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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050228 ID=TCONS_00050228|Name=TCONS_00050228|organism=Clytia hemisphaerica|type=transcript|length=967bp
ATTTTGTAGATATGTCGGAGgaataaaaactttttggaaCTGAGACTGGC
ACGATGAAGGGGCTgggtattttattgtttttggtGACATATCGAGTTCA
AGGTCGACCCACCAAATCACACAACCACTTTCATAATAAGAACCACAAGA
AATATGTGATTGAAGTGCAAGATCACCAACAGGCTATGAAGTACGCCGAT
CCATTGAGCGATCTAGAGGAGACCGTGCGGCGTGGTTTCAACGACCCGTA
TAACGACCGTAACTTCTTCATGAACAATGTCAatgaagaattctttcaaa
atggcggatcaAGCAACATACATAAAACACCCGAACGCGCTTTCAACCCG
AACACCTTATCACGTCAACAAATTCAAAGCACTTCACATGTTTTCAACTT
GACACCTCAACGCATTATAAACGAGAATTCATTCAAATCAAACAATATTA
TACAGCGTCCAAGGCCGATGGTTGCGCGCCAAGAGAACGCACGTAAAAAC
ACAGGGATACCAAGAGCACAAAACACAATTTTGAGCTTATTAAACGAATA
CAAATTACACAATCTACAATCTCGTCCTGTGAAGACGTTCATTCGCCAAC
CACAACCGAATGTGGGGCATGTCAACCCGCTAACAGGGCTACCGGAGAAT
CTGGAGGATAAAGCGTACGGTGCGGTAACTTCCATTGAGTCCGTTGGAGA
CGACGTTCCTAAGCAACCATCATCTGTTGTCATCGATCTCAACGCTGCTC
GCCGAAGACAAAGCATcaataacaaacaaaaactttctcCGAGACATTTC
GGTGCTAAGCCATCACCCAAAACGAACAATTTAAGTTTGATGGCGGGTAC
TTTAGGAAGTAATTTTGACCAGATCCAGTCGTTCTTACAAGCAGATGATA
TCCTTAGGAAAAAATTCGACAACAGTAACCTGGGTCCGCTGTAATAAAAA
ACATCCATCAATTTTTA Run BLAST on NCBI protein sequence of TCONS_00050228-protein >TCONS_00050228-protein ID=TCONS_00050228-protein|Name=TCONS_00050228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MKGLGILLFLVTYRVQGRPTKSHNHFHNKNHKKYVIEVQDHQQAMKYADP
LSDLEETVRRGFNDPYNDRNFFMNNVNEEFFQNGGSSNIHKTPERAFNPN
TLSRQQIQSTSHVFNLTPQRIINENSFKSNNIIQRPRPMVARQENARKNT
GIPRAQNTILSLLNEYKLHNLQSRPVKTFIRQPQPNVGHVNPLTGLPENL
EDKAYGAVTSIESVGDDVPKQPSSVVIDLNAARRRQSINNKQKLSPRHFG
AKPSPKTNNLSLMAGTLGSNFDQIQSFLQADDILRKKFDNSNLGPL Run BLAST on NCBI transcript from alignment at scaffold_168:333645..335158+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050228 ID=TCONS_00050228|Name=TCONS_00050228|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at scaffold_168:333645..335158+ (Clytia hemisphaerica)
ATTTTGTAGATATGTCGGAGgaataaaaactttttggaaCTGAGACTGGC
ACGATGAAGGGGCTgggtattttattgtttttggtGACATATCGAGTTCA
AGGTACTCAACATACAAAATCATAATTCtatctattgttttatttattgT
CTTTTTGCCGGAATTTTTCGTTATATACACTGAACAATGTAAGATGGAGA
ATTTTCTCGTTTGCAAATGGTAGAGAATAGGctgagaaaaatgaaagaat
