TCONS_00050216 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050216
Unique Name	TCONS_00050216
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1406

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_168:107116..111570+

transcript sequence

>TCONS_00050216 ID=TCONS_00050216|Name=TCONS_00050216|organism=Clytia hemisphaerica|type=transcript|length=1406bp
tttagaggTATGAATTACTATAAAACAAAATGGAATAAGACTTTATGATA
AGGTGTCTGTTCTGTGACACTGGTATAATATTGGTTATTTACAAGGATGT
CGAAAAGAAAGACACTTCTAtcatggcttcaatcctttgcACCTGGTTTC
CTTGCCGCTCTTTTCTATGGCCTGGTTTCTGGTTCCATGTCCTTTCTTAA
CAAGGTTGTGTTGACAACATTCAAATTCCATTATCCGGATATCGTGATGC
TGGCCCAAGTTGTGCTGACGTCAATTGTGGTGGAATTGTGCAGGGTGACC
AAGATGTGCGACATTCCACAATGGACTTGGCAGAGGGGTAAAGAGTTCCT
GATACCAAGTCTGTGTTTTGCATTACACACGACACTGGCATTGGCTGCTT
TAGCAGAACTTTCCATCCCAATATATAATGTTCTGCGACGCATGTTGCCA
TTGGCAAGTCTTCTAATGGCAAGATATGTATTGAAAAAGACGCTCTCACG
AAAAACTTATGTCGCAATCGCTTTCACTGTTGTTGGCACTCTTATGGCTG
GCTTTGGCGATTTGCAGTTCAAATTATACGGTTATGTGGACGCCATTTTG
AGTGTGATGGCGCAATCTTTCTACTTGACTTACGTTCAAAAGACCGGTAT
CGAGAAAGGTGCATCGGCTCTTTCAGTTCTTCATTTGAACAGTATTAATT
GTATCCTACCGCTCATGATGTATACTTTGTGGAATGGTTCTCTGCTTCAA
GCCGCTCGCTTCGAAGGATTCAAAGACTCATCTTTCAACATGTCGTTCAT
GATCAATGTTTCCATGGGATGTGTGTTAAACTATTCGCTTTTCTTGTGTG
CAACTATGAATTCTGCTCTTACGACCAGTGTTGTCGGTGTTGTGAAAGGC
GTCATAACGTCCATCATTGGTTTCTTTACTTTTGGAGGAGTGCCACCCTC
CGCCCTTACACTGGGTGGTGTTTCAATGAACGCCCTTGGAGGTGCGCTTT
ATACATTCGCAAAATATCGAGAAAAGCAGATATTGTTGCAGAAAGCTAAG
ACTGAATTGCCTCTATAATGAGGTTTTTCATTCTGAtttataaaattgat
tttagcaaaatttagGTAGGCATACCATAAAAATTATGTATAGCAAAATC
CTTATTGGAAATAAGAAATGTACTTGGAATGTACCATTACCTCTCAAGTA
TTGTAATGGCGCCTATTTCATGGGCTTGCTCTAGTTGAAGTTTTCGTTTT
TGGGAGTAgctaaccctttaagtgccaatgtcgatattggacatgggcta
tataggaggacgaagccctcctgtaatgcggaaatcgtcatttttggtct
aactcgtaggaattggattgggcttcatggtcaagcaaaaaaaaaattca
aaagNN

