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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050212 ID=TCONS_00050212|Name=TCONS_00050212|organism=Clytia hemisphaerica|type=transcript|length=1235bp
AGAAGGCTTATTGTACCACGACCGAAAAGCCCATCTTGAAGAGAAAGGAA
TCACTGTTATCACTGGCAAGTCTGCAATCGAAAGTTTGAAGATGCCATGG
ATAAGACAGCACTTCAAAGCGATCTTCTTCGACGAATGGAATGAAGATGT
TCAACAAAAAATTGACGTTAAATGGTTGGATGATCTTCCCGTGTGTTGGA
TCGCACCTAACTCGGCTTACCGTGCGAAATCAAAAGAATTGAGTttgctt
aaaattcatttcaaggGTTTTGAAATCATTCACTTAACTTGCAATCTGAG
AAATACAAAAGAGATTGTGAAGAAAACGAAAAGTATAGCTGAAACACAAC
TCTACGAATATGCACATGGTGTTTCAGAAACTCCCGTGAATTTCCTTATT
GGAAGTCCAGCCGTGCATGTATCCTCTTTCGGCGAAGCCATATTTGAAGA
GCGCTTACTGCCAAAACCAAAGGAAGGATTTCTTCTTGTTTCAGACAGTG
TTAATTTCCCTGTTCCACCAAACGAACAAGTTAAATTCTTCCATTCCTCA
AGAAACGATTTCAACAATGATGAAAACCCATGCGACTTCCTACGTCAAGG
AAATGTTCTAGTTGTCTCTCGAAATTACGTATCGGGCTTCGAATCGCCGG
TTGTGGTTTACGAAAACGCTGAAATGTTGGAGGAAGATCTGGAGCACCAC
GAATGTAACATTTCAATGCGATGCACCACAAAACTTTACGTTGTTGGACA
AAATTCTGATTTAAATGGAACCACACCCTATGTTGAGATTGTTAGCCTGC
TCCAATCATATCTTGAAGATAGCCAACTTCTTAGTCGATTCAAGATTTGT
GCAAGTAATTACTTTTTAGACCATGTCAAACATTTTGAACGACGTGACAT
TTTCACGCATATTTTGCCGGTCCTTAAAGAAACAGTTGCAAATCTTTCAG
ACGTCGGTGACCAGCAGAATTTCTCAGCAGAACCTATCGTAAACGTATTA
AGTCCATTTTTAAGCGTCGTAAGTTCATTGCTCATGACAGAACGATTATC
AAACGAGCATATACGAGACCTTTTGAGAATGGATTGGTTCATTCAGAGAA
CCATCGAATTAGACCTCCATCACTGCACCACCGTTCAGCAATTCCAAGAC
ACTTTTGAACGTACTTTAAAGTTTCAATCGTTGCTCAGGACCTTTGACGA
ATGTGCCTTTGGAAAGCTGAATAGATACACTCTGC Run BLAST on NCBI protein sequence of TCONS_00050212-protein >TCONS_00050212-protein ID=TCONS_00050212-protein|Name=TCONS_00050212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
EGLLYHDRKAHLEEKGITVITGKSAIESLKMPWIRQHFKAIFFDEWNEDV
QQKIDVKWLDDLPVCWIAPNSAYRAKSKELSLLKIHFKGFEIIHLTCNLR
NTKEIVKKTKSIAETQLYEYAHGVSETPVNFLIGSPAVHVSSFGEAIFEE
RLLPKPKEGFLLVSDSVNFPVPPNEQVKFFHSSRNDFNNDENPCDFLRQG
NVLVVSRNYVSGFESPVVVYENAEMLEEDLEHHECNISMRCTTKLYVVGQ
NSDLNGTTPYVEIVSLLQSYLEDSQLLSRFKICASNYFLDHVKHFERRDI
FTHILPVLKETVANLSDVGDQQNFSAEPIVNVLSPFLSVVSSLLMTERLS
NEHIRDLLRMDWFIQRTIELDLHHCTTVQQFQDTFERTLKFQSLLRTFDE