tttctaattttcaactTAATAAatgtccaaaataaccaaaagtcaACCCT
GTCCGATATACATCTTGATAATTAGTAAATATTGGAATCCTGTCAGATAT
TTTCATAGCCTTAAAATAGACCCTGACCAGCGACTCGTCCTCGTatccaa
ttttgcctaagtgaccccccccccccccccttttttcccaaagccccccc
cccccccttttttcccaaagccccccccccccccttttttcccaaagccc
cccccccccccttttttcccaaagccccccccccccccttttttcccaaa
gccccccccccccccatttttacTGACAGTTAATTTGAGCGTCATAAGGC
CTGTAATAAGCTGGAACaaagttattttaattttctCATTTCTGCTCAGG
TCGACCCACCAAATCACACAACCACTTTCATAATAAGAACCACAAGAAAT
ATGTGATTGAAGTGCAAGATCACCAACAGGCTATGAAGTACGCCGATCCA
TTGAGCGATCTAGAGGAGACCGTGCGGCGTGGTTTCAACGACCCGTATAA
CGACCGTAACTTCTTCATGAACAATGTCAatgaagaattctttcaaaatg
gcggatcaAGCAACATACATAAAACACCCGAACGCGCTTTCAACCCGAAC
ACCTTATCACGTCAACAAATTCAAAGCACTTCACATGTTTTCAACTTGAC
ACCTCAACGCATTATAAACGAGAATTCATTCAAATCAAACAATATTATAC
AGCGTCCAAGGCCGATGGTTGCGCGCCAAGAGAACGCACGTAAAAACACA
GGGATACCAAGAGCACAAAACACAATTTTGAGCTTATTAAACGAATACAA
ATTACACAATCTACAATCTCGTCCTGTGAAGACGTTCATTCGCCAACCAC
AACCGAATGTGGGGCATGTCAACCCGCTAACAGGGCTACCGGAGAATCTG
GAGGATAAAGCGTACGGTGCGGTAACTTCCATTGAGTCCGTTGGAGACGA
CGTTCCTAAGCAACCATCATCTGTTGTCATCGATCTCAACGCTGCTCGCC
GAAGACAAAGCATcaataacaaacaaaaactttctcCGAGACATTTCGGT
GCTAAGCCATCACCCAAAACGAACAATTTAAGTTTGATGGCGGGTACTTT
AGGAAGTAATTTTGACCAGATCCAGTCGTTCTTACAAGCAGATGATATCC
TTAGGAAAAAATTCGACAACAGTAACCTGGGTCCGCTGTAATAAAAAACA
TCCATCAATTTTTA Coding sequence (CDS) from alignment at scaffold_168:333645..335158+ >TCONS_00050228 ID=TCONS_00050228|Name=TCONS_00050228|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_168:333645..335158+ (Clytia hemisphaerica)
ATGAAGGGGCTgggtattttattgtttttggtGACATATCGAGTTCAAGG
TCGACCCACCAAATCACACAACCACTTTCATAATAAGAACCACAAGAAAT
ATGTGATTGAAGTGCAAGATCACCAACAGGCTATGAAGTACGCCGATCCA
TTGAGCGATCTAGAGGAGACCGTGCGGCGTGGTTTCAACGACCCGTATAA
CGACCGTAACTTCTTCATGAACAATGTCAatgaagaattctttcaaaatg
gcggatcaAGCAACATACATAAAACACCCGAACGCGCTTTCAACCCGAAC
ACCTTATCACGTCAACAAATTCAAAGCACTTCACATGTTTTCAACTTGAC
ACCTCAACGCATTATAAACGAGAATTCATTCAAATCAAACAATATTATAC
AGCGTCCAAGGCCGATGGTTGCGCGCCAAGAGAACGCACGTAAAAACACA
GGGATACCAAGAGCACAAAACACAATTTTGAGCTTATTAAACGAATACAA
ATTACACAATCTACAATCTCGTCCTGTGAAGACGTTCATTCGCCAACCAC
AACCGAATGTGGGGCATGTCAACCCGCTAACAGGGCTACCGGAGAATCTG
GAGGATAAAGCGTACGGTGCGGTAACTTCCATTGAGTCCGTTGGAGACGA
CGTTCCTAAGCAACCATCATCTGTTGTCATCGATCTCAACGCTGCTCGCC
GAAGACAAAGCATcaataacaaacaaaaactttctcCGAGACATTTCGGT
GCTAAGCCATCACCCAAAACGAACAATTTAAGTTTGATGGCGGGTACTTT
AGGAAGTAATTTTGACCAGATCCAGTCGTTCTTACAAGCAGATGATATCC
TTAGGAAAAAATTCGACAACAGTAACCTGGGTCCGCTGTAAATGAAGGGG
CTgggtattttattgtttttggtGACATATCGAGTTCAAGGTCGACCCAC
CAAATCACACAACCACTTTCATAATAAGAACCACAAGAAATATGTGATTG
AAGTGCAAGATCACCAACAGGCTATGAAGTACGCCGATCCATTGAGCGAT
CTAGAGGAGACCGTGCGGCGTGGTTTCAACGACCCGTATAACGACCGTAA
CTTCTTCATGAACAATGTCAatgaagaattctttcaaaatggcggatcaA
GCAACATACATAAAACACCCGAACGCGCTTTCAACCCGAACACCTTATCA
CGTCAACAAATTCAAAGCACTTCACATGTTTTCAACTTGACACCTCAACG
CATTATAAACGAGAATTCATTCAAATCAAACAATATTATACAGCGTCCAA
GGCCGATGGTTGCGCGCCAAGAGAACGCACGTAAAAACACAGGGATACCA
AGAGCACAAAACACAATTTTGAGCTTATTAAACGAATACAAATTACACAA
TCTACAATCTCGTCCTGTGAAGACGTTCATTCGCCAACCACAACCGAATG
TGGGGCATGTCAACCCGCTAACAGGGCTACCGGAGAATCTGGAGGATAAA
GCGTACGGTGCGGTAACTTCCATTGAGTCCGTTGGAGACGACGTTCCTAA
GCAACCATCATCTGTTGTCATCGATCTCAACGCTGCTCGCCGAAGACAAA
GCATcaataacaaacaaaaactttctcCGAGACATTTCGGTGCTAAGCCA
TCACCCAAAACGAACAATTTAAGTTTGATGGCGGGTACTTTAGGAAGTAA
TTTTGACCAGATCCAGTCGTTCTTACAAGCAGATGATATCCTTAGGAAAA
AATTCGACAACAGTAACCTGGGTCCGCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050228-exon-scaffold_168-1491911889:333645..333746 | TCONS_00050228-exon-scaffold_168-1491911889:333645..333746 | Clytia hemisphaerica | exon |
| TCONS_00050228-exon-scaffold_168-1510915933:333645..333746 | TCONS_00050228-exon-scaffold_168-1510915933:333645..333746 | Clytia hemisphaerica | exon |
| TCONS_00050228-exon-scaffold_168-1575043694:333645..333746 | TCONS_00050228-exon-scaffold_168-1575043694:333645..333746 | Clytia hemisphaerica | exon |
| TCONS_00050228-exon-scaffold_168-1491911889:334294..335158 | TCONS_00050228-exon-scaffold_168-1491911889:334294..335158 | Clytia hemisphaerica | exon |
| TCONS_00050228-exon-scaffold_168-1510915933:334294..335158 | TCONS_00050228-exon-scaffold_168-1510915933:334294..335158 | Clytia hemisphaerica | exon |
| TCONS_00050228-exon-scaffold_168-1575043694:334294..335158 | TCONS_00050228-exon-scaffold_168-1575043694:334294..335158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:333645..335158 + |
Blast
The following BLAST results are available for this feature:
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