Run BLAST on NCBI

transcript from alignment at scaffold_168:107116..111570+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050216 ID=TCONS_00050216|Name=TCONS_00050216|organism=Clytia hemisphaerica|type=transcript|length=4455bp|location=Sequence derived from alignment at scaffold_168:107116..111570+ (Clytia hemisphaerica)
tttagaggTATGAATTACTATAAAACAAAATGGAATAAGACTTTATGATA
AGGTGTCTGTTCTGTGACACTGGTATAATATTGGTTATTTACAAGGATGT
CGAAAAGAAAGACACTTCTAtcatggcttcaatcctttgcACCTGGTTTC
CTTGCCGCTCTTTTCTATGGCCTGGTTTCTGGTTCCATGTCCTTTCTTAA
CAAGGTAAGAGTTTGTGCGTTATAATAGTTTTTTCCTTCATGATTCTAAA
GCATTGGAGATACTTGGCACATTAGAAGTAGTTTGAGCTACTTTGGTAGG
GTATTTATCTATTTTATTCGAATCTCAAACAAACATAATGGAATACAATT
GAACATAATCAAAGCTTTCGATTGACACACCGTCTGGACCATTGCAATGT
cagataaaaacaaaaccccctcTGGTTATTCGAATTAAATTCTTATCCCC
CCTggagcttcgaataaccgggagtctactgtactttcaatctggcgttt
gtgtgaaagCTACACGGGTCACACGTTTTGgattcattttttataagaac
aaactatggcTGCTGGGGTAGCCAGGGAATAAAAAAGTGGCTTCATTACG
CATCCAAGAGTTTCAAATCTCTAGCACCTTGAAATCTATTCATtccttat
gttctcatatagtttgttcttataaaaaacgagaATATGTGATGAGAAAA
TCGTGTTTGGGTTTTTCACCATAGGTTGTGTTGACAACATTCAAATTCCA
TTATCCGGATATCGTGATGCTGGCCCAAGTTGTGCTGACGTCAATTGTGG
TGGAATTGTGCAGGGTGACCAAGATGTGCGACATTCCACAATGGACTTGG
CAGAGGTATAATAAACGGCACACAATTATAAGAGGTAGAAAATGATATCT
CGCAATGGGCTATGATAAAACACTTTAAAGATTTCAGGTCAGAAgatctt
caaaaaatttactTCGTAAACGCTATGGAAAATATTTCCTGGACTTGGAC
TGAATTTTAGGCTTTAGATTAAAATATCGTTTTCGTTTTAGGGGTAAAGA
GTTCCTGATACCAAGTCTGTGTTTTGCATTACACACGACACTGGCATTGG
CTGCTTTAGCAGAACTTTCCATCCCAATGTAAGTAGGCCTTTAATCCTCT
TTCGTAAAGGATCCTTTTTTTGTTTGAACATATTCCGCAAGAACCTTTGC
ATTAGCATGAAATTgcgattttctttatttctggttccaacaatatcaaa
tcaaaatcaaaaatcaagaattgaacTTTATAATCCATGAAAAGCAAAAG
TTCCATTCAATGAAAACATTGACTGACTTTCTCTCTTCAATTCGCATTTC
TCAGATATAATGTTCTGCGACGCATGTTGCCATTGGCAAGTCTTCTAATG
GCAAGATATGTATTGAAAAAGACGCTCTCACGAAAAACTTATGTCGCAAT
CGCTTTCACTGTTGTTGGCACTCTTATGGCTGGTATGTGATTATGAACCT
ATGACTTGAATATTTCTTGAACTCGAttagttttatggtcccttgcTTCA
GTTAAGGATGacttataaatctttttttaataactcgaaatttccttaac
ttttGTTCCTCTATGAGTTTTCCATAAACTCCATTGTTGATGTAATTATA
GTCCAGAACAGCGAGTTCTCGGGTTCTTTAGAAGGGAACAAGATGTCATT
ATTTTAAACAtgaatattaaaatttttattaaaaaaactttttaatcacT
TTAGGCTTTGGCGATTTGCAGTTCAAATTATACGGTTATGTGGACGCCAT
TTTGAGTGTGATGGCGCAATCTTTCTACTTGACTTACGTTCAAAAGACCG
GTATCGAGAAAGGTGCATCGGCTCTTTCAGTTCTTCATTTGAACAGTATT
AATTGTATCCTACCGCTCATGATGTATACTTTGTGGAATGGTTCTCTGCT
TCAAGCCGCTCGCTTCGAAGGATTCAAAGACTCATCTTTCAACGTAAGTT
GAAATGATCCATTCTCTCTTTTCAGGAATTCTTTATTTCATCTTTTCTTG
AGaatagtttaggtataaacaaAAATCAAATGTCTAAAATACTCTGAGGC
TTTTGTTATGTGATATATGTTctgattgtttttttctgagcCAATGAGCT
TTCGCATAGAGGTGGTGTACCTTTCGGCTCACTCAGCTTTTTGATGGTGG
CAGAGAAATCTACCCTTATCCATGACGAGCCAACAAAagcgaaattttca
atttttccacACCTTTATTTTTCAGATGTCGTTCATGATCAATGTTTCCA
