAAACGAAGAACTT
GAATCGTGAAAGTGGTCAAGGCAGGGCTACTTGCAAATTCCAAGACGAAC
TCAACGACCTTGAAGGTCACAAACCTGACGTAGTACCAGATTACACCATG
GCCTCTACAGGTGAGGTTACACGTAGAAATTCAAACAAGGATGACCAAGA
GGTCCCATCTACATCAGCTAGCACTGCACAACAATCAACCCCACCACCAA
AAGTAAAGTCAAAGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAATG
GTAATTTTCATGGAAAGATATGAGGAGAGGAAGGCAAAGCGAGATGAGGC
ATTAATGAAGAGAAAAGAAACATTACATGCAGCAAGTATGGCAATGATGG
ATAAATTAATTGACAAGTTATAAATGAACTCAGGAAAGCCAAGAAAACCT
ACAGGTCAATACGACTATGGAGATGATTCCAGTCAAGATACACAAAGCTA
CGAAACCATTGATGAAATGGAATTGAACAGGTTGGGGATGGGTATCTACC
CTGAGGAGTTTGTTGATGATGATGGGTACAGTGATGAAGGAAGTAGTGAT
TTGAGCCAACCTATGACCAGCCAGCCTTCAAGCCAAATCAAAAAACACAG
CCTGAAAATGGTGATTAAGGCTCCACCTTCAGACCCGAATGGAAAACAAA
GAAAACGCAAGAAGAAAAGCAAGCAACAAACAAAAGAAAATGACGAGCCG
CCAGCTAAACTAAATAAAAAGGTGGAAAAGGAACTAAAGGAACCCTATTA
CTTTTCGGATGCTGCTACCACTTCCCTTTTGGAGGCATACAAAAACTGCA
CCCCATTGATGTCTTCTGGAAAATACAGAAAAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050240-exon-scaffold_168-1575043694:31700..32556 | TCONS_00050240-exon-scaffold_168-1575043694:31700..32556 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1575043694:30854..31463 | TCONS_00050240-exon-scaffold_168-1575043694:30854..31463 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1575043694:30562..30619 | TCONS_00050240-exon-scaffold_168-1575043694:30562..30619 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1510915933:31700..32556 | TCONS_00050240-exon-scaffold_168-1510915933:31700..32556 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1510915933:30854..31463 | TCONS_00050240-exon-scaffold_168-1510915933:30854..31463 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1510915933:30562..30619 | TCONS_00050240-exon-scaffold_168-1510915933:30562..30619 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1491911889:31700..32556 | TCONS_00050240-exon-scaffold_168-1491911889:31700..32556 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1491911889:30854..31463 | TCONS_00050240-exon-scaffold_168-1491911889:30854..31463 | Clytia hemisphaerica | exon |
| TCONS_00050240-exon-scaffold_168-1491911889:30562..30619 | TCONS_00050240-exon-scaffold_168-1491911889:30562..30619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:30562..32556 - |
Blast
The following BLAST results are available for this feature:
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