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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050217 ID=TCONS_00050217|Name=TCONS_00050217|organism=Clytia hemisphaerica|type=transcript|length=872bp
TCATTCACTTTGTCATATTTGAGATCAGACTACTCTAGATTTTCTTTCTA
AGGCGCTTTGGACAAACAAGACAAATTATGTTTACCTTGTATGGNGTACG
TTCAAAAGACCGGTATCGAGAAAGGTGCATCGGCTCTTTCAGTTCTTCAT
TTGAACAGTATTAATTGTATCCTACCACTCATGATGTATACTTTGTGGAA
TGGTTCTCTGCTTCAAGCCGCTCGCTTCGAAGGATTCAAAGACTCATCTT
TCAACATGTCGTTCATGATCAATGTTTCCATGGGATGTGTGTTAAACTAT
TCGCTTTTCTTGTGTGCAACTATGAATTCTGCTCTTACGACCAGTGTTGT
CGGTGTTGTGAAAGGCGTCATAACGTCCATCATTGGTTTCTTTACTTTTG
GAGGAGTGCCACCCTCCGCCCTTACACTGGGTGGTGTTTCAATGAACGCC
CTTGGAGGTGCGCTTTATACATTCGCAAAATATCGAGAAAAGCAGATATT
GTTGCAGAAAGCTAAGACTGAATTGCCTCTATAATGAGGTTTTTCATTCT
GAtttataaaattgattttagcaaaatttagGTAGGCATACCATAAAAAT
TATGTATAGCAAAATCCTTATTGGAAATAAGAAATGTACTTGGAATGTAC
CATTACCTCTCAAGTATTGTAATGGCGCCTATTTCATGGGCTTGCTCTAG
TTGAAGTTTTCGTTTTTGGGAGTAgctaaccctttaagtgccaatgtcga
tattggacatgggctatataggaggacgaagccctcctgtaatgcggaaa
tcgtcatttttggtctaactcgtaggaattggattgggcttcatggtcaa
gcaaaaaaaaaattcaaaagNN Run BLAST on NCBI transcript from alignment at scaffold_168:109603..111570+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050217 ID=TCONS_00050217|Name=TCONS_00050217|organism=Clytia hemisphaerica|type=transcript|length=1968bp|location=Sequence derived from alignment at scaffold_168:109603..111570+ (Clytia hemisphaerica)
TCATTCACTTTGTCATATTTGAGATCAGACTACTCTAGATTTTCTTTCTA
AGGCGCTTTGGACAAACAAGACAAATTATGTTTACCTTGTATGGNGTACG
TTCAAAAGACCGGTATCGAGAAAGGTGCATCGGCTCTTTCAGTTCTTCAT
TTGAACAGTATTAATTGTATCCTACCACTCATGATGTATACTTTGTGGAA
TGGTTCTCTGCTTCAAGCCGCTCGCTTCGAAGGATTCAAAGACTCATCTT
TCAACGTAAGTTAAAATGATCCATTCTCTCTTTTCAGGAATTCTTTATTT
CGTCTTTTCCTAAGAAAAGTTTAggtataaacaaaaatattaaatacTCT
GAGGCCTTTGTGATGAATGTTCTGATTGTTTTCTTTCTGAGCCAATGAGC
TTTCACGTAGAGGTGGTGTACCTTTCGGCTCACTCAGCTTTTTGATGGTG
GCAGAGAAATCTACCCTTACCCATGACGAGCCAACAAAagcgaaatttca
atttcaaaatttttccacaCCTTTATTTTGTAGATGTCGTTCATGATCAA
TGTTTCCATGGGATGTGTGTTAAACTATTCGCTTTTCTTGTGTGCAACTA
TGAATTCTGCTCTTACGACCAGGTGAAATTATAAACGATTTTTGTTAGGA
CCACTGAAGTTTGGCCTGAGGCTTGTCTTTTCGAAAGTTTTCAGGCTAAT
TTAGCTTTATTACTCACCTGAAGAGTGTAAAAAAACTAGGAACCGTCATT
CACTTTGTCATATTTGAGATCAGACTACTCTAGATTTTCTTTCTAAGGCG
CTTTGGACAAACAAGACAAATTATGTTTACCTTGTATGGGTCAGTGCTTG
TTTTTCTAGGAACAACACCTATCACTATAATGCACCCCCGCCCCACTTTT
CTTCCCTTCAACTATTCTTCCCTTCAACTATTCGATCACATTCACATACT
ACGTACGCACTGAGGGGAAAGTAGCCCATTTTTTTGCATGTAAAATTCTG