CAFGKLNRYTL Run BLAST on NCBI transcript from alignment at scaffold_168:85487..87469+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050212 ID=TCONS_00050212|Name=TCONS_00050212|organism=Clytia hemisphaerica|type=transcript|length=1983bp|location=Sequence derived from alignment at scaffold_168:85487..87469+ (Clytia hemisphaerica)
AGAAGGCTTATTGTACCACGACCGAAAAGCCCATCTTGAAGAGAAAGGAA
TCACTGTTATCACTGGCAAGTCTGCAATCGTAAGTCAATCATTTGTATTT
TGTCGACCTgtgcattttcatttttgatggtTGTGTCCAAAATTACGTGA
ATTTTTACTATATCCTTTTTTGATTGTCAAGACTTAAAATTTGGCATATA
GCTTTTTAAAATTGGTACAGTGGTTTTCTTGTGCGCTATTCTATTCGGAA
AACcacattttcacatttttaatgGCTTTTACGACACAATGATCTCAGCt
gatttttatcaattatcCTAACAAAAGTTATGgcgaaaaataggaaaata
gtAATTCTGAgcgatttttcaaaaagtttttagtaaaaaataaattttta
aaaaataatttaatttgatACCCCATTTTTGGCATGTTTTGGGCTTTTTC
AAAAGCAAATTTTTGGCTTCAAAAGTTCATGACTTGAGAACCACTgagca
aaattcaaaaagtttacaattataaaagaattcattaaaatgacaatatt
tgccgtttttgctgatttagaaaataataatattgtatGTATGcaaagtt
aattttttgtcaagtAAATAGCAAAATAATTCCACAGGTCTTATCTATTA
CCCATCTTTAGAATTTTTAGTTCTATTCCAGGGCCCaagatggggggggg
ggcacctaCAATTTTGGGGGGCCATATTCTGTAACTAGTGAAAGGAAACA
ACCAGAACTGCGACAAAAGACATGCCAAAAAGAATATTCTAAAATTATGC
TGAGAACTTACCTTGTTTCTTTTGCAGGAAAGTTTGAAGATGCCATGGAT
AAGACAGCACTTCAAAGCGATCTTCTTCGACGAATGGAATGAAGATGTTC
AACAAAAAATTGACGTTAAATGGTTGGATGATCTTCCCGTGTGTTGGATC
GCACCTAACTCGGCTTACCGTGCGAAATCAAAAGAATTGAGTttgcttaa
aattcatttcaaggGTTTTGAAATCATTCACTTAACTTGCAATCTGAGAA
ATACAAAAGAGATTGTGAAGAAAACGAAAAGTATAGCTGAAACACAACTC
TACGAATATGCACATGGTGTTTCAGAAACTCCCGTGAATTTCCTTATTGG
AAGTCCAGCCGTGCATGTATCCTCTTTCGGCGAAGCCATATTTGAAGAGC
GCTTACTGCCAAAACCAAAGGAAGGATTTCTTCTTGTTTCAGACAGTGTT
AATTTCCCTGTTCCACCAAACGAACAAGTTAAATTCTTCCATTCCTCAAG
AAACGATTTCAACAATGATGAAAACCCATGCGACTTCCTACGTCAAGGAA
ATGTTCTAGTTGTCTCTCGAAATTACGTATCGGGCTTCGAATCGCCGGTT
GTGGTTTACGAAAACGCTGAAATGTTGGAGGAAGATCTGGAGCACCACGA
ATGTAACATTTCAATGCGATGCACCACAAAACTTTACGTTGTTGGACAAA
ATTCTGATTTAAATGGAACCACACCCTATGTTGAGATTGTTAGCCTGCTC
CAATCATATCTTGAAGATAGCCAACTTCTTAGTCGATTCAAGATTTGTGC
AAGTAATTACTTTTTAGACCATGTCAAACATTTTGAACGACGTGACATTT
TCACGCATATTTTGCCGGTCCTTAAAGAAACAGTTGCAAATCTTTCAGAC
