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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050285 ID=TCONS_00050285|Name=TCONS_00050285|organism=Clytia hemisphaerica|type=transcript|length=3490bp CTCTTTAATCACCATAAAAATCTACGGTATAATTTATAAGGTttcctttt tgaagaaaaaaaaaaaaaataataataataataaaaatatatttacatcG TTTTCGTTTTTCCTTTATGTACTaataaaaaggggaaaaaatgtGTGTCA GAAGGGGAGCTACAGTGAAAGTGGGGGCGGTACGATGGCGTAAGGTGAAA ATAGGAATCACCTCGAAAGAGAGACTAAGGGTCAGTGTAGACCGAGACTA AAAAATCTTAAGGACGGACTTGAGTTGAGAGTAATAAGGACTAAAGTATA CTAAGAAAAAATTAAGGATAAATTAAAAATTCTATCTATATATCTGGTCC TAGTCTAGAGAGGGTCTTGGAGGCAGGAATCACCCGCCAGGGAATTGCGA AAATGAACTGGATGAACTAAATGGACTAAATCAGGGTGCCTCCGAGGAGG ATTCCCCGAAAAAATAAACAAAAATTCCAAGAGTTGAAAGTCCAAAATAT AAAGGAAATTATGGTTGGGTGTCAGATTGTATAAAGATGAGGAAAAAAAG GGAATTGCTTGCAAAATGGTTGAGGAGAATTGAATATAGATACACGTAGC CTAAGTTGTCAAACAGAAAGAAAACAGTAAAAAATTATATATATCTTGTA AGCATATTTTTCAGTTCTTGTCTGTTCTCAATGACAGACCAATTTTCAAG AATGTTTTTTATTCTACTTTCAGTTTCCAGGTCCAAGCTATCTTCGGTAA CCATGGTCAACTTGTGCTTCTTGGGGCTTAGCAGGAGGTCGATCACATTG ATACCCTCCGACTGACAGGTGTCTAATAAATCTTGTATCAACGAGTGTGA GCGGTTTGGTTGAGATAGAATGGAGAACAAGTAAGATGATGTCATTGGAT TCTTCATCAGTTGGTTTACAAGATTGATCTTACGTTGCTTCAGAACGTTT GTAACTGTAGTCAAGTTAAAGTACTTCAGAAGTTCATTGGTGCTGTGCTT TGAGAGTCCCATCAACGATTTGAGTGCAGAGCGAAGTTGGCGGTCAAGTA GTTGACTTTGCGTTACATTCAAGTTAGTGATTTCCAGACCGTACAGTACC TTAGGGATCACTATTGATTTGAAAAGTGTTACAATCGAGCTTGGATGTAG TTTCCGGATACCACAAGAGATGAGTGATGAACTGACTGCCCATAATTCAG AGACACGGTCTTCAAAATGTCTTAAGAGAGAAAGATGTTGAGATTTGATT GACCATTGAAATCCAAGGTGTTTCAGGTTGGTTTGAGGGTGGATGGTTTC ACCGTTTAGATTTAGGGTTGGATTAGGAAATGGGTGCTTTCCAGATatca aaaattgagttttttgtTTGTCTGTGTTAAATTTGATGCCTTTCTTCTGG CCATAGTTGAAACAGGTGTCTATCATAATTTGAAGTTGTTTGAGGGTCGG GCTGAGTAAAATGATATCGTCCGCAAACACTATTATTGAAGTGTTCAGAG ATTGTTCGAGTTGCGTCCCTACCTTGAGATTGTGGATGTTTTCAATAATC TCCTCGGTGTAGAGGTTATACAGGTATGGCGATAAGATTGACCCTTGTCT AACTCCTTGGGATAAACGAAACGTATCTGAGAAGTGATTTCTATATTTGA CATTTGCTTCTCCTTTCAGGTACAAGTCGATTAGAAAGCGGGTGACCTGT TTTGGTAAAGTGGTTTTATCAATAAGATGTTGAAATAGTGCCAGCCAATT ACAACAATCAAAAGCTTTTTCAGCGTTAAGACTGCACATATATACTGGAG TGTTCTCGTTGTTGTATTTGCAAATAGTTTCTCTCAGTAGTAATTCCGCG