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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050213 ID=TCONS_00050213|Name=TCONS_00050213|organism=Clytia hemisphaerica|type=transcript|length=819bp
ATGTGAAAGGTTTGTTGCTGATGCAGGATTGGGAGCTTGCAGGTATATAA
TATGtAAGATGTCTAGTGAAACATCAGAGAAAACATTGAAGTCCCCTCCA
AagggtgatttgaaaataaccaAAGTATATCTCATTCTGTACAATGTTTC
TCTTATCATTGGCTGGGGTCTGATCTTTCTAAAAGCAATGATCTACATAT
CTGAAAAGAACTCTTTCTCTGGATTATACAATGAAGTTGAGTTCTGGCTC
AAAGTATCTCAAACAGCAGCCTTGTTAGAGTTATTACACTCTATATTTGG
TTTGGTCAGATCATCTATATTTACAACTTTACCACAAGTGGCTTCAAGAA
TCTTTGTCCTTTGGTTTATTGTGGATCCTCTCTTAATGCAAGACGAGGTT
GCTAAAGAGAGCATTGGATTCCCTATGTTGCTGTTTGCTTGGAGCATCAC
CGAGATAGTACGCTATTCATTCTACGCCAATGCATTAATGGATAATGTCC
CTTATTCTTTGCAATGGTGTCGTTATACGTTTTTCTTAGTGTTATACCCA
ATGGGTGTCACAGGTGAATTGATTTCCATTTATCATTCCATTCCATATGC
TACCAAGACAGGAAAGTTCTCTATCAGATTACCAAACAAATTGAATTTTG
GTTTCGATTTTGTTTGGCTTTGCTACGTCTTATATCCTGTCTATATTCCT
GGATTCTATCATTTGTTTACATACATGCTGCGCCAACGCAAGAAAGTTCT
TGGAAAACCGAAAGCTGAATAGATATCCTGTTATAAACTTTTGATATGAT
TTCATGTGATGAAAATAAT Run BLAST on NCBI transcript from alignment at scaffold_168:99534..102749+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050213 ID=TCONS_00050213|Name=TCONS_00050213|organism=Clytia hemisphaerica|type=transcript|length=3216bp|location=Sequence derived from alignment at scaffold_168:99534..102749+ (Clytia hemisphaerica)
ATGTGAAAGGTTTGTTGCTGATGCAGGATTGGGAGCTTGCAGGTATATAA
TATGGTAAGTTTATTTATCAATAAAAGAATTGCTAAATCAAGATGCCCTA
ATCTAAACCCCATTTTTCAGAATAAATGGCAGAAACCGTTGAGATCTCCA
GGGCAGACAAGACTCTTTTTTGAGGGACAGGGCAGATTTCGATCAAATTT
CAATCTCAGCTCAGGGGACAGgggcaaaaaagctcaaaatttccctaatt
ttacaaggttttcaaaatttttgagcaaGTTTGGCAATTTCAGGGGCAGG
GTTTTCAATTTTCCACTTGTGGGGGTAGCCATGAGATGTTCTGAAAACTG
GTGCTAAACCAGCCAATCATTTTAACATGGGGTGGATTGATTAGATGATT
GATGATTGTTGCTCAAATCCATCAGttacagtcagggaaatccctcaatt
gcggtagtaaatttttactgcaattgcagtataaacgtcaattttacaat
tttcatacACCGCAATTGCAGTACATTCAAGAatcagaattcaagattca
aggaaaaaataggcaatttttgtacataattgatcatatctttttaacgc
acagacaaaatattttttccctagatcagattcttttaataaagaaaagc
tttcttctcgtaagattttttatagtcgatgtttgtttatctttgtcgac
cagcactatatgtagtcgttataagcctttgtaggctaaacacgaatgaa
aactaccgcaattgcagtataccgcaattgagggatttccctgactgagt
TAGGGGGATGTTAATCaaaaattcgattgtcgaaccaattgaatactgtg
agtggtcctaaatctgacagccctgcctaaatctgacgtggtctttcaaa
gtCAGATAcaatctaaaataaaaacaaatcttttgctgtgacgcaacgaa
aataccaaagtgtcaactaaactgagaaatttgatacagttaaccagtcg
aaccaaataaTTAGGAATAATCGCTTCTTATACGAAACAtgatttttatt
gcaatatAGTATGtccaacgtcataaatgacaacaaaaGTAACTACTTTt
cttttacaactcacactttttaattataTACATTATTGACATCTTAACAT
TATAGCCATCtattgttagatgttttgaatttgttttgagattaacttgg
agagggagtgtttgtaaacatagaattcttTTCATAActgttatttgggg
ggtcggaagaAGGCAgtgctgtcggatttaggaccactcacggtataatC
AAGATCAATCAAAGTGATTGGCCGAGTTGATCACTGAAGTCATTCGAAGT
GATCAAGAGCGATCAATCAAACTCAATCGGAGTGATACATCAAGGTCCAT
ATTACAGATTTCTCTGTTGACAAAGATATTTTTTACTGACTGACTGTtgg
atatctggcctgtattttcacttactgtttaatctctttgacaacaaatt
tgttatgATAACtcaaccaagtttatcaatcatactttctgtcgtAACAT
GCCACGGTAACTTTCACTTATAGCGccccctttttaacttttttgttttc
attcaaaatggccGGATGCCNGTCTTCGAcacgacaaaaaactttcaaat
ttttttattggcattgggccgataagtttcagaccccctcccccttgcaC
TTATCtgccaaaatttttcaaaaccaacTTAACTACATcttcaaaaacac
aattttgtCCAATCATGTCCGCCATCGGGTTCGTCTCGCCTTCTCACCTT
CTCACCTGTCATCgttgaatttttgtctatttgcgccaacattgagtttg
ttcatacctgcattgatattgttaatcaaaacaaaagttaagaATACACT