GTCGGTGACCAGCAGAATTTCTCAGCAGAACCTATCGTAAACGTATTAAG
TCCATTTTTAAGCGTCGTAAGTTCATTGCTCATGACAGAACGATTATCAA
ACGAGCATATACGAGACCTTTTGAGAATGGATTGGTTCATTCAGAGAACC
ATCGAATTAGACCTCCATCACTGCACCACCGTTCAGCAATTCCAAGACAC
TTTTGAACGTACTTTAAAGTTTCAATCGTTGCTCAGGACCTTTGACGAAT
GTGCCTTTGGAAAGCTGAATAGATACACTCTGC Coding sequence (CDS) from alignment at scaffold_168:85487..87469+ >TCONS_00050212 ID=TCONS_00050212|Name=TCONS_00050212|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_168:85487..87469+ (Clytia hemisphaerica)
GAAGGCTTATTGTACCACGACCGAAAAGCCCATCTTGAAGAGAAAGGAAT
CACTGTTATCACTGGCAAGTCTGCAATCGAAAGTTTGAAGATGCCATGGA
TAAGACAGCACTTCAAAGCGATCTTCTTCGACGAATGGAATGAAGATGTT
CAACAAAAAATTGACGTTAAATGGTTGGATGATCTTCCCGTGTGTTGGAT
CGCACCTAACTCGGCTTACCGTGCGAAATCAAAAGAATTGAGTttgctta
aaattcatttcaaggGTTTTGAAATCATTCACTTAACTTGCAATCTGAGA
AATACAAAAGAGATTGTGAAGAAAACGAAAAGTATAGCTGAAACACAACT
CTACGAATATGCACATGGTGTTTCAGAAACTCCCGTGAATTTCCTTATTG
GAAGTCCAGCCGTGCATGTATCCTCTTTCGGCGAAGCCATATTTGAAGAG
CGCTTACTGCCAAAACCAAAGGAAGGATTTCTTCTTGTTTCAGACAGTGT
TAATTTCCCTGTTCCACCAAACGAACAAGTTAAATTCTTCCATTCCTCAA
GAAACGATTTCAACAATGATGAAAACCCATGCGACTTCCTACGTCAAGGA
AATGTTCTAGTTGTCTCTCGAAATTACGTATCGGGCTTCGAATCGCCGGT
TGTGGTTTACGAAAACGCTGAAATGTTGGAGGAAGATCTGGAGCACCACG
AATGTAACATTTCAATGCGATGCACCACAAAACTTTACGTTGTTGGACAA
AATTCTGATTTAAATGGAACCACACCCTATGTTGAGATTGTTAGCCTGCT
CCAATCATATCTTGAAGATAGCCAACTTCTTAGTCGATTCAAGATTTGTG
CAAGTAATTACTTTTTAGACCATGTCAAACATTTTGAACGACGTGACATT
TTCACGCATATTTTGCCGGTCCTTAAAGAAACAGTTGCAAATCTTTCAGA
CGTCGGTGACCAGCAGAATTTCTCAGCAGAACCTATCGTAAACGTATTAA
GTCCATTTTTAAGCGTCGTAAGTTCATTGCTCATGACAGAACGATTATCA
AACGAGCATATACGAGACCTTTTGAGAATGGATTGGTTCATTCAGAGAAC
CATCGAATTAGACCTCCATCACTGCACCACCGTTCAGCAATTCCAAGACA
CTTTTGAACGTACTTTAAAGTTTCAATCGTTGCTCAGGACCTTTGACGAA
TGTGCCTTTGGAAAGCTGAATAGATACACTCTGGAAGGCTTATTGTACCA
CGACCGAAAAGCCCATCTTGAAGAGAAAGGAATCACTGTTATCACTGGCA
AGTCTGCAATCGAAAGTTTGAAGATGCCATGGATAAGACAGCACTTCAAA
GCGATCTTCTTCGACGAATGGAATGAAGATGTTCAACAAAAAATTGACGT
TAAATGGTTGGATGATCTTCCCGTGTGTTGGATCGCACCTAACTCGGCTT
ACCGTGCGAAATCAAAAGAATTGAGTttgcttaaaattcatttcaaggGT