TGCGTGGTGGAGCCATCAGATGTGAAGCCGAATTGAGCATCTTGGTGATT TTTGAGATTCGGACATTTGAGCAGAATAAGTTTTTCAATGAGTTTAGTGA TGATAGGGATGAGGCTGATGCCTCTGTAATTGTTCGGGTCGCTAAGGGGT TTACGATATGACTTGATCACTGGGACGATGTGAGATGTGGCAAGTAATGT TGGAGTTACGTCAGACTTTATAATATCGTTGATCAGCTGGGTAATGAAGG ATAGAAAAGGTTCATCTACAGCGTGAAGGTAATGGTCAGCTTTGATTGAG TATGGGtctgttgttttatttttatttagttcTTTTATGGCAGACTGAAC CTCCGTATTAATCACGTGGAAATCATCagatgggtcatttatcaaatcTT CGAGGATATGTTGGAGTTGAGTGTTGGATTCATTGTTGTCAATCTGGTGA ATTCTTGGCGTGTTTAAGAGTTTGTCGAAGTGGTTTTTGAATTCTTGATT TATATCTTGTGTTGATGTTTTGCCATTGATCGTATATAGCTTTTGTGATT GTCCCTTTGCTAGACGTATGTTTTTCCAATAGGATTTTGGGTTTGAATGT TTAATTTTATCCAGTTTCACATAGTGTTCTGCGGTTGCTTGATTTTTGCA GGTTTTAATTAGGATACGAAAGTCTCTACGGGCTAATTTGTAACGGTTGA ATTCTGTATTTTTTGTATCTTTGGTAAAACCTTTTTCTTTCCATGCGTTG AACATTGTTTGCagagtttttttcttcttggaaAGTTCATTGTTCCACCA AGGTTTTGGGTTTATTTTATGGAAAGAATTGTCCTTACGTAGTTCAGAGG CAGTTCTTATTCCACTCTCTTTAAGTGTTTgatgaagaaataaaatatca ttttcaatgtTTACACCTTGGTTCTTGTACTCTGAAATAGCATCATTTAC TGTCTTTTGGTATTTTTCAGTAAAGATTTTATTTGTCCACAAGTAAGTAG GGACAAAGTCGTTATCGTCAGTGTGTTCAGCATCAGGGAGGTCAGCAATT GAAGAGTACATTTTTAATGTTGTCGTCACTGGTAAATGGTCACCTGTGTT AAGATGATGAGGGTCTAGAACTTTGGTATCCGAGACAGCTTGTGTGAGAT TGGGTGAAATACATATGTGATCAATATAAGATTTATTGTCAAGAGTTAGG TGACTGTATGTGTACAAAGGGCCTGTGCCATGGGTGATGTCGGTAGGGGT CAGGGCCTGGCGGTCGAGGAAGTTGTCCAGACTGTCACTGAGAACGTTTG GGCGACTGAGTCTGTTTGATTCGAAGGTTTGTGGGCAACTTTGAAAGTCC CCAAAGATAACAATGTCCGAGATGTCTTCAAAGTGAGATATTACTCCAGA TAGAGCTGAGAGTTGTGCATTATAGGTTTCTTTGAGGTTAGGGCTTTGGT TAACTGACTGGAGGTAGACACCGATTAATAGTAAGGAAGTGTTTTGCGAT GTATTGATTCTGATTACTGTTGCATAGTCTTCATCAAGGATGTGTTCCGG TTTGTTATTGATTTGGTTTTTATTGATAAGCATGGCTGTACCTCCGTAGG GGCGACCAGAGGAGCCTCTCTTTGCTGGTACGAAGAAGAC Run BLAST on NCBI protein sequence of TCONS_00050285-protein >TCONS_00050285-protein ID=TCONS_00050285-protein|Name=TCONS_00050285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=951bp
