|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050341 ID=TCONS_00050341|Name=TCONS_00050341|organism=Clytia hemisphaerica|type=transcript|length=934bp
TTAATCTTCAACGATCTACAAGTATATAGAGAAACTTGTTATATGGAGCT
CATTGTATATCAAAACTGACACTACGGCAATTTAGAGAGATTTCTTTACA
CCCCTAAATATCACGTGTTATTTAAATTTGTGCTTTATTTTAGTGCTgta
taaaaaacaacaataaaaatggCTAACCGACCAAAAGGATTTGGAATGAC
CGCCGAATTGAATCGAAAAAAGGAAGCCAAATTCGACCCAGACCTGGCAA
ATGATGCTTTTGAATGGTTGAGATTGGTCTTAATAGATGGTGGTCATGAC
GATATGGCTGACGTTCTCAAACATGTTTCAAGCTCTGGGGATGTTGCACC
ACCATTGAAAAACGGAAAAATCCTTTGCACGGTCATCAACTGTATCAAGC
CTGGTACCGTCAGAAAGATCAATGACAGCAAAATGGCATTcaaagaaatg
gaaaatatAAGCAAATTCTTGACTGGTTGTGAGGAATTGGGATGTGACAA
AGGAGATCTTTTCCAAACTGTTGATTTGTACGAATCACAAAATCCGAACC
AGGTCATCAACGGCATAGTCGCTCTGGGTCGCAAATCCCAAACTATTGGC
TACGACGGGCCATGTCTAGGTCCCCAAGAGTCAACAGAAAACAAGCGAGA
ATTCAGTGAGGAACAACTAAAAGCCGGAAAAAACGTCATTGGACTTCAAA
TGGGATCCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACC
CGTGCTATCATTGATTAAATTTTCATgtatattttcttcaattttgggTT
AACTCAGGtccaattcaaaatttaattattgtgaccttttttgttttaat
attaatgtgttttaaaagtagataaaataataaccaaaaaaatgttaatA
GGTATTTATGAGCGGAAAGAACCAAAGAATTGCA Run BLAST on NCBI transcript from alignment at scaffold_169:149921..151470- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050341 ID=TCONS_00050341|Name=TCONS_00050341|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at scaffold_169:149921..151470- (Clytia hemisphaerica)
TTAATCTTCAACGATCTACAAGTATATAGAGAAACTTGTTATATGGAGCT
CATTGTATATCAAAACTGACACTACGGCAATTTAGAGAGATTTCTTTACA
CCCCTAAATATCACGTGTTATTTAAATTTGTGCTTTATTTTAGTGCTGTA
TAAAAAACAACAATAAAAATGGCTAACCGACCAAAAGGATTTGGAATGAC
CGCCGAATTGAATCGAAAAAAGGAAGCCAAATTCGACCCAGACCTGGCAA
ATGATGCTTTTGAATGGTTGAGATTGGTCTTAATAGATGGTGGTCATGAC
GATATGGCTGACGTTCTCAAAGTAAGTTCTCTACAGTGTATGCAAAGAAA
TATTTATATATTACAATATTTTTGCTGTGTCCCGAAAACGGTAAAAAATC
ATTTCTGACTAAAGAAAGACTAAATTTGGAATTTTTTGTTTAGTTGGTAG
ACATCCTGCