TCONS_00050353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050353
Unique NameTCONS_00050353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050353 ID=TCONS_00050353|Name=TCONS_00050353|organism=Clytia hemisphaerica|type=transcript|length=372bp
cggcacgaaatttaaaaagtcaaatttttgcttcacttttttttgctgga
gaaagcttaaagttgcctatctagcccttcgggcttagatatctgtgttc
CTTACTCGTCGTTCTTTGCATCAACTATTGCATTGCATAACTAACCtatc
tgtacacagacccgatataTTATACGGATATTTCAAAATTCTATGCCGTA
ATACATACGTTATACTTTATCAACAGAGGAGACAATTTACACATGCACTT
TTAATAATATTTGAATTACACATAGGATTTTACGttatttgtctttgtaa
aaaaCTTCCATTTTCTGATAGCATAGCCAGAGCTGTAAATATtatgtgag
aaaaaaataaccTCTTTCCATT
Run BLAST on NCBI

transcript from alignment at scaffold_169:17732..18103

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050353 ID=TCONS_00050353|Name=TCONS_00050353|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_169:17732..18103 (Clytia hemisphaerica)
AATGGAAAGAggttatttttttctcacataATATTTACAGCTCTGGCTAT
GCTATCAGAAAATGGAAGttttttacaaagacaaataaCGTAAAATCCTA
TGTGTAATTCAAATATTATTAAAAGTGCATGTGTAAATTGTCTCCTCTGT
TGATAAAGTATAACGTATGTATTACGGCATAGAATTTTGAAATATCCGTA
TAAtatatcgggtctgtgtacagataGGTTAGTTATGCAATGCAATAGTT
GATGCAAAGAACGACGAGTAAGgaacacagatatctaagcccgaagggct
agataggcaactttaagctttctccagcaaaaaaaagtgaagcaaaaatt
tgactttttaaatttcgtgccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031880XLOC_031880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050353-exon-scaffold_169-1491911889:17732..18103TCONS_00050353-exon-scaffold_169-1491911889:17732..18103Clytia hemisphaericaexon
TCONS_00050353-exon-scaffold_169-1510915933:17732..18103TCONS_00050353-exon-scaffold_169-1510915933:17732..18103Clytia hemisphaericaexon
TCONS_00050353-exon-scaffold_169-1575043694:17732..18103TCONS_00050353-exon-scaffold_169-1575043694:17732..18103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:17732..18103 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72591	3.02994	5.92686	11.4948	5.93273	0.869992	4.85269	6.03407	4.62383	2.50181	1.46916	2.40703	2.8543	0.551363	0.213553	0	0.295482	0	0.289502	1.16779	1.8868	2.96011	1.62155	1.69893	2.50612	0.494676	5.6628	1.97943	2.04649	2.02523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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