VFFVPAKRGSSGRPYGGTAMLINKNQINNKPEHILDEDYATVIRINTSQN TSLLLIGVYLQSVNQSPNLKETYNAQLSALSGVISHFEDISDIVIFGDFQ SCPQTFESNRLSRPNVLSDSLDNFLDRQALTPTDITHGTGPLYTYSHLTL DNKSYIDHICISPNLTQAVSDTKVLDPHHLNTGDHLPVTTTLKMYSSIAD LPDAEHTDDNDFVPTYLWTNKIFTEKYQKTVNDAISEYKNQGVNIENDIL FLHQTLKESGIRTASELRKDNSFHKINPKPWWNNELSKKKKTLQTMFNAW KEKGFTKDTKNTEFNRYKLARRDFRILIKTCKNQATAEHYVKLDKIKHSN PKSYWKNIRLAKGQSQKLYTINGKTSTQDINQEFKNHFDKLLNTPRIHQI DNNESNTQLQHILEDLINDPSDDFHVINTEVQSAIKELNKNKTTDPYSIK ADHYLHAVDEPFLSFITQLINDIIKSDVTPTLLATSHIVPVIKSYRKPLS DPNNYRGISLIPIITKLIEKLILLKCPNLKNHQDAQFGFTSDGSTTHAEL LLRETICKYNNENTPVYMCSLNAEKAFDCCNWLALFQHLIDKTTLPKQVT RFLIDLYLKGEANVKYRNHFSDTFRLSQGVRQGSILSPYLYNLYTEEIIE NIHNLKVGTQLEQSLNTSIIVFADDIILLSPTLKQLQIMIDTCFNYGQKK GIKFNTDKQKTQFLISGKHPFPNPTLNLNGETIHPQTNLKHLGFQWSIKS QHLSLLRHFEDRVSELWAVSSSLISCGIRKLHPSSIVTLFKSIVIPKVLY GLEITNLNVTQSQLLDRQLRSALKSLMGLSKHSTNELLKYFNLTTVTNVL KQRKINLVNQLMKNPMTSSYLFSILSQPNRSHSLIQDLLDTCQSEGINVI DLLLSPKKHKLTMVTEDSLDLETESRIKNILENWSVIENRQELKNMLTRY I Run BLAST on NCBI transcript from alignment at scaffold_168:61616..65105 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050285 ID=TCONS_00050285|Name=TCONS_00050285|organism=Clytia hemisphaerica|type=transcript|length=3490bp|location=Sequence derived from alignment at scaffold_168:61616..65105 (Clytia hemisphaerica) GTCTTCTTCGTACCAGCAAAGAGAGGCTCCTCTGGTCGCCCCTACGGAGG
TACAGCCATGCTTATCAATAAAAACCAAATCAATAACAAACCGGAACACA
TCCTTGATGAAGACTATGCAACAGTAATCAGAATCAATACATCGCAAAAC
ACTTCCTTACTATTAATCGGTGTCTACCTCCAGTCAGTTAACCAAAGCCC
TAACCTCAAAGAAACCTATAATGCACAACTCTCAGCTCTATCTGGAGTAA
TATCTCACTTTGAAGACATCTCGGACATTGTTATCTTTGGGGACTTTCAA
AGTTGCCCACAAACCTTCGAATCAAACAGACTCAGTCGCCCAAACGTTCT
CAGTGACAGTCTGGACAACTTCCTCGACCGCCAGGCCCTGACCCCTACCG
ACATCACCCATGGCACAGGCCCTTTGTACACATACAGTCACCTAACTCTT
GACAATAAATCTTATATTGATCACATATGTATTTCACCCAATCTCACACA
AGCTGTCTCGGATACCAAAGTTCTAGACCCTCATCATCTTAACACAGGTG
ACCATTTACCAGTGACGACAACATTAAAAATGTACTCTTCAATTGCTGAC
CTCCCTGATGCTGAACACACTGACGATAACGACTTTGTCCCTACTTACTT
GTGGACAAATAAAATCTTTACTGAAAAATACCAAAAGACAGTAAATGATG
CTATTTCAGAGTACAAGAACCAAGGTGTAAacattgaaaatgatatttta
tttcttcatcAAACACTTAAAGAGAGTGGAATAAGAACTGCCTCTGAACT
ACGTAAGGACAATTCTTTCCATAAAATAAACCCAAAACCTTGGTGGAACA
ATGAACTttccaagaagaaaaaaactctGCAAACAATGTTCAACGCATGG
AAAGAAAAAGGTTTTACCAAAGATACAAAAAATACAGAATTCAACCGTTA
CAAATTAGCCCGTAGAGACTTTCGTATCCTAATTAAAACCTGCAAAAATC
