|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050253 ID=TCONS_00050253|Name=TCONS_00050253|organism=Clytia hemisphaerica|type=transcript|length=5075bpRun BLAST on NCBI transcript from alignment at scaffold_168:239788..256907- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050253 ID=TCONS_00050253|Name=TCONS_00050253|organism=Clytia hemisphaerica|type=transcript|length=17120bp|location=Sequence derived from alignment at scaffold_168:239788..256907- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050253 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 244.973 bits (624), Expect = 8.692e-65 Identity = 148/393 (37.66%), Postives = 207/393 (52.67%), Query Frame = 2
Query: 803 VTPVHCNYSEWSQWAPCTITCGTNGLTSRMREPNNPSASFGGEDCSRLGPATEQKNCPNIPCPIDGIWSPWTSFSNCSVTVGEGVRARERFCTPP--QYGGRPCPGEAKQTESCTIAPPPVDCGFTEWSEWGACDKTCGEGKQERHREGGHPLAQYGGKQCEGPVSEVQECSTNVPCPMDGGYTQWSLWSDCSKTCGGGSKARKRTCTNPEPMNGGLDCLDQHLGPETDQMECNPTCCPVDGGLSEWTSWSTCDVTCGSGERQRYRQCNAPTPTHNGKNCSELGATFETQPCQGPVQCPIDGHWSDFGPWSACSLSCGFGGTQTRQRTCSNPAPQNDGLICPGEDMETRNCDTETSCCTRPYTA----VGCFNDSATDHALPELLFDDTENID 1963
+ VH +S+WS W C++TCG G+ R R N P + GG+ C G E +NC N PCP+DG WS W+ + C+ + G G + R R C P Q+GGRPC G A + C I P PV ++ W WG C ++CG+G Q R R +P +GG C+G +++Q C+ CP+ G + W+ WS CS +CGGG++ R R C++P P GG C G + CN CP G S W+ W TC TC G+ +RYR C+ P P++ G+ C G + Q C + CP+DG W + WS CS SCG GG +TR+R C +P P G CPG+ + C+ + +C P A +G ND A D+ N D
Sbjct: 4525 IVQVHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC----EGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG--GPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQ-ACPGGPQRARGSVIGNINDVEFGIAFLNATITDSPNSD 4904 HSP 2 Score: 209.534 bits (532), Expect = 7.045e-54 Identity = 145/375 (38.67%), Postives = 201/375 (53.60%), Query Frame = 2
Query: 2111 VSNNCVTVGGVPKED--KFVACDGNNSGKPCSGGNNTNFVYVLEERPRDGNFSQWSSWSNCSVTCGTGSRTRYRTCTNPSPAFGGKTCEELNLGNKEEVTSCTLQSCPVDCAFTDWSDWSVCSVTCGSGTKDRQRTPTNPPASNGGKNCSRDALQTVPCELPLCPVDGGYXXXXXXXXXXXTCGPASRTRLRYXXXXXXXXXXXXXXXXXQDVDSQNLGECKEDGNWGEWSPWSLCSKTCGRGNANRTRECNNPSPKSGGQVCIGANEECKICNIVDCPVNGNYTEWTSWTQCDHTCGNGTKTRSRSCSSPPPIGDGKTCLQQNLGPADEMQPCNLGPCPENVTSTQTEGWASWNEWSQCSVTCGDGITTRERNC 3229
+SNN + + KED +F N G + V V G FSQWS+W CSVTCG G + R R C P PA GGK C+ G+ E+ +C + CPVD ++++WS W C+ +CG G + R RT NP +GG+ C +A++ + C + CPV G +S W W S +CG ++TR R CNNP P+ GG+ C G+ + N C G W W+ WS CS +CG G RTR C++P P+ GG+ C G++ + CN CP +GN++ W+ W C TC G R R+C +PPP G+ C GP ++Q CN CP + W SW+ WSQCS +CG G TR+R C
Sbjct: 4489 LSNNSLYIADAQKEDTSEFECVARNLMG--------SVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ----GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC----GGPDSQIQRCNTDMCPVD------GSWGSWHSWSQCSASCGGGEKTRKRLC 4841 HSP 3 Score: 202.986 bits (515), Expect = 6.823e-52 Identity = 121/306 (39.54%), Postives = 161/306 (52.61%), Query Frame = 2
Query: 2765 CKEDGNWGEWSPWSLCSKTCGRGNANRTRECNNPSPKSGGQVCIGANEECKICNIVDCPVNGNYTEWTSWTQCDHTCGNGTKTRSRSCSSPPPIGDGKTCLQQNLGPADEMQPCNLGPCPENVTSTQTEGWASWNEWSQCSVTCGDGITTRERNCSSSAGCPLNENPGTF-ATTEKSAEVCRMPPCSVLEPDMEPLFPWGSWSACSSTCGVGEKHRSRNCTQANSQN--LVCPCPKMESIKCDQGPCPIDGSWGQWTAFTDCSTTCGSGTISRQRQCDSPSPKNGGKNCAGKSTENRNCNCFRECP 3673
