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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050221 ID=TCONS_00050221|Name=TCONS_00050221|organism=Clytia hemisphaerica|type=transcript|length=1047bp
GTTTTATACCGGGTGTGCCTCAAAAAACGCCTCTATTGTCCAATTTTTGA
CGTACATCTTTCTATTGAACTGCtaaactattttttcattaagGAGGTGA
TGTGAATGCATAACAATTAATATTGTTTTACTTCAACtgattttgctttt
cttttctttttagtttCTTTTAATCTTCAGAAAAGCTGCATTAGGGGAAT
TACAATGTGAAGGCCTGAGTCAGTTGGCACAGCTATCTGAAATTGATGTT
GATCAAACTGGCGTTGGAGGTGCAAAGGATTTCTTTGAAGCCAAAGCAAA
ACAAGTGAATGCTTCAAGCAAATTTGAAGATGAAATCAGAAAAGAGCAGG
AAGATCGTAAAAAAGAGTTGGAAGAAGCTAGGGCAAGAAAAGCAGCATTC
AAAGCCAAGGCTCAATCTTTTGATAACTTATGAGACACTCGAACTGTTAA
ACTTTGGGTATCCTATTGATGTACAGTATTTTAAAATACTATTTAAAAGC
CTACACCATTTTGCAAggtttaaaagtttgttttacTCTGTACATAATTT
ATTACGATTAGAcacttttaaacatttttttggtgGTTTTATAAAGAGCT
TAGTTTTGATAAAGAAGAATAATCATAAGTTTTCTTTCACATCAATTGCT
ACACATGTTCTGTTCAATTTTTACTAAACTTTATTTTCTATTGGGTTTTC
GATTTCAACAGCATAGGTATCTTTTGTATCTTTTTGAAATGATATAGCTG
TCCGTTTTTTACATTggattttttcataatttttctattttctagtcCCT
CTTTGCCTAAAGTGTACGTTTATTGAattgtaaaatatataaaaaataac
ttttctatAATTTTAGAGAATAATATTTCTAGCTATAAATATATTTCTAG
CTAAGTGTATCTTTAAGAATCATTTTATGAATAAACGAAAACCTCCCCCC
TCCCCATCCCAATTGTGAATTGATAGTGTGAAAGACATGTTTGAATAATC
TGATTCATACGTCACATTCCAAAAATGCGTTATAtttagagaatttg Run BLAST on NCBI transcript from alignment at scaffold_168:132215..133581+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050221 ID=TCONS_00050221|Name=TCONS_00050221|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at scaffold_168:132215..133581+ (Clytia hemisphaerica)
GTTTTATACCGGGTGTGCCTCAAAAAACGCCTCTATTGTCCAATTTTTGA
CGTACATCTTTCTATTGAACTGCtaaactattttttcattaagGAGGTGA
TGTGAATGCATAACAATTAATATTGTTTTACTTCAACtgattttgctttt
cttttctttttagtttCTTTTAATCTTCAGAAAAGCTGCATTAGGGGAAT
TACAATGTGAAGGCCTGAGTCAGTTGGCACAGCTATCTGAAATTGATGTT
GATCAAACTGGCGTTGGAGGtaatgttttgaaataaaaatatttttatac
ttGGAAGCCTTATTGCAATTATGATCAAGGATGATCGTATGATCATATTC
AGCAGTACTTATCCtcattggaactaattttcattgttttgttgaagaca
attttcatttgaaagttATAAAGACCTATCAGAAAATGAAGGAATGTAAT
TAAGGTTAAATTTAGTTTCCATTAGCAACAAATTTAGTTGCTATTTAAAA
ACCCTAATCACAAATGAATTTTATTCCCTAATTTAAGTAGAATTTTGATT
GTTCTTTTTCccaattaaaattttcatcttaTTTTACAGGTGCAAAGGAT
TTCTTTGAAGCCAAAGCAAAACAAGTGAATGCTTCAAGCAAATTTGAAGA
TGAAATCAGAAAAGAGCAGGAAGATCGTAAAAAAGAGTTGGAAGAAGCTA
GGGCAAGAAAAGCAGCATTCAAAGCCAAGGCTCAATCTTTTGATAACTTA
TGAGACACTCGAACTGTTAAACTTTGGGTATCCTATTGATGTACAGTATT
TTAAAATACTATTTAAAAGCCTACACCATTTTGCAAggtttaaaagtttg
ttttacTCTGTACATAATTTATTACGATTAGAcacttttaaacatttttt
tggtgGTTTTATAAAGAGCTTAGTTTTGATAAAGAAGAATAATCATAAGT
TTTCTTTCACATCAATTGCTACACATGTTCTGTTCAATTTTTACTAAACT
TTATTTTCTATTGGGTTTTCGATTTCAACAGCATAGGTATCTTTTGTATC
TTTTTGAAATGATATAGCTGTCCGTTTTTTACATTggattttttcataat
ttttctattttctagtcCCTCTTTGCCTAAAGTGTACGTTTATTGAattg
taaaatatataaaaaataacttttctatAATTTTAGAGAATAATATTTCT
AGCTATAAATATATTTCTAGCTAAGTGTATCTTTAAGAATCATTTTATGA
ATAAACGAAAACCTCCCCCCTCCCCATCCCAATTGTGAATTGATAGTGTG
AAAGACATGTTTGAATAATCTGATTCATACGTCACATTCCAAAAATGCGT
TATAtttagagaatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050221-exon-scaffold_168-1491911889:132215..132483 | TCONS_00050221-exon-scaffold_168-1491911889:132215..132483 | Clytia hemisphaerica | exon |
| TCONS_00050221-exon-scaffold_168-1510915933:132215..132483 | TCONS_00050221-exon-scaffold_168-1510915933:132215..132483 | Clytia hemisphaerica | exon |
| TCONS_00050221-exon-scaffold_168-1575043694:132215..132483 | TCONS_00050221-exon-scaffold_168-1575043694:132215..132483 | Clytia hemisphaerica | exon |
| TCONS_00050221-exon-scaffold_168-1491911889:132804..133581 | TCONS_00050221-exon-scaffold_168-1491911889:132804..133581 | Clytia hemisphaerica | exon |
| TCONS_00050221-exon-scaffold_168-1510915933:132804..133581 | TCONS_00050221-exon-scaffold_168-1510915933:132804..133581 | Clytia hemisphaerica | exon |
| TCONS_00050221-exon-scaffold_168-1575043694:132804..133581 | TCONS_00050221-exon-scaffold_168-1575043694:132804..133581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:132215..133581 + |
Blast
The following BLAST results are available for this feature:
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