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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050293 ID=TCONS_00050293|Name=TCONS_00050293|organism=Clytia hemisphaerica|type=transcript|length=1352bp
gtgaaatctttttcagtacgcgaataactttttacaaaaaagacctgaat
ttatcaaaaagtaagtTTTGGTCCATAGTGTAGGCTGCCATTATTGAGTC
AACTGTCACTCCTGACTTAGcgattttcgaattttccttCGGGGGTGCGA
TCAAGTAGGTATTGGAATGACATGAAGTTTTTCGAGAACGAATCTATGAT
ATTTTTCTCAACACAAATAAAAGTGTCCCCAAAGAATATAAAGTATATAA
AGAGAATGGATAGGTATATAGATTCCTATTATTATGATTTTAAGTTTCCA
AGAACTCCTTGAAATAAATGAAGTTCTTGTAAAtaagattcgaacaaaaa
ctcCACAAGTCGAATTATGTTACTGTTCTGTTAATGTTCTTATGAATTAC
TGAATTATTTTCGGCATACGTCGTGAGGCCAACCATCCTTGCAACCTTGG
GAGCTTTTGATCACTCCATGACTTCCTCTGGTATCACTGCAGACAGGGTC
TGGGATTCCATCACCATCACAATCCTTGAAGACAAATGTTGATCCTGCGT
GACTGCACCATCCTTTTGGTCGAGCACAGACTTTGCCTTTCATGGTTGCA
CAGGAAGCTTTGGGCCAAACTGAATGACATCCCTTCGAACTTTGGATAAT
ACCAAGATTACCATTGGTATCTGAACACACAGGATCAGGGATGCCGTCAC
GATCACAATCCATCATTGTGTAGACAGACCCACTGTGGCTGCACCAACCA
TTGGCTCTCTTGCAAGTATGTCTAGCCGCTCCTTTGGCTTTACAGACGGC
GTGTGGCCATGTCGATTTACATTGTTGAGAGCTTTTGATGATGCCCAAAC
TACCACGCGTATCAGAACAGACCGGGTCAGGGATTCCATCATTGTCACAA
TCTTGGTAGAAAAAAGTGGCTCCACTGTGACTGCACCATCGCTTATGCCG
ATCACAGACGCGCCCTTTCTGGTTGTTACACTTCCCTGTCGGCCACTTGC
TTCTGCATCCTTTTGTCAATCCGATGACACCGAAAGCACCATTGTGGTCT
GAGCATATTGGATCAAGGAGGCCATCTCCGTCGCAATCCAAGAAGGTGAA
GGTGGAACCACTGTGGCTACACCACCCAGGCTGTCTCCAACAAGACGTTT
TGTGTGGCGATGCACTTGATGTTTTATACATCAAAAGCAAAGTAAAACAG
ATTTGAATCCACATGTTGAAGTAGTTTTCCGTATGACTTGCTCTAATGCT
TGCATTTACAAGAAGAATGTTCTTCATATATTTTTACGCTATAAATACGG
TACCGATAACATCACCATGGTTCTGGTTtgcaaaacaaataaaagaaccG
CC Run BLAST on NCBI protein sequence of TCONS_00050293-protein >TCONS_00050293-protein ID=TCONS_00050293-protein|Name=TCONS_00050293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MKNILLVNASIRASHTENYFNMWIQICFTLLLMYKTSSASPHKTSCWRQP
GWCSHSGSTFTFLDCDGDGLLDPICSDHNGAFGVIGLTKGCRSKWPTGKC
NNQKGRVCDRHKRWCSHSGATFFYQDCDNDGIPDPVCSDTRGSLGIIKSS
QQCKSTWPHAVCKAKGAARHTCKRANGWCSHSGSVYTMMDCDRDGIPDPV
CSDTNGNLGIIQSSKGCHSVWPKASCATMKGKVCARPKGWCSHAGSTFVF
KDCDGDGIPDPVCSDTRGSHGVIKSSQGCKDGWPHDVCRK Run BLAST on NCBI transcript from alignment at scaffold_168:355901..357252 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050293 ID=TCONS_00050293|Name=TCONS_00050293|organism=Clytia hemisphaerica|type=transcript|length=1352bp|location=Sequence derived from alignment at scaffold_168:355901..357252 (Clytia hemisphaerica)
GGCggttcttttatttgttttgcaAACCAGAACCATGGTGATGTTATCGG
TACCGTATTTATAGCGTAAAAATATATGAAGAACATTCTTCTTGTAAATG
CAAGCATTAGAGCAAGTCATACGGAAAACTACTTCAACATGTGGATTCAA
ATCTGTTTTACTTTGCTTTTGATGTATAAAACATCAAGTGCATCGCCACA
CAAAACGTCTTGTTGGAGACAGCCTGGGTGGTGTAGCCACAGTGGTTCCA
CCTTCACCTTCTTGGATTGCGACGGAGATGGCCTCCTTGATCCAATATGC
TCAGACCACAATGGTGCTTTCGGTGTCATCGGATTGACAAAAGGATGCAG
AAGCAAGTGGCCGACAGGGAAGTGTAACAACCAGAAAGGGCGCGTCTGTG