TGAAAGAGATAAAGAGTGAATTGCTGTCCTCGCGAAATAATAAGCGACCT
TAAACAAATACATttcatttttgtgtttttgactGCTCATTCTCAAtgca
aaaacataaaaagtttctaattaagttgtctttttgaaATATAGGCCCAA
TCCAGACGATtgcttttcaatttcttttcgtTAGGGAGTGGAAAAAGTAC
TTACCAACAAGGGGGTATAGGTGTATATACGTTCGCTTGCGTACACCTCC
CTTCGTGTAGTAGAGTAcacgatttttgaaattttgtacgTACGTACTAT
GTTGACGGACCCTTAATGCAAATGATTAACCTGAAGTGATTAAAATACTC
ATCGTCAATGAATACAGTGAACACTTGATGGATTCTGAGAAGTCTTTTTA
ATTAATTCGATTTTATTTAATCTTTAATTGTTCTTTTCAGTGTTGTCGGT
GTTGTGAAAGGCGTCATAACGTCCATCATTGGTTTCTTTACTTTTGGAGG
AGTGCCACCCTCCGCCCTTACACTGGGTGGTGTTTCAATGAACGCCCTTG
GAGGTGCGCTTTATACATTCGCAAAATATCGAGAAAAGCAGATATTGTTG
CAGAAAGCTAAGACTGAATTGCCTCTATAATGAGGTTTTTCATTCTGAtt
tataaaattgattttagcaaaatttagGTAGGCATACCATAAAAATTATG
TATAGCAAAATCCTTATTGGAAATAAGAAATGTACTTGGAATGTACCATT
ACCTCTCAAGTATTGTAATGGCGCCTATTTCATGGGCTTGCTCTAGTTGA
AGTTTTCGTTTTTGGGAGTAgctaaccctttaagtgccaatgtcgatatt
ggacatgggctatataggaggacgaagccctcctgtaatgcggaaatcgt
catttttggtctaactcgtaggaattggattgggcttcatggtcaagcaa
aaaaaaaattcaaaagNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050217-exon-scaffold_168-1491911889:109603..109857 | TCONS_00050217-exon-scaffold_168-1491911889:109603..109857 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1510915933:109603..109857 | TCONS_00050217-exon-scaffold_168-1510915933:109603..109857 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1575043694:109603..109857 | TCONS_00050217-exon-scaffold_168-1575043694:109603..109857 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1491911889:110136..110224 | TCONS_00050217-exon-scaffold_168-1491911889:110136..110224 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1510915933:110136..110224 | TCONS_00050217-exon-scaffold_168-1510915933:110136..110224 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1575043694:110136..110224 | TCONS_00050217-exon-scaffold_168-1575043694:110136..110224 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1491911889:111043..111570 | TCONS_00050217-exon-scaffold_168-1491911889:111043..111570 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1510915933:111043..111570 | TCONS_00050217-exon-scaffold_168-1510915933:111043..111570 | Clytia hemisphaerica | exon |
| TCONS_00050217-exon-scaffold_168-1575043694:111043..111570 | TCONS_00050217-exon-scaffold_168-1575043694:111043..111570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:109603..111570 + |
Blast
The following BLAST results are available for this feature:
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