TGGGATGCGTGTTAAACTATTCGCTTTTCTTGTGTGCAACTATGAATTCT
GCTCTTACGACCAGGTAAAATTATAGACGATTTTTGTTAGGACCACTGAA
GTTTGGCCTGAGGCTTGTCTTTTCGAAAGTTTTCAGGCTAATTTAGCTTT
ATTACTCACCTGAAGAGTGTCAAAAAACTAGGAACCGTCATTCACTTTGT
CATATTTGAGATCAGACTACTCTAGATTTTCTTTCTAAGGCGCTTTGGAC
AAACAAGACAAATTATGTTTACCTTGTATGGNGTACGTTCAAAAGACCGG
TATCGAGAAAGGTGCATCGGCTCTTTCAGTTCTTCATTTGAACAGTATTA
ATTGTATCCTACCACTCATGATGTATACTTTGTGGAATGGTTCTCTGCTT
CAAGCCGCTCGCTTCGAAGGATTCAAAGACTCATCTTTCAACGTAAGTTA
AAATGATCCATTCTCTCTTTTCAGGAATTCTTTATTTCGTCTTTTCCTAA
GAAAAGTTTAggtataaacaaaaatattaaatacTCTGAGGCCTTTGTGA
TGAATGTTCTGATTGTTTTCTTTCTGAGCCAATGAGCTTTCACGTAGAGG
TGGTGTACCTTTCGGCTCACTCAGCTTTTTGATGGTGGCAGAGAAATCTA
CCCTTACCCATGACGAGCCAACAAAagcgaaatttcaatttcaaaatttt
tccacaCCTTTATTTTGTAGATGTCGTTCATGATCAATGTTTCCATGGGA
TGTGTGTTAAACTATTCGCTTTTCTTGTGTGCAACTATGAATTCTGCTCT
TACGACCAGGTGAAATTATAAACGATTTTTGTTAGGACCACTGAAGTTTG
GCCTGAGGCTTGTCTTTTCGAAAGTTTTCAGGCTAATTTAGCTTTATTAC
TCACCTGAAGAGTGTAAAAAAACTAGGAACCGTCATTCACTTTGTCATAT
TTGAGATCAGACTACTCTAGATTTTCTTTCTAAGGCGCTTTGGACAAACA
AGACAAATTATGTTTACCTTGTATGGGTCAGTGCTTGTTTTTCTAGGAAC
AACACCTATCACTATAATGCACCCCCGCCCCACTTTTCTTCCCTTCAACT
ATTCTTCCCTTCAACTATTCGATCACATTCACATACTACGTACGCACTGA
GGGGAAAGTAGCCCATTTTTTTGCATGTAAAATTCTGTGAAAGAGATAAA
GAGTGAATTGCTGTCCTCGCGAAATAATAAGCGACCTTAAACAAATACAT
ttcatttttgtgtttttgactGCTCATTCTCAAtgcaaaaacataaaaag
tttctaattaagttgtctttttgaaATATAGGCCCAATCCAGACGATtgc
ttttcaatttcttttcgtTAGGGAGTGGAAAAAGTACTTACCAACAAGGG
GGTATAGGTGTATATACGTTCGCTTGCGTACACCTCCCTTCGTGTAGTAG
AGTAcacgatttttgaaattttgtacgTACGTACTATGTTGACGGACCCT
TAATGCAAATGATTAACCTGAAGTGATTAAAATACTCATCGTCAATGAAT
ACAGTGAACACTTGATGGATTCTGAGAAGTCTTTTTAATTAATTCGATTT
TATTTAATCTTTAATTGTTCTTTTCAGTGTTGTCGGTGTTGTGAAAGGCG
TCATAACGTCCATCATTGGTTTCTTTACTTTTGGAGGAGTGCCACCCTCC
GCCCTTACACTGGGTGGTGTTTCAATGAACGCCCTTGGAGGTGCGCTTTA
TACATTCGCAAAATATCGAGAAAAGCAGATATTGTTGCAGAAAGCTAAGA
CTGAATTGCCTCTATAATGAGGTTTTTCATTCTGAtttataaaattgatt
ttagcaaaatttagGTAGGCATACCATAAAAATTATGTATAGCAAAATCC
TTATTGGAAATAAGAAATGTACTTGGAATGTACCATTACCTCTCAAGTAT
TGTAATGGCGCCTATTTCATGGGCTTGCTCTAGTTGAAGTTTTCGTTTTT
GGGAGTAgctaaccctttaagtgccaatgtcgatattggacatgggctat
ataggaggacgaagccctcctgtaatgcggaaatcgtcatttttggtcta
actcgtaggaattggattgggcttcatggtcaagcaaaaaaaaaattcaa
aagNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031814	XLOC_031814	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_168	supercontig	scaffold_168:107116..111570 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.95079	8.93946	2.59635	1.66457	5.11267	1.01977	3.74013	6.96694e-06	11.7396	14.8807	16.7527	10.1954	11.1299	11.061	8.63387	10.4546	19.9232	16.6206	14.7808	14.1267	13.5803	15.5783	37.1154	31.7154	2.22097	1.36542	19.9649	12.8732	28.6724	21.6906

