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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050289 ID=TCONS_00050289|Name=TCONS_00050289|organism=Clytia hemisphaerica|type=transcript|length=1482bp
CCCACTCTTACCTTTCCCAACTTATTCCCTATTAAattcccgatccaatg
aggggtcaaccatctcttaactcctttccaatctcgagatatcgccttAT
TGAGTTTCTTAGCTATCTTCCGTAAAAGCCCGGGCTATAAAATATACGGT
CTATCTATTAAAGAATATTCCCGATATAAACAATGAATAAAGTCAGGTTA
AGAAGTTTCCATCAGTTGTAGGTTCTCAAGTAAGGATGTCAAAAAATAGT
AACTATCAAGGTCTGTTGGTCAGAGTTTTCCAAATAATATACTGACAATT
TTGTGATACTACAGCATAGGTACAGATAGAGGTATGGTTCtgaatctttt
aaaaataatttgaaacagGGCATATAAGATATAcataacaaaatcaaaat
aagacACACCAAAAGCAtgtcaaaaatattatattCATCACATACTTGAT
TTAATGCAGAATCATTAAGGTCATCATGGAGTTAAATGAGAATTCTTCAA
TCAACATCAAGCCCATACTATCTGATAATTTGTCAAAAGATATGGAAACA
ACAAATGCTTGTATTGGTACAATCATTGATAAAAGAGAgacaaaaaattt
gatgactctttttaaagataattttCCCTTGGATAGCTCATTGCAACATC
TGAAAAGAGTTGGTGGTTCTAAATCAAAAGGAACATTAGACTTCATAATT
TGTGGAGAAGACGACCCTGAAAAGGATAGGATACTTGCCAATGAAAAtat
accaaaatatttgaaagataTTCGTATTTCAAAAGTTCCATCCTTTTGTC
CATTAACAAGAAAACAGTTTGAACAAGCTATAGAGTATTGGCCATGCACT
TTtcatgaaaataaacaaataaaagaacTAGTTGAAGGTAGAAATATGAC
CACTGAAAAACGTAAACAgatagcaaaatattttgcaatattgaataaat
atgaAAACTCCGAAGATTGCTGTTTTTGCCTGGTTGTGAATCCTAAAACA
GAAACCATTCTTGCAATAGCACCTGATTGCTCACATCAAGGAGACCCTCT
TCAGCATTCCATAATGGTGGCTATTGATATGGTTGCTTGGTTACAAGGAG
GAGGCGTTTATAAGAATTTACAGTACATGAAAAGTGAAGCCATTGATAGG
GCTATATCGGTATCAAAAACTAGTACTTCAaaaactcctgaccacttgca
gAATATGGATGGTTACTTGTGTACAGATTTTGAAGTGTATTCCAACGCTG
AACCATGTGTCATGTGCAGCATGGCTCTTTTACATTCTCGTGTATCCAAA
GtatttttttccatgaaaaactCTCAGAGTGGAGGCTTAACTAGTGTGTT
TCGTTTACATACTGAAGAAGGGTTAAACCACCATTTCGAGGCGTACTGTG
TAGATTTTTAATCCTCCATTCATTATTCATTAGGctaattatgtttttat
atttagaatggattttattttttaatgacaag Run BLAST on NCBI protein sequence of TCONS_00050289-protein >TCONS_00050289-protein ID=TCONS_00050289-protein|Name=TCONS_00050289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MELNENSSINIKPILSDNLSKDMETTNACIGTIIDKRETKNLMTLFKDNF
PLDSSLQHLKRVGGSKSKGTLDFIICGEDDPEKDRILANENIPKYLKDIR
ISKVPSFCPLTRKQFEQAIEYWPCTFHENKQIKELVEGRNMTTEKRKQIA
KYFAILNKYENSEDCCFCLVVNPKTETILAIAPDCSHQGDPLQHSIMVAI
DMVAWLQGGGVYKNLQYMKSEAIDRAISVSKTSTSKTPDHLQNMDGYLCT
DFEVYSNAEPCVMCSMALLHSRVSKVFFSMKNSQSGGLTSVFRLHTEEGL
NHHFEAYCVDF Run BLAST on NCBI transcript from alignment at scaffold_168:172890..174371 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050289 ID=TCONS_00050289|Name=TCONS_00050289|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at scaffold_168:172890..174371 (Clytia hemisphaerica)