AAGCAACCGCAGAACACTATGTGAAACTGGATAAAATTAAACATTCAAAC
CCAAAATCCTATTGGAAAAACATACGTCTAGCAAAGGGACAATCACAAAA
GCTATATACGATCAATGGCAAAACATCAACACAAGATATAAATCAAGAAT
TCAAAAACCACTTCGACAAACTCTTAAACACGCCAAGAATTCACCAGATT
GACAACAATGAATCCAACACTCAACTCCAACATATCCTCGAAgatttgat
aaatgacccatctGATGATTTCCACGTGATTAATACGGAGGTTCAGTCTG
CCATAAAAgaactaaataaaaataaaacaacagaCCCATACTCAATCAAA
GCTGACCATTACCTTCACGCTGTAGATGAACCTTTTCTATCCTTCATTAC
CCAGCTGATCAACGATATTATAAAGTCTGACGTAACTCCAACATTACTTG
CCACATCTCACATCGTCCCAGTGATCAAGTCATATCGTAAACCCCTTAGC
GACCCGAACAATTACAGAGGCATCAGCCTCATCCCTATCATCACTAAACT
CATTGAAAAACTTATTCTGCTCAAATGTCCGAATCTCAAAAATCACCAAG
ATGCTCAATTCGGCTTCACATCTGATGGCTCCACCACGCACGCGGAATTA
CTACTGAGAGAAACTATTTGCAAATACAACAACGAGAACACTCCAGTATA
TATGTGCAGTCTTAACGCTGAAAAAGCTTTTGATTGTTGTAATTGGCTGG
CACTATTTCAACATCTTATTGATAAAACCACTTTACCAAAACAGGTCACC
CGCTTTCTAATCGACTTGTACCTGAAAGGAGAAGCAAATGTCAAATATAG
AAATCACTTCTCAGATACGTTTCGTTTATCCCAAGGAGTTAGACAAGGGT
CAATCTTATCGCCATACCTGTATAACCTCTACACCGAGGAGATTATTGAA
AACATCCACAATCTCAAGGTAGGGACGCAACTCGAACAATCTCTGAACAC
TTCAATAATAGTGTTTGCGGACGATATCATTTTACTCAGCCCGACCCTCA
AACAACTTCAAATTATGATAGACACCTGTTTCAACTATGGCCAGAAGAAA
GGCATCAAATTTAACACAGACAAacaaaaaactcaatttttgatATCTGG
AAAGCACCCATTTCCTAATCCAACCCTAAATCTAAACGGTGAAACCATCC
ACCCTCAAACCAACCTGAAACACCTTGGATTTCAATGGTCAATCAAATCT
CAACATCTTTCTCTCTTAAGACATTTTGAAGACCGTGTCTCTGAATTATG
GGCAGTCAGTTCATCACTCATCTCTTGTGGTATCCGGAAACTACATCCAA
GCTCGATTGTAACACTTTTCAAATCAATAGTGATCCCTAAGGTACTGTAC
GGTCTGGAAATCACTAACTTGAATGTAACGCAAAGTCAACTACTTGACCG
CCAACTTCGCTCTGCACTCAAATCGTTGATGGGACTCTCAAAGCACAGCA
CCAATGAACTTCTGAAGTACTTTAACTTGACTACAGTTACAAACGTTCTG
AAGCAACGTAAGATCAATCTTGTAAACCAACTGATGAAGAATCCAATGAC
ATCATCTTACTTGTTCTCCATTCTATCTCAACCAAACCGCTCACACTCGT
TGATACAAGATTTATTAGACACCTGTCAGTCGGAGGGTATCAATGTGATC
GACCTCCTGCTAAGCCCCAAGAAGCACAAGTTGACCATGGTTACCGAAGA
TAGCTTGGACCTGGAAACTGAAAGTAGAATAAAAAACATTCTTGAAAATT
GGTCTGTCATTGAGAACAGACAAGAACTGAAAAATATGCTTACAAGATAT
ATATAATTTTTTACTGTTTTCTTTCTGTTTGACAACTTAGGCTACGTGTA
TCTATATTCAATTCTCCTCAACCATTTTGCAAGCAATTCCCTTTTTTTCC
TCATCTTTATACAATCTGACACCCAACCATAATTTCCTTTATATTTTGGA
CTTTCAACTCTTGGAATTTTTGTTTATTTTTTCGGGGAATCCTCCTCGGA
GGCACCCTGATTTAGTCCATTTAGTTCATCCAGTTCATTTTCGCAATTCC
