TCONS_00050292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050292
Unique NameTCONS_00050292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050292 ID=TCONS_00050292|Name=TCONS_00050292|organism=Clytia hemisphaerica|type=transcript|length=298bp
CTATCAAGCCTTAAACTATTTCTTTGAttatttatcaaatataaagAGAA
TAGCCTTATATTTTGTAATTATAAATGCACATTATTGTGGCTTACAGATC
CAAAAACATGACTGTAAAGCATTTATCAAACAATGTGATTCAAATCGATA
TTTCAGTGGTGGTTTATGAAGCTAGAACAGTACCTAGTGTAACTTAATTT
TGTCTGTCAGCCACAAAAATTGCTCATCTAACCATGAAAAGACTACTATT
GAtggtttcctttcaaatttgatataaaataCCAACCCTGCATTCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_168:305184..305481

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050292 ID=TCONS_00050292|Name=TCONS_00050292|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at scaffold_168:305184..305481 (Clytia hemisphaerica)
TAAGAATGCAGGGTTGGtattttatatcaaatttgaaaggaaaccaTCAA
TAGTAGTCTTTTCATGGTTAGATGAGCAATTTTTGTGGCTGACAGACAAA
ATTAAGTTACACTAGGTACTGTTCTAGCTTCATAAACCACCACTGAAATA
TCGATTTGAATCACATTGTTTGATAAATGCTTTACAGTCATGTTTTTGGA
TCTGTAAGCCACAATAATGTGCATTTATAATTACAAAATATAAGGCTATT
CTctttatatttgataaataaTCAAAGAAATAGTTTAAGGCTTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031849XLOC_031849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050292-exon-scaffold_168-1491911889:305184..305481TCONS_00050292-exon-scaffold_168-1491911889:305184..305481Clytia hemisphaericaexon
TCONS_00050292-exon-scaffold_168-1510915933:305184..305481TCONS_00050292-exon-scaffold_168-1510915933:305184..305481Clytia hemisphaericaexon
TCONS_00050292-exon-scaffold_168-1575043694:305184..305481TCONS_00050292-exon-scaffold_168-1575043694:305184..305481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:305184..305481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.58142	2.3283	3.15394	4.40806	1.60992	1.69624	2.55805	1.91585	0	0.415364	3.2253	0.795069	0.264655	0.549693	2.25961	0.484982	0.298729	0.612375	0	0	3.07797	1.126	0.91253	1.65925	0	0.381307	3.27389	2.32932	1.76671	1.35
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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