C DG+W EWS W C+++CGRGN RTR CNNPS + GG+ C G E +CNI CPV+G ++ W W C +CG GT+TR+R C++PPP G C G +MQ CN CP + WA+W WS CSV+CG G R R CS P+ + G ++ ++ C PC P PW W CS TC G+ R R C N C P + +C+ CP+DGSWG W +++ CS +CG G +R+R CD P P GG+ C G +T+ CN + CP
Sbjct: 4583 CPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC----DGAETQMQVCNERNCPIH------GKWATWASWSACSVSCGGGARQRTRGCSD----PVPQYGGRKCEGSDVQSDFCNSDPC----PTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNV-QACP 4869 HSP 4 Score: 187.963 bits (476), Expect = 2.160e-47 Identity = 124/373 (33.24%), Postives = 173/373 (46.38%), Query Frame = 2
Query: 2930 VDCPVNGNYTEWTSWTQCDHTCGNGTKTRSRSCSSPPPIGDGKTCLQQNLGPADEMQPCNLGPCPENVTSTQTEGWASWNEWSQCSVTCGDGITTRERNCSS----SAGCPLNENPGTFATTEKSAEVCRMPPCSVLEPDMEPLFPWGSWSACSSTCGVGEKHRSRNCTQANSQ--NLVCPCPKMESIKCDQGPCPIDGSWGQWTAFTDCSTTCGSGTISRQRQCDSPSPKNGGKNCAGKSTENRNCNCFRECPVNGNFTDWSPWSLCDKTCGPGNRARSRSCTNPSPKFGGAPCQGNTTDLQECKVMDCPVDCLLDEWSAWSQCSVDCYYGKQIRERKIIQEAAFNGTQ-CAGDRNQTRNCYIECCKTDYQR 4027
V V+G +++W++W C TCG G + RSR C+ P P GK C +L EM+ C PCP + W+ W+ W +C+ +CG G TR R C++ G P N +C + PC P W W CS +CG G + R+R C C + + C++ CPI G W W +++ CS +CG G R R C P P+ GG+ C G ++ CN CP +GN++ WS W C +TC G R R+C NP P GG C G + +Q C CPVD W +WSQCS C G++ R+R G + C GD Q C ++ C QR
Sbjct: 4524 VIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL----EMRNCQNKPCPVD------GSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEII-------MCNIRPC----PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGPQR 4874 HSP 5 Score: 181.8 bits (460), Expect = 1.629e-45 Identity = 101/256 (39.45%), Postives = 131/256 (51.17%), Query Frame = 2
Query: 4328 QKCKNLDIHCTGLDVKTGFLYGLNDVQPVPCGYTDWSGWTTCSKSCGAGSQERSREDNNPPAAFGGAVCNETLFENRTCSLQPCPIPGNWGPWTAYTTCSVSCGEGVMNRTRECNNPSPAYGGAPCPGNDTEMQKCQEGPCPIDGNWSEWTAWTGCSVSCGYGSRDRERQCNNPEPQNGGKSCEGESKQNIDCILQNCTYPP--SEWGPWGPCLPACGPGVRQRSRDCPK-------SPCHGDLVETEECENRPCP 5068
QK + C ++ L + + V G++ WS W CS +CG G Q+RSR N P A GG C + E R C +PCP+ G+W W+ + C+ SCG G RTR CNNPS +GG PC GN E+ C PCP+ G WS W W CS SCG G++ R R CNNP P GG C+G Q C +NC + W W C +CG G RQR+R C C G V+++ C + PCP
Sbjct: 4500 QKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 6 Score: 176.022 bits (445), Expect = 1.055e-43 Identity = 96/230 (41.74%), Postives = 125/230 (54.35%), Query Frame = 2
Query: 4409 PVPCGYTDWSGWTTCSKSCGAGSQERSREDNNPPAAFGGAVCNETLFENRTCSLQPCPIPGNWGPWTAYTTCSVSCGEGVMNRTRECNNPSPAYGGAPCPGNDTEMQKCQEGPCPIDGNWSEWTAWTGCSVSCGYGSRDRERQCNNPEPQNGGKSCEGESKQNIDCILQNCTYPP--SEWGPWGPCLPACGPGVRQRSRDCPKSP-------CHGDLVETEECENRPCPI 5071
PV +++WS W C++SCG G+Q R+R NNP GG C E C+++PCP+ G W W + TCS SCG+G R R CNNP PA+GG+ C G +T+MQ C E CPI G W+ W +W+ CSVSCG G+R R R C++P PQ GG+ CEG Q+ C C S W WG C C G +R R C P C G + + C CP+
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPV 4813 HSP 7 Score: 172.17 bits (435), Expect = 1.424e-42 Identity = 94/229 (41.05%), Postives = 121/229 (52.84%), Query Frame = 2
Query: 4409 PVPCGYTDWSGWTTCSKSCGAGSQERSREDNNPPAAFGGAVCNETLFENRTCSLQPCPIPGNWGPWTAYTTCSVSCGEGVMNRTRECNNPSPAYGGAPCPGNDTEMQKCQEGPCPIDGNWSEWTAWTGCSVSCGYGSRDRERQCNNPEPQNGGKSCEGESKQNIDCILQNCTYPPS--EWGPWGPCLPACGPGVRQRSRDCPK-------SPCHGDLVETEECENRPCP 5068
PV ++ W W TCS+SCG G+Q R+R NNPP AFGG+ C+ + + C+ + CPI G W W +++ CSVSCG G RTR C++P P YGG C G+D + C PCP GNWS W+ W CS +C G R R C+NP P NGG++C G Q C C S W W C +CG G + R R C PC GD + C + CP