CTGGCGGGTGATTCCTGCCTCCAAGACCCTCTCTAGACTAGGACCAGATA
TATAGATAGAATTTTTAATTTATCCTTAATTTTTTCTTAGTATACTTTAG
TCCTTATTACTCTCAACTCAAGTCCGTCCTTAAGATTTTTTAGTCTCGGT
CTACACTGACCCTTAGTCTCTCTTTCGAGGTGATTCCTATTTTCACCTTA
CGCCATCGTACCGCCCCCACTTTCACTGTAGCTCCCCTTCTGACACacat
tttttcccctttttattAGTACATAAAGGAAAAACGAAAACgatgtaaat
atatttttattattattattattttttttttttttcttcaaaaaggaaAC
CTTATAAATTATACCGTAGATTTTTATGGTGATTAAAGAG Coding sequence (CDS) from alignment at scaffold_168:61616..65105 >TCONS_00050285 ID=TCONS_00050285|Name=TCONS_00050285|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_168:61616..65105 (Clytia hemisphaerica) GTCTTCTTCGTACCAGCAAAGAGAGGCTCCTCTGGTCGCCCCTACGGAGG TACAGCCATGCTTATCAATAAAAACCAAATCAATAACAAACCGGAACACA TCCTTGATGAAGACTATGCAACAGTAATCAGAATCAATACATCGCAAAAC ACTTCCTTACTATTAATCGGTGTCTACCTCCAGTCAGTTAACCAAAGCCC TAACCTCAAAGAAACCTATAATGCACAACTCTCAGCTCTATCTGGAGTAA TATCTCACTTTGAAGACATCTCGGACATTGTTATCTTTGGGGACTTTCAA AGTTGCCCACAAACCTTCGAATCAAACAGACTCAGTCGCCCAAACGTTCT CAGTGACAGTCTGGACAACTTCCTCGACCGCCAGGCCCTGACCCCTACCG ACATCACCCATGGCACAGGCCCTTTGTACACATACAGTCACCTAACTCTT GACAATAAATCTTATATTGATCACATATGTATTTCACCCAATCTCACACA AGCTGTCTCGGATACCAAAGTTCTAGACCCTCATCATCTTAACACAGGTG ACCATTTACCAGTGACGACAACATTAAAAATGTACTCTTCAATTGCTGAC CTCCCTGATGCTGAACACACTGACGATAACGACTTTGTCCCTACTTACTT GTGGACAAATAAAATCTTTACTGAAAAATACCAAAAGACAGTAAATGATG CTATTTCAGAGTACAAGAACCAAGGTGTAAacattgaaaatgatatttta tttcttcatcAAACACTTAAAGAGAGTGGAATAAGAACTGCCTCTGAACT ACGTAAGGACAATTCTTTCCATAAAATAAACCCAAAACCTTGGTGGAACA ATGAACTttccaagaagaaaaaaactctGCAAACAATGTTCAACGCATGG AAAGAAAAAGGTTTTACCAAAGATACAAAAAATACAGAATTCAACCGTTA CAAATTAGCCCGTAGAGACTTTCGTATCCTAATTAAAACCTGCAAAAATC AAGCAACCGCAGAACACTATGTGAAACTGGATAAAATTAAACATTCAAAC CCAAAATCCTATTGGAAAAACATACGTCTAGCAAAGGGACAATCACAAAA GCTATATACGATCAATGGCAAAACATCAACACAAGATATAAATCAAGAAT TCAAAAACCACTTCGACAAACTCTTAAACACGCCAAGAATTCACCAGATT GACAACAATGAATCCAACACTCAACTCCAACATATCCTCGAAgatttgat aaatgacccatctGATGATTTCCACGTGATTAATACGGAGGTTCAGTCTG CCATAAAAgaactaaataaaaataaaacaacagaCCCATACTCAATCAAA GCTGACCATTACCTTCACGCTGTAGATGAACCTTTTCTATCCTTCATTAC CCAGCTGATCAACGATATTATAAAGTCTGACGTAACTCCAACATTACTTG