TCONS_00050337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050337
Unique NameTCONS_00050337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050337 ID=TCONS_00050337|Name=TCONS_00050337|organism=Clytia hemisphaerica|type=transcript|length=509bp
AACCTCCAGCGGTTGCCAAGCAAATGTACATTGGTACATCGAAGATAAGA
ACCCATTGAATGTTGGTGGCTTTGGTTTACCTAAGGATCTCAAAAAGCGA
TCACCAAAAACCAAGGACCAAAAGCCAAACAAGAACCGTGCTTTTGGCGG
CCCAAGGAAGGGCAGAAAAGCTGCTTTCAAACCATCACAAGCAGCCACAA
CAAACAAAGGTGGCTTCGGACTTCCTACAgAAATGCGCAAGCGCATGTAG
ACAGGACGTTCAAGCCAAGGGGTAGATGGAGCTCCGTAGCCCGGGAGGGC
AGTCCGTCTAGGAGAGGCTGAAGTCCAAAATGAAACGCAAGGGCGGATGA
AGCTCTTTATAGTCGTGGTGAAGACAACTCATCTAGGAGAGGGAGAACTC
TGAATTCAAACCGTGCAAATGCAATAGGCTATACGAAAAGCAGCCAACAT
AATAACAAATTAAAGTTATCTAAGTCGGTACTATGACATCTCAGCTACCA
AACATACGG
Run BLAST on NCBI

transcript from alignment at scaffold_169:138771..140312-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050337 ID=TCONS_00050337|Name=TCONS_00050337|organism=Clytia hemisphaerica|type=transcript|length=1542bp|location=Sequence derived from alignment at scaffold_169:138771..140312- (Clytia hemisphaerica)
AACCTCCAGCGGTTGCCAAGCAAATGTACATTGGTACATCGAAGATAAGA
ACCCATTGAATGTTGGTGGCTTTGGTTTACCTAAGGTATTTCTGATTTCC
AACATAAAATTGTCTAGAGACTACCTATAACGGGGGGGGGGCTATTACTG
TGCTTTCTGATAATTTCTGATGATGCCTCAGTTGGGGTAGCTTTGCTTTT
TCCGACACCAAAGGAATTAAAGGTTCCACTTCCAAAATACCGAAAGGATT
TGGTAAGATTAAATTTCGAACAAAAATATTCACAAAATACATTCAAATCA
ATCCCTCTTCAAACAAATCATATTTTCAACTCAAATTGGAATTGAGGAGA
GCTAATCTAATAGGTTGATTTTCTTACTTTTAGGATCTCAAAAAGCGATC
ACCAAAAACCAAGGACCAAAAGCCAAACAAGAACCGTGCTTTTGGCGGCC
CAAGGAAGGGCAGAAAAGCTGCTTTCAAACCATCACAAGCAGCCACAACA
AACAAAGGTGGCTTCGGACTTCCTACAGTAAGTATTTTTGTTTCAGCTTG
TTGACAAGGTTATTTGGTAGCCTAAGTTAGTAAGTCTGCGAAAGCATTCG
GAGGTGACTATCTACCAGAGGGTAGTGGGAGGGCGCCACTCTTTCTCCTC
GGATTAATCCGCTTCACCATGATCCTTCTCTTAATTGCTGAGCATCAAGC
AGGGAGGCATCGAGTATCATTTTGGTAATCTTTGGTATGACCCGACTGGT
TGAGCCCACAACCTTGCGCACCGAAGCCTGATGCTCTATCACTGCACTAC
GGTCGACAGCTATGCTAACGTAGACTTATAATTATCTCTTTGAAACAAAA
AATAGGGTCTGTAAAACATGAATTTAACTTCTTTCATCTAGATTATATAA
TTGATGAAGTAAACACCTTTTCAACTTTCTTTTGAGAAGAAATTCATAGT
CAATGGCAGTTACGCAGTGCTGACGAGCCACAATAAGGACGAAAAAACAT
TGTCATCCATATTCTTCTTAATGAGAAGCTAAAGGGTTAGAAGAAAAGTT
TTTATCGACTCTTGATATGCGTGGGTCACCCGAAAAAGCCGGAACTGGGC
CGCTTTCTGTTACTAAAGATAGAAACTCATTAGTCAACACTCGGCTTTTT
TCGGGTGTTACCGCTAGAAAATACGACATCATCTTGACGTGCGCATATCA
AAGATTGTTTAAAAGATAATTTTATGAAATAAACAATCATCTTTATTTTT
CATTTTATTTAGGAAATGCGCAAGCGCATGTAGACAGGACGTTCAAGCCA
AGGGGTAGATGGAGCTCCGTAGCCCGGGAGGGCAGTCCGTCTAGGAGAGG
CTGAAGTCCAAAATGAAACGCAAGGGCGGATGAAGCTCTTTATAGTCGTG
GTGAAGACAACTCATCTAGGAGAGGGAGAACTCTGAATTCAAACCGTGCA
AATGCAATAGGCTATACGAAAAGCAGCCAACATAATAACAAATTAAAGTT
ATCTAAGTCGGTACTATGACATCTCAGCTACCAAACATACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031869XLOC_031869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050337-exon-scaffold_169-1575043694:140228..140312TCONS_00050337-exon-scaffold_169-1575043694:140228..140312Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1575043694:139786..139929TCONS_00050337-exon-scaffold_169-1575043694:139786..139929Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1575043694:138771..139050TCONS_00050337-exon-scaffold_169-1575043694:138771..139050Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1510915933:140228..140312TCONS_00050337-exon-scaffold_169-1510915933:140228..140312Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1510915933:139786..139929TCONS_00050337-exon-scaffold_169-1510915933:139786..139929Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1510915933:138771..139050TCONS_00050337-exon-scaffold_169-1510915933:138771..139050Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1491911889:140228..140312TCONS_00050337-exon-scaffold_169-1491911889:140228..140312Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1491911889:139786..139929TCONS_00050337-exon-scaffold_169-1491911889:139786..139929Clytia hemisphaericaexon
TCONS_00050337-exon-scaffold_169-1491911889:138771..139050TCONS_00050337-exon-scaffold_169-1491911889:138771..139050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:138771..140312 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.709555	0.290401	0.401697	0.858426	0.797395	1.4734	3.04082	3.70081	2.77928	4.14322	2.27643	2.41132	1.31998	2.18539	0.224913	0.504576	0.710214	0.454966	1.22845	1.05239	0.776669	0.501938	0.271187	0.246549	1.39667	1.24649	0.454107	0	0	0.213482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top