Blast

[Close]

BLAST of TCONS_00050216 vs. Swiss-Prot (Human)
Match: S35D3 (Solute carrier family 35 member D3 OS=Homo sapiens GN=SLC35D3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.303e-32
Identity = 88/296 (29.73%), Postives = 156/296 (52.70%), Query Frame = 1

Query:  145 GFLAALFYGLVSGSMSFLNKVVLTTFKFHYPDIVMLAQVVLTSIVVELCRVTKMCDIPQWTWQRGKEFLIPSLCFXXXXXXXXXXXXXXSIPIYNVLRRMLPLASLLMARYVLKK-TLSRKTYVAIAFTVVGTLMAGFGDLQFKLYGYVDAILSVMAQSFYLTYVQKTGIEKGASALSVLHLNSINCILPLMMYTLWNGSLLQAARFEGFKDSSFNMSFMINVSMGCVLNYSLFLCATMNSALTTSVVGVVKGVITSIIGFFTFGGVPPSALTLGGVSMNALGGALYTFAKYREKQ 1029
            G   A+ +G+ SGS++ L K +++ ++F +  +V        ++ +EL R   +  +P +     + F   ++   L ++L L +L  LS+P+Y V +R LPL ++L+   VLK    S     A+  T  G  +AG GDL     GYV  +L+V+  + YL  +QK   +     L+  ++ +++    L++ +  +   + A  F G+KD +    F+  + +GC +N++   C  +NSA+TTS VGVVK + T  +G   F  V P++L + GV +N LG  +Y  AK+ E +
Sbjct:   11 GISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVLITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVAKFMETR 306

The following BLAST results are available for this feature:

BLAST of TCONS_00050216 vs. Swiss-Prot (Human)

BLAST of TCONS_00050216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S35D3	2.303e-32	29.73	Solute carrier family 35 member D3 OS=Homo sapiens...	[more]

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TCONS_00050216 (transcript) - C. hemisphaerica