ATGAAgttgcaacattttgaagtaAACGGCAGCACGTtggccaatgaaaa
aagagttttttcatCATAGCTaattcaaaactgtacttttaaagttgCAA
ATTTGTGCGCGAAGGTGAAAGTAAGTGAAATTGTAtatgctttcagtgga
gtttgtggatgaaatcaaaaagaaattggctgaaaagtttttcttcccaa
tacttgtttttttatcggtatgtagttgtttcaaaaatatgaaaaatttt
caggaaacattggaaaattgggaaaactCTCAAGGTCATAGGACttcttg
agattttaagggGACCTCGACCACCCCCTAATTTGTTTCCCCTAAGATAC
TTCCTCTAGAAAAGGAAGATGCTCAAAGGGTTAAGATACCTCTGTaccga
aaaattaagattttagcACTAAAAggtttttctctattttttatcaaaaa
ttacaaTATACAGTCTTCAGTTTTTGACGTAATTACGTCAGTTGCCAGTG
TCAGCGGTCGTAAGATTAAATAAcatatttgtaaatatttttatatttca
gtAAGATGTCTAGTGAAACATCAGAGAAAACATTGAAGTCCCCTCCAAag
ggtgatttgaaaataaccaAAGTATATCTCATTCTGTACAATGTTTCTCT
TATCATTGGCTGGGGTCTGATCTTTCTAAAAGCAATGATCTACATATCTG
AAAAGAACTCTTTCTCTGGATTATACAATGAAGTTGAGTTCTGGCTCAAA
GTATCTCAAACAGCAGCCTTGTTAGAGTTATTACACTCTATATTTGGTTT
GGTCAGATCATCTATATTTACAACTTTACCACAAGTGGCTTCAAGAATCT
TTGTCCTTTGGTTTATTGTGGATCCTCTCTTAATGCAAGACGAGGTTGCT
AAAGAGAGCATTGGATTCCCTATGTTGCTGTTTGCTTGGAGCATCACCGA
GATAGTACGCTATTCATTCTACGCCAATGCATTAATGGATAATGTCCCTT
ATTCTTTGCAATGGTGTCGTTATACGTTTTTCTTAGTGTTATACCCAATG
GGTGTCACAGGTGAATTGATTTCCATTTATCATTCCATTCCATATGCTAC
CAAGACAGGAAAGTTCTCTATCAGATTACCAAACAAATTGAATTTTGGTT
TCGATTTTGTTTGGCTTTGCTACGTCTTATATCCTGTCTATATTCCTGGA
TTCTATCATTTGTTTACATACATGCTGCGCCAACGCAAGAAAGTTCTTGG
AAAACCGAAAGCTGAATAGATATCCTGTTATAAACTTTTGATATGATTTC
ATGTGATGAAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050213-exon-scaffold_168-1491911889:99534..99587 | TCONS_00050213-exon-scaffold_168-1491911889:99534..99587 | Clytia hemisphaerica | exon |
| TCONS_00050213-exon-scaffold_168-1510915933:99534..99587 | TCONS_00050213-exon-scaffold_168-1510915933:99534..99587 | Clytia hemisphaerica | exon |
| TCONS_00050213-exon-scaffold_168-1575043694:99534..99587 | TCONS_00050213-exon-scaffold_168-1575043694:99534..99587 | Clytia hemisphaerica | exon |
| TCONS_00050213-exon-scaffold_168-1491911889:101985..102749 | TCONS_00050213-exon-scaffold_168-1491911889:101985..102749 | Clytia hemisphaerica | exon |
| TCONS_00050213-exon-scaffold_168-1510915933:101985..102749 | TCONS_00050213-exon-scaffold_168-1510915933:101985..102749 | Clytia hemisphaerica | exon |
| TCONS_00050213-exon-scaffold_168-1575043694:101985..102749 | TCONS_00050213-exon-scaffold_168-1575043694:101985..102749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:99534..102749 + |
Blast
BLAST of TCONS_00050213 vs. Swiss-Prot (Human)
Match: HACD1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Homo sapiens GN=HACD1 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.813e-55 Identity = 94/234 (40.17%), Postives = 146/234 (62.39%), Query Frame = 2
Query: 62 SSETSEKTLKSPPKGDLKI-TKVYLILYNVSLIIGWGLIFLKAMIYISEKNSFSGLYNEVEFWLKVSQTAALLELLHSIFGLVRSSIFTTLPQVASRIFVLWFI---VDPLLMQDEVAKESIGFPMLLFAWSITEIVRYSFYANALMDNVPYSLQWCRYTFFLVLYPMGVTGELISIYHSIPYATKTGKFSIRLPNKLNFGFDFVWLCYVLYPVYIPGFYHLFTYMLRQRKKVL 751
+SE E + L + +L Y++++ GW ++ + + + EK + GLY ++ LK QT ALLE++H + G+V +S+ T QV+SRIF++W I + P+ ++ V + L AW++TEI RYSFY +L+D++PY ++W RY FF++LYP+GV GEL++IY ++P+ KTG FSIRLPNK N FD+ + + YIP F L+ +MLRQR+KVL
Sbjct: 52 ASEAGEDREAPGERRRLGVLATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVV-------LFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 278
The following BLAST results are available for this feature:
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