cttgtcattaaaaaataaaatccattctaaatataaaaacataattagCC
TAATGAATAATGAATGGAGGATTAAAAATCTACACAGTACGCCTCGAAAT
GGTGGTTTAACCCTTCTTCAGTATGTAAACGAAACACACTAGTTAAGCCT
CCACTCTGAGagtttttcatggaaaaaaataCTTTGGATACACGAGAATG
TAAAAGAGCCATGCTGCACATGACACATGGTTCAGCGTTGGAATACACTT
CAAAATCTGTACACAAGTAACCATCCATATTctgcaagtggtcaggagtt
ttTGAAGTACTAGTTTTTGATACCGATATAGCCCTATCAATGGCTTCACT
TTTCATGTACTGTAAATTCTTATAAACGCCTCCTCCTTGTAACCAAGCAA
CCATATCAATAGCCACCATTATGGAATGCTGAAGAGGGTCTCCTTGATGT
GAGCAATCAGGTGCTATTGCAAGAATGGTTTCTGTTTTAGGATTCACAAC
CAGGCAAAAACAGCAATCTTCGGAGTTTtcatatttattcaatattgcaa
aatattttgctatcTGTTTACGTTTTTCAGTGGTCATATTTCTACCTTCA
ACTAgttcttttatttgtttattttcatgaAAAGTGCATGGCCAATACTC
TATAGCTTGTTCAAACTGTTTTCTTGTTAATGGACAAAAGGATGGAACTT
TTGAAATACGAAtatctttcaaatattttggtataTTTTCATTGGCAAGT
ATCCTATCCTTTTCAGGGTCGTCTTCTCCACAAATTATGAAGTCTAATGT
TCCTTTTGATTTAGAACCACCAACTCTTTTCAGATGTTGCAATGAGCTAT
CCAAGGGaaaattatctttaaaaagagtcatcaaattttttgtcTCTCTT
TTATCAATGATTGTACCAATACAAGCATTTGTTGTTTCCATATCTTTTGA
CAAATTATCAGATAGTATGGGCTTGATGTTGATTGAAGAATTCTCATTTA
ACTCCATGATGACCTTAATGATTCTGCATTAAATCAAGTATGTGATGaat
ataatatttttgacaTGCTTTTGGTGTgtcttattttgattttgttatgT
ATATCTTATATGCCctgtttcaaattatttttaaaagattcaGAACCATA
CCTCTATCTGTACCTATGCTGTAGTATCACAAAATTGTCAGTATATTATT
TGGAAAACTCTGACCAACAGACCTTGATAGTTACTATTTTTTGACATCCT
TACTTGAGAACCTACAACTGATGGAAACTTCTTAACCTGACTTTATTCAT
TGTTTATATCGGGAATATTCTTTAATAGATAGACCGTATATTTTATAGCC
CGGGCTTTTACGGAAGATAGCTAAGAAACTCAATaaggcgatatctcgag
attggaaaggagttaagagatggttgacccctcattggatcgggaatTTA
ATAGGGAATAAGTTGGGAAAGGTAAGAGTGGG Coding sequence (CDS) from alignment at scaffold_168:172890..174371 >TCONS_00050289 ID=TCONS_00050289|Name=TCONS_00050289|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_168:172890..174371 (Clytia hemisphaerica)
TTAAAAATCTACACAGTACGCCTCGAAATGGTGGTTTAACCCTTCTTCAG
TATGTAAACGAAACACACTAGTTAAGCCTCCACTCTGAGagtttttcatg
gaaaaaaataCTTTGGATACACGAGAATGTAAAAGAGCCATGCTGCACAT
GACACATGGTTCAGCGTTGGAATACACTTCAAAATCTGTACACAAGTAAC
CATCCATATTctgcaagtggtcaggagttttTGAAGTACTAGTTTTTGAT
ACCGATATAGCCCTATCAATGGCTTCACTTTTCATGTACTGTAAATTCTT
ATAAACGCCTCCTCCTTGTAACCAAGCAACCATATCAATAGCCACCATTA
TGGAATGCTGAAGAGGGTCTCCTTGATGTGAGCAATCAGGTGCTATTGCA
AGAATGGTTTCTGTTTTAGGATTCACAACCAGGCAAAAACAGCAATCTTC
GGAGTTTtcatatttattcaatattgcaaaatattttgctatcTGTTTAC
GTTTTTCAGTGGTCATATTTCTACCTTCAACTAgttcttttatttgttta