Sbjct: 4641 PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 8 Score: 127.872 bits (320), Expect = 4.103e-29 Identity = 95/254 (37.40%), Postives = 130/254 (51.18%), Query Frame = 2
Query: 2180 NSGKPCSGGNNTNFVYVLEERPRDGNFSQWSSWSNCSVTCGTGSRTRYRTCTNPSPAFGGKTCEELNLGNKEEVTSCTLQSCPVDCAFTDWSDWSVCSVTCGSGTKDRQRTPTNPPASNGGKNCSRDALQTVPCELPLCPVDGGYXXXXXXXXXXXTCGPASRTRLRYXXXXXXXXXXXXXXXXXQDVDSQNLGECKEDGNWGEWSPWSLCSKTCGRGNANRTRECNNPSPKSGGQVCIGANEECKICNIVDCP 2941
+ G+PC G + + P G +S W W CS +CG G++TR R C NP PAFGG C+ G + ++ C ++CP+ + W+ WS CSV+CG G + R R ++P GG+ C +Q+ C CP G +S WS W S TC R R C+NP PS+GG C G + N C DG+WG W WS CS +CG G R R C++P P GG+ C G + CN+ CP
Sbjct: 4620 HGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD----GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 9 Score: 116.316 bits (290), Expect = 1.324e-25 Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 2
Query: 11 ISVDGNYTEWSSWGVCSTTCGNGTRVRSRMCSNPKPMYGGKDCQHYGEPEEIGACPDQKPCPINGTWTPWSPWSNCSRPCGEGVRTRVRQCIEP--QYGGYPCEGVAVENIFCKMRDC 358
+ V G +++WS+W CS TCG G + RSR+C+ P P GGK CQ G E+ C KPCP++G+W+ WS W C+R CG G +TR R C P Q+GG PCEG AVE I C +R C
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNC-QNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 10 Score: 99.3673 bits (246), Expect = 1.607e-20 Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 2
Query: 17 VDGNYTEWSSWGVCSTTCGNGTRVRSRMCSNPKPMYGGKDCQHYGEPEEIGACPDQKPCPINGTWTPWSPWSNCSRPCGEGVRTRVRQCIE--PQYGGYPCEGVAVENIFCKMRDC 358
V G ++ W WG CS +CG GT+ R+R+C+NP P +GG C G ++ C +++ CPI+G W W+ WS CS CG G R R R C + PQYGG CEG V++ FC C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVC-NERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 11 Score: 98.5969 bits (244), Expect = 2.706e-20 Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 2
Query: 1499 PTCCPVDGGLSEWTSWSTCDVTCGSGERQRYRQCNAPTPTHNGKNCSELGATFETQPCQGPVQCPIDGHWSDFGPWSACSLSCGFGGTQTRQRTCSNPAPQNDGLICPGEDMETRNCDT 1855
P V GG S+W++W C VTCG G ++R R CN P P + GK C G+ E + CQ CP+DG WS++ W C+ SCG G QTR RTC+NP+ Q+ G C G +E C+
Sbjct: 4523 PVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCG-RGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI 4637 HSP 12 Score: 97.8265 bits (242), Expect = 4.792e-20 Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 2
Query: 17 VDGNYTEWSSWGVCSTTCGNGTRVRSRMCSNPKPMYGGKDCQHYGEPEEIGACPDQKPCPINGTWTPWSPWSNCSRPCGEGVRTRVRQCIE--PQYGGYPCEGVAVENIFCKMRDC 358
VDG+++EWS W C+ +CG G + R+R C+NP +GG+ C+ G EI C + +PCP++G W+ W PW CS CG+G +TR R C P +GG C+G + C R+C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMC-NIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 13 Score: 95.9005 bits (237), Expect = 2.156e-19 Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = 2
Query: 4355 CTGLDVKTGFLYGLNDVQPVPCGYTDWSGWTTCSKSCGAGSQERSREDNNPPAAFGGAVCNETLFENRTCSLQPCPIPGNWGPWTAYTTCSVSCGEGVMNRTRECNNPSPAYGGAPCPGNDTEMQKCQEGPCP 4753
C G DV++ F +D P ++ WSGW TCS++C G R R +NPP + GG C + + C+ CP+ G+WG W +++ CS SCG G R R C++P P GG PCPG+ T++ +C CP
Sbjct: 4739 CEGSDVQSDFCN--SDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00050253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.