TCONS_00050207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050207
Unique NameTCONS_00050207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050207 ID=TCONS_00050207|Name=TCONS_00050207|organism=Clytia hemisphaerica|type=transcript|length=127bp
TGTAGATCCAAGAAACAGCTTGGTTCAAGATGAGCATCGAAAGAAGATAT
TGAAAGATAATCTCACTCACAGCatcaaaaaaCTCCAAAAGACTCACGTG
AATAAATCAACATCTGTCATTGAGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_168:65762..66073+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050207 ID=TCONS_00050207|Name=TCONS_00050207|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_168:65762..66073+ (Clytia hemisphaerica)
TGTAGATCCAAGAAACAGCTTGGTTCAAGATGAGCATCGAAAGAAGATAT
TGAAAGATAATCTCACTCACAGCatcaaaaaagtattttaaattTCGTTC
CTCTTTTGATATgtacaaatttaatttcttgGCTTCTCATGCTGAAGCGA
AATTTTGGTTGAAAAGTCTAGTTGTTTTTTGGTAGTGacccagaaaaaat
taaaacccaTTGTGCAGTTTTTACTAAATCTTCAGAGCCATAATTAAAAA
GAATTTGTGTTTTTCAGCTCCAAAAGACTCACGTGAATAAATCAACATCT
GTCATTGAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031811XLOC_031811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050207-exon-scaffold_168-1491911889:65762..65843TCONS_00050207-exon-scaffold_168-1491911889:65762..65843Clytia hemisphaericaexon
TCONS_00050207-exon-scaffold_168-1510915933:65762..65843TCONS_00050207-exon-scaffold_168-1510915933:65762..65843Clytia hemisphaericaexon
TCONS_00050207-exon-scaffold_168-1575043694:65762..65843TCONS_00050207-exon-scaffold_168-1575043694:65762..65843Clytia hemisphaericaexon
TCONS_00050207-exon-scaffold_168-1491911889:66029..66073TCONS_00050207-exon-scaffold_168-1491911889:66029..66073Clytia hemisphaericaexon
TCONS_00050207-exon-scaffold_168-1510915933:66029..66073TCONS_00050207-exon-scaffold_168-1510915933:66029..66073Clytia hemisphaericaexon
TCONS_00050207-exon-scaffold_168-1575043694:66029..66073TCONS_00050207-exon-scaffold_168-1575043694:66029..66073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:65762..66073 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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