ttttcatgaAAAGTGCATGGCCAATACTCTATAGCTTGTTCAAACTGTTT
TCTTGTTAATGGACAAAAGGATGGAACTTTTGAAATACGAAtatctttca
aatattttggtataTTTTCATTGGCAAGTATCCTATCCTTTTCAGGGTCG
TCTTCTCCACAAATTATGAAGTCTAATGTTCCTTTTGATTTAGAACCACC
AACTCTTTTCAGATGTTGCAATGAGCTATCCAAGGGaaaattatctttaa
aaagagtcatcaaattttttgtcTCTCTTTTATCAATGATTGTACCAATA
CAAGCATTTGTTGTTTCCATATCTTTTGACAAATTATCAGATAGTATGGG
CTTGATGTTGATTGAAGAATTCTCATTTAACTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050289-exon-scaffold_168-1491911889:172890..174371 | TCONS_00050289-exon-scaffold_168-1491911889:172890..174371 | Clytia hemisphaerica | exon |
| TCONS_00050289-exon-scaffold_168-1510915933:172890..174371 | TCONS_00050289-exon-scaffold_168-1510915933:172890..174371 | Clytia hemisphaerica | exon |
| TCONS_00050289-exon-scaffold_168-1575043694:172890..174371 | TCONS_00050289-exon-scaffold_168-1575043694:172890..174371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:172890..174371 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002125 | CMP_dCMP_dom |
| IPR016193 | Cytidine_deaminase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00050289 vs. Swiss-Prot (Human)
Match: ADAT3 (Probable inactive tRNA-specific adenosine deaminase-like protein 3 OS=Homo sapiens GN=ADAT3 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.119e-48 Identity = 104/318 (32.70%), Postives = 161/318 (50.63%), Query Frame = 2
Query: 488 ENSSINIKPILSDNLSKDMETTNACIGTIIDKRETKNLMTLFKDNFPLDSSLQHLKRVGGSKSKGT---LDFIICGEDDPEKDRILANENIPKYLKDIR------ISKVPSFCPLTRKQFEQAIEYWPCTFHENKQIKELVEGRNMTTEKRKQIAKYF-----AILNKYENSEDCCFCLVVNPKTETILAIAPDCSHQGDPLQHSIMVAIDMVAWLQGGGVYKNLQYMK-SEAIDRAISVSKTSTSKTPDHLQNMDGYLCTDFEVYSNAEPCVMCSMALLHSRVSKVFFSMKNSQSGGLTSVFRLHTEEGLNHHFEAY 1396
E + P+LS+ S D+E A ++DKR+T L+ PL + HLKRV S+ G+ L+ ++C R LA E +P+ D R + VP+ PLTR QFE+A +WP +FHE+KQ+ + GR +T++R + + A +VV+P ++ +LA DCS +PL H++MV +D+VA QG G Y + S A A + + D ++ YLCT +++Y EPC MC+MAL+H+R+ +VF+ S G L + FR+H LNH F+ +
Sbjct: 22 EPAPWQALPVLSEKQSGDVELVLAYAAPVLDKRQTSRLLKEVSALHPLPAQ-PHLKRVRPSRDAGSPHALEMLLCLAGPASGPRSLA-ELLPRPAVDPRGLGQPFLVPVPARPPLTRGQFEEARAHWPTSFHEDKQVTSALAGRLFSTQERAAMQSHMERAVWAARRAAARGLRAVGAVVVDPASDRVLATGHDCSCADNPLLHAVMVCVDLVARGQGRGTYDFRPFPACSFAPAAAPQAVRAGAVRKLDADEDGLPYLCTGYDLYVTREPCAMCAMALVHARILRVFYGAP-SPDGALGTRFRIHARPDLNHRFQVF 336
The following BLAST results are available for this feature:
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