CCACATCTCACATCGTCCCAGTGATCAAGTCATATCGTAAACCCCTTAGC GACCCGAACAATTACAGAGGCATCAGCCTCATCCCTATCATCACTAAACT CATTGAAAAACTTATTCTGCTCAAATGTCCGAATCTCAAAAATCACCAAG ATGCTCAATTCGGCTTCACATCTGATGGCTCCACCACGCACGCGGAATTA CTACTGAGAGAAACTATTTGCAAATACAACAACGAGAACACTCCAGTATA TATGTGCAGTCTTAACGCTGAAAAAGCTTTTGATTGTTGTAATTGGCTGG CACTATTTCAACATCTTATTGATAAAACCACTTTACCAAAACAGGTCACC CGCTTTCTAATCGACTTGTACCTGAAAGGAGAAGCAAATGTCAAATATAG AAATCACTTCTCAGATACGTTTCGTTTATCCCAAGGAGTTAGACAAGGGT CAATCTTATCGCCATACCTGTATAACCTCTACACCGAGGAGATTATTGAA AACATCCACAATCTCAAGGTAGGGACGCAACTCGAACAATCTCTGAACAC TTCAATAATAGTGTTTGCGGACGATATCATTTTACTCAGCCCGACCCTCA AACAACTTCAAATTATGATAGACACCTGTTTCAACTATGGCCAGAAGAAA GGCATCAAATTTAACACAGACAAacaaaaaactcaatttttgatATCTGG AAAGCACCCATTTCCTAATCCAACCCTAAATCTAAACGGTGAAACCATCC ACCCTCAAACCAACCTGAAACACCTTGGATTTCAATGGTCAATCAAATCT CAACATCTTTCTCTCTTAAGACATTTTGAAGACCGTGTCTCTGAATTATG GGCAGTCAGTTCATCACTCATCTCTTGTGGTATCCGGAAACTACATCCAA GCTCGATTGTAACACTTTTCAAATCAATAGTGATCCCTAAGGTACTGTAC GGTCTGGAAATCACTAACTTGAATGTAACGCAAAGTCAACTACTTGACCG CCAACTTCGCTCTGCACTCAAATCGTTGATGGGACTCTCAAAGCACAGCA CCAATGAACTTCTGAAGTACTTTAACTTGACTACAGTTACAAACGTTCTG AAGCAACGTAAGATCAATCTTGTAAACCAACTGATGAAGAATCCAATGAC ATCATCTTACTTGTTCTCCATTCTATCTCAACCAAACCGCTCACACTCGT TGATACAAGATTTATTAGACACCTGTCAGTCGGAGGGTATCAATGTGATC GACCTCCTGCTAAGCCCCAAGAAGCACAAGTTGACCATGGTTACCGAAGA TAGCTTGGACCTGGAAACTGAAAGTAGAATAAAAAACATTCTTGAAAATT GGTCTGTCATTGAGAACAGACAAGAACTGAAAAATATGCTTACAAGATAT ATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050285-exon-scaffold_168-1491911889:61616..65105 | TCONS_00050285-exon-scaffold_168-1491911889:61616..65105 | Clytia hemisphaerica | exon |
TCONS_00050285-exon-scaffold_168-1510915933:61616..65105 | TCONS_00050285-exon-scaffold_168-1510915933:61616..65105 | Clytia hemisphaerica | exon |
TCONS_00050285-exon-scaffold_168-1575043694:61616..65105 | TCONS_00050285-exon-scaffold_168-1575043694:61616..65105 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_168 | supercontig | scaffold_168:61616..65105 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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