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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050336 ID=TCONS_00050336|Name=TCONS_00050336|organism=Clytia hemisphaerica|type=transcript|length=1708bpRun BLAST on NCBI protein sequence of TCONS_00050336-protein >TCONS_00050336-protein ID=TCONS_00050336-protein|Name=TCONS_00050336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp MARKLSVGAVGGLLGVAASSLLLMKTKNETVWENVTMPLIRLLDAEVAHRRun BLAST on NCBI transcript from alignment at scaffold_169:18193..39205- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050336 ID=TCONS_00050336|Name=TCONS_00050336|organism=Clytia hemisphaerica|type=transcript|length=21013bp|location=Sequence derived from alignment at scaffold_169:18193..39205- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_169:18193..39205- >TCONS_00050336 ID=TCONS_00050336|Name=TCONS_00050336|organism=Clytia hemisphaerica|type=CDS|length=9792bp|location=Sequence derived from alignment at scaffold_169:18193..39205- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050336 vs. Swiss-Prot (Human)
Match: PYRD (Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Homo sapiens GN=DHODH PE=1 SV=3) HSP 1 Score: 397.512 bits (1020), Expect = 6.133e-133 Identity = 198/368 (53.80%), Postives = 266/368 (72.28%), Query Frame = 1
Query: 169 MKTKNETVWENVTMPLIR-LLDAEVAHRLSVRLASRGLVPSFPTSAADKEVLKTKVFGLDFDSPVGLAAGFDKNAECVDGMLKMGFDFVEVGSITPEPQEGNAKPRVFRLVEDEAVINRYGFNSFGMDTAYSNLTKRRNKPGIVS-------INLGKNKTTENAVDDYVKGVLKLGELANILVINVSSPNTPGLRKMQGRQELAELIEKVLEAKKTLS--NNPPLVVKVAPDLTIEDKKDIAAVVTNAKTRVDGLVVTNTTITRPESLQAVDKTQKGGLSGKPLKELSTQCIKDMFDLTEGNIPIIGVGGISTGEDAYEKICSGASLIQLYSSLSTHGPPVVGKIKRELAKLLRDDGFASVADAVGCD 1242
M T +E + MP ++ LLD E AHRL+VR S GL+P D ++L+ +V G F +PVG+AAGFDK+ E VDG+ KMGF FVE+GS+TP+PQEGN +PRVFRL ED+AVINRYGFNS G+ L R+ K ++ +NLGKNKT+ +A +DY +GV LG LA+ LV+NVSSPNT GLR +QG+ EL L+ KVL+ + L + P ++VK+APDLT +DK+DIA+VV +DGL+VTNTT++RP LQ +++ GGLSGKPL++LSTQ I++M+ LT+G +PIIGVGG+S+G+DA EKI +GASL+QLY++L+ GPPVVGK+KREL LL++ GF V DA+G D
Sbjct: 29 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPR--ARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELG--IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGAD 392 The following BLAST results are available for this feature:
BLAST of TCONS_00050336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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