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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050261 ID=TCONS_00050261|Name=TCONS_00050261|organism=Clytia hemisphaerica|type=transcript|length=1646bpRun BLAST on NCBI protein sequence of TCONS_00050261-protein >TCONS_00050261-protein ID=TCONS_00050261-protein|Name=TCONS_00050261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp MATAQDTREAYIKVCMEKGVDINNEVMFLINRMEELNEHGEPSPHIMRLHRun BLAST on NCBI transcript from alignment at scaffold_168:272391..284087- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050261 ID=TCONS_00050261|Name=TCONS_00050261|organism=Clytia hemisphaerica|type=transcript|length=11697bp|location=Sequence derived from alignment at scaffold_168:272391..284087- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_168:272391..284087- >TCONS_00050261 ID=TCONS_00050261|Name=TCONS_00050261|organism=Clytia hemisphaerica|type=CDS|length=13002bp|location=Sequence derived from alignment at scaffold_168:272391..284087- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050261 vs. Swiss-Prot (Human)
Match: LRC34 (Leucine-rich repeat-containing protein 34 OS=Homo sapiens GN=LRRC34 PE=2 SV=2) HSP 1 Score: 214.542 bits (545), Expect = 1.048e-62 Identity = 126/383 (32.90%), Postives = 212/383 (55.35%), Query Frame = 1
Query: 70 REAYIKVCMEKGVDINNEVMFLINRMEELNEHGEPSPHIMRLHGNKRNDQNEMYRRRIDDNELEIFTLLFTGNTYLVGIDLGYNLITDEGAKLIGKLLEETPSLETLILSYNDIGVSGATVIAKGIQMNETLTCLKMDGNKFGRVGGLAIAGALQVNTTLEELDITNTEQDTQSLIALATVLKSNCHLKKLVIGRPLLHSKQEDTTIHFARLLEVNRSIKEIHLRNHGMVNFGVEQIVNHIMDNMTLLHLDVSCNQLSRDGMESIAKYLKSNPPLRILNVGYNRAEDDGAIVLSNALSHGNINLETLVIRNNSLTGKGLCALAKSLTLNTTLTQLYVWGNELDTPACQAFRGLLTGVIPRLAPNDTDIKSYVVDGVPRLAQVA 1218
++ Y +CMEK IN ++ ++ ++E + G + + + GN R E R+ + I + + Y+ G+D+GYNL+ D GA KLL++ +L L L +NDIG G +IAK + N TL L+M GNK GG+ A LQ+N++LE+LD+ +C L E++T+H R+L+ N + +H+ H + N G++Q+ + + N +L +LDVSCN+++ DGM +A LKSN L ++++ +NR E+ GA LS L+ N +L+ L + +N++ G+GL AL++S+ N T + +Y+WGN+ D C A+ L+ + L P++TD++ +VVDG LA+V+
Sbjct: 41 QKHYSNLCMEKSQKINPFILHILQEVDEEIKKGLAAGITLNIAGNNRLVPVE----RVTGEDFWILSKILKNCLYINGLDVGYNLLCDVGAYYAAKLLQKQLNLIYLNLMFNDIGPEGGELIAKVLHKNRTLKYLRMTGNKIENKGGMFFAAMLQINSSLEKLDL------------------GDCDL--------------EESTVHVGRMLKENHCLVALHMCKHDIKNSGIQQLCDALYLNSSLRYLDVSCNKITHDGMVYLADVLKSNTTLEVIDLSFNRIENAGANYLSETLTSHNRSLKALSVVSNNIEGEGLVALSQSMKTNLTFSHIYIWGNKFDEATCIAYSDLIQ--MGCLKPDNTDVEPFVVDGRVYLAEVS 385 The following BLAST results are available for this feature:
BLAST of TCONS_00050261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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