TCONS_00050283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050283
Unique NameTCONS_00050283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050283 ID=TCONS_00050283|Name=TCONS_00050283|organism=Clytia hemisphaerica|type=transcript|length=618bp
TCTCGTTTTTGGAAACATGTAAGCAATTTAATGTTTTTCCTGCTGGTCTA
AGATTGGAAATGAAACCATTCATTTCGTTTGCCTCGAGCGAAATTCTTGC
ATCATGGCAGGATACAATCAATTCTACTCAACGTCAGCTACTTGAAACAT
TGTTGTATGGTATCCACGACAAACTTATCTGTTTTGAAGTGGAGTTCTGG
ACAAATGTCGCAAAGTATGCAGAGGAGATTGAGAGCGAAACACTTGAGAA
TTGGTTCGTGGAGCTACTTTGTTTTTTGGAAAAGGAGGAGAGAAACATCT
TGAAGAGGAAACGCAAAAAACTTTGTAAGTTGATTTCACATCCAGTTGAG
AGAAAAATGGCCTTGGAAAGAATGGAGGAACACAAATCTTGCTTGTTGTT
TAAATCAGATCTTTTGGTATATTGCAAAAGTATTTatgaagactttgaaa
atttgcttaattTGGTTCTTATTGGGGGTAAATCTAAAGTAAAGANAGAA
CACAAATCTTGCTTGTTGTTTAAATCGGATCTTTTGGTATATTGCAAAAG
TATTTatgaagactttgaaaatttgcttaattTGGTTCTTATTGGGGGTA
AATCTAAAGTAAAGACGA
Run BLAST on NCBI

protein sequence of TCONS_00050283-protein

>TCONS_00050283-protein ID=TCONS_00050283-protein|Name=TCONS_00050283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
SFLETCKQFNVFPAGLRLEMKPFISFASSEILASWQDTINSTQRQLLETL
LYGIHDKLICFEVEFWTNVAKYAEEIESETLENWFVELLCFLEKEERNIL
KRKRKKLCKLISHPVERKMALERMEEHKSCLLFKSDLLVYCKSIYEDFEN
LLNLVLIGGKSKVKXEHKSCLLFKSDLLVYCKSIYEDFENLLNLVLIGGK
SKVKT
Run BLAST on NCBI

transcript from alignment at scaffold_168:59183..59800

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050283 ID=TCONS_00050283|Name=TCONS_00050283|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at scaffold_168:59183..59800 (Clytia hemisphaerica)
TCGTCTTTACTTTAGATTTACCCCCAATAAGAACCAaattaagcaaattt
tcaaagtcttcatAAATACTTTTGCAATATACCAAAAGATCCGATTTAAA
CAACAAGCAAGATTTGTGTTCTNTCTTTACTTTAGATTTACCCCCAATAA
GAACCAaattaagcaaattttcaaagtcttcatAAATACTTTTGCAATAT
ACCAAAAGATCTGATTTAAACAACAAGCAAGATTTGTGTTCCTCCATTCT
TTCCAAGGCCATTTTTCTCTCAACTGGATGTGAAATCAACTTACAAAGTT
TTTTGCGTTTCCTCTTCAAGATGTTTCTCTCCTCCTTTTCCAAAAAACAA
AGTAGCTCCACGAACCAATTCTCAAGTGTTTCGCTCTCAATCTCCTCTGC
ATACTTTGCGACATTTGTCCAGAACTCCACTTCAAAACAGATAAGTTTGT
CGTGGATACCATACAACAATGTTTCAAGTAGCTGACGTTGAGTAGAATTG
ATTGTATCCTGCCATGATGCAAGAATTTCGCTCGAGGCAAACGAAATGAA
TGGTTTCATTTCCAATCTTAGACCAGCAGGAAAAACATTAAATTGCTTAC
ATGTTTCCAAAAACGAGA

Coding sequence (CDS) from alignment at scaffold_168:59183..59800

>TCONS_00050283 ID=TCONS_00050283|Name=TCONS_00050283|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_168:59183..59800 (Clytia hemisphaerica)
CGTCTTTACTTTAGATTTACCCCCAATAAGAACCAaattaagcaaatttt
caaagtcttcatAAATACTTTTGCAATATACCAAAAGATCCGATTTAAAC
AACAAGCAAGATTTGTGTTCTNTCTTTACTTTAGATTTACCCCCAATAAG
AACCAaattaagcaaattttcaaagtcttcatAAATACTTTTGCAATATA
CCAAAAGATCTGATTTAAACAACAAGCAAGATTTGTGTTCCTCCATTCTT
TCCAAGGCCATTTTTCTCTCAACTGGATGTGAAATCAACTTACAAAGTTT
TTTGCGTTTCCTCTTCAAGATGTTTCTCTCCTCCTTTTCCAAAAAACAAA
GTAGCTCCACGAACCAATTCTCAAGTGTTTCGCTCTCAATCTCCTCTGCA
TACTTTGCGACATTTGTCCAGAACTCCACTTCAAAACAGATAAGTTTGTC
GTGGATACCATACAACAATGTTTCAAGTAGCTGACGTTGAGTAGAATTGA
TTGTATCCTGCCATGATGCAAGAATTTCGCTCGAGGCAAACGAAATGAAT
GGTTTCATTTCCAATCTTAGACCAGCAGGAAAAACATTAAATTGCTTACA
TGTTTCCAAAAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031840XLOC_031840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050283-proteinTCONS_00050283-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050283-exon-scaffold_168-1491911889:59183..59800TCONS_00050283-exon-scaffold_168-1491911889:59183..59800Clytia hemisphaericaexon
TCONS_00050283-exon-scaffold_168-1510915933:59183..59800TCONS_00050283-exon-scaffold_168-1510915933:59183..59800Clytia hemisphaericaexon
TCONS_00050283-exon-scaffold_168-1575043694:59183..59800TCONS_00050283-exon-scaffold_168-1575043694:59183..59800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:59183..59800 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30114	1.86093	0.785716	1.34523	1.63768	1.20168	0.334564	0	0	0	0.351528	0.0577701	0.346139	0.119823	0	0	0	0.0667432	0.0922094	0.289471	0	0	2.08861	1.17548	0.55879	0.166236	0	0.126937	0.673943	1.07901
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015849Amyloid_glyco_heparin-bd
Vocabulary: Molecular Function
TermDefinition
GO:0008201heparin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008201 heparin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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