TTTGAAATCATTCACTTAACTTGCAATCTGAGAAATACAAAAGAGATTGT
GAAGAAAACGAAAAGTATAGCTGAAACACAACTCTACGAATATGCACATG
GTGTTTCAGAAACTCCCGTGAATTTCCTTATTGGAAGTCCAGCCGTGCAT
GTATCCTCTTTCGGCGAAGCCATATTTGAAGAGCGCTTACTGCCAAAACC
AAAGGAAGGATTTCTTCTTGTTTCAGACAGTGTTAATTTCCCTGTTCCAC
CAAACGAACAAGTTAAATTCTTCCATTCCTCAAGAAACGATTTCAACAAT
GATGAAAACCCATGCGACTTCCTACGTCAAGGAAATGTTCTAGTTGTCTC
TCGAAATTACGTATCGGGCTTCGAATCGCCGGTTGTGGTTTACGAAAACG
CTGAAATGTTGGAGGAAGATCTGGAGCACCACGAATGTAACATTTCAATG
CGATGCACCACAAAACTTTACGTTGTTGGACAAAATTCTGATTTAAATGG
AACCACACCCTATGTTGAGATTGTTAGCCTGCTCCAATCATATCTTGAAG
ATAGCCAACTTCTTAGTCGATTCAAGATTTGTGCAAGTAATTACTTTTTA
GACCATGTCAAACATTTTGAACGACGTGACATTTTCACGCATATTTTGCC
GGTCCTTAAAGAAACAGTTGCAAATCTTTCAGACGTCGGTGACCAGCAGA
ATTTCTCAGCAGAACCTATCGTAAACGTATTAAGTCCATTTTTAAGCGTC
GTAAGTTCATTGCTCATGACAGAACGATTATCAAACGAGCATATACGAGA
CCTTTTGAGAATGGATTGGTTCATTCAGAGAACCATCGAATTAGACCTCC
ATCACTGCACCACCGTTCAGCAATTCCAAGACACTTTTGAACGTACTTTA
AAGTTTCAATCGTTGCTCAGGACCTTTGACGAATGTGCCTTTGGAAAGCT
GAATAGATACACTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050212-exon-scaffold_168-1491911889:85487..85565 | TCONS_00050212-exon-scaffold_168-1491911889:85487..85565 | Clytia hemisphaerica | exon |
| TCONS_00050212-exon-scaffold_168-1510915933:85487..85565 | TCONS_00050212-exon-scaffold_168-1510915933:85487..85565 | Clytia hemisphaerica | exon |
| TCONS_00050212-exon-scaffold_168-1575043694:85487..85565 | TCONS_00050212-exon-scaffold_168-1575043694:85487..85565 | Clytia hemisphaerica | exon |
| TCONS_00050212-exon-scaffold_168-1491911889:86314..87469 | TCONS_00050212-exon-scaffold_168-1491911889:86314..87469 | Clytia hemisphaerica | exon |
| TCONS_00050212-exon-scaffold_168-1510915933:86314..87469 | TCONS_00050212-exon-scaffold_168-1510915933:86314..87469 | Clytia hemisphaerica | exon |
| TCONS_00050212-exon-scaffold_168-1575043694:86314..87469 | TCONS_00050212-exon-scaffold_168-1575043694:86314..87469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:85487..87469 + |
Blast
The following BLAST results are available for this feature:
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