ATCGGCATAAGCGATGGTGCAGTCACAGTGGAGCCACTTTTTTCTACCAA
GATTGTGACAATGATGGAATCCCTGACCCGGTCTGTTCTGATACGCGTGG
TAGTTTGGGCATCATCAAAAGCTCTCAACAATGTAAATCGACATGGCCAC
ACGCCGTCTGTAAAGCCAAAGGAGCGGCTAGACATACTTGCAAGAGAGCC
AATGGTTGGTGCAGCCACAGTGGGTCTGTCTACACAATGATGGATTGTGA
TCGTGACGGCATCCCTGATCCTGTGTGTTCAGATACCAATGGTAATCTTG
GTATTATCCAAAGTTCGAAGGGATGTCATTCAGTTTGGCCCAAAGCTTCC
TGTGCAACCATGAAAGGCAAAGTCTGTGCTCGACCAAAAGGATGGTGCAG
TCACGCAGGATCAACATTTGTCTTCAAGGATTGTGATGGTGATGGAATCC
CAGACCCTGTCTGCAGTGATACCAGAGGAAGTCATGGAGTGATCAAAAGC
TCCCAAGGTTGCAAGGATGGTTGGCCTCACGACGTATGCCGAAAATAATT
CAGTAATTCATAAGAACATTAACAGAACAGTAACATAATTCGACTTGTGg
agtttttgttcgaatcttaTTTACAAGAACTTCATTTATTTCAAGGAGTT
CTTGGAAACTTAAAATCATAATAATAGGAATCTATATACCTATCCATTCT
CTTTATATACTTTATATTCTTTGGGGACACTTTTATTTGTGTTGAGAAAA
ATATCATAGATTCGTTCTCGAAAAACTTCATGTCATTCCAATACCTACTT
GATCGCACCCCCGaaggaaaattcgaaaatcgCTAAGTCAGGAGTGACAG
TTGACTCAATAATGGCAGCCTACACTATGGACCAAAacttactttttgat
aaattcaggtcttttttgtaaaaagttattcgcgtactgaaaaagatttc
ac Coding sequence (CDS) from alignment at scaffold_168:355901..357252 >TCONS_00050293 ID=TCONS_00050293|Name=TCONS_00050293|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_168:355901..357252 (Clytia hemisphaerica)
ATGAAGAACATTCTTCTTGTAAATGCAAGCATTAGAGCAAGTCATACGGA
AAACTACTTCAACATGTGGATTCAAATCTGTTTTACTTTGCTTTTGATGT
ATAAAACATCAAGTGCATCGCCACACAAAACGTCTTGTTGGAGACAGCCT
GGGTGGTGTAGCCACAGTGGTTCCACCTTCACCTTCTTGGATTGCGACGG
AGATGGCCTCCTTGATCCAATATGCTCAGACCACAATGGTGCTTTCGGTG
TCATCGGATTGACAAAAGGATGCAGAAGCAAGTGGCCGACAGGGAAGTGT
AACAACCAGAAAGGGCGCGTCTGTGATCGGCATAAGCGATGGTGCAGTCA
CAGTGGAGCCACTTTTTTCTACCAAGATTGTGACAATGATGGAATCCCTG
ACCCGGTCTGTTCTGATACGCGTGGTAGTTTGGGCATCATCAAAAGCTCT
CAACAATGTAAATCGACATGGCCACACGCCGTCTGTAAAGCCAAAGGAGC
GGCTAGACATACTTGCAAGAGAGCCAATGGTTGGTGCAGCCACAGTGGGT
CTGTCTACACAATGATGGATTGTGATCGTGACGGCATCCCTGATCCTGTG
TGTTCAGATACCAATGGTAATCTTGGTATTATCCAAAGTTCGAAGGGATG
TCATTCAGTTTGGCCCAAAGCTTCCTGTGCAACCATGAAAGGCAAAGTCT
GTGCTCGACCAAAAGGATGGTGCAGTCACGCAGGATCAACATTTGTCTTC
AAGGATTGTGATGGTGATGGAATCCCAGACCCTGTCTGCAGTGATACCAG
AGGAAGTCATGGAGTGATCAAAAGCTCCCAAGGTTGCAAGGATGGTTGGC
CTCACGACGTATGCCGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050293-exon-scaffold_168-1491911889:355901..357252 | TCONS_00050293-exon-scaffold_168-1491911889:355901..357252 | Clytia hemisphaerica | exon |
| TCONS_00050293-exon-scaffold_168-1510915933:355901..357252 | TCONS_00050293-exon-scaffold_168-1510915933:355901..357252 | Clytia hemisphaerica | exon |
| TCONS_00050293-exon-scaffold_168-1575043694:355901..357252 | TCONS_00050293-exon-scaffold_168-1575043694:355901..357252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:355901..357252 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028974 | TSP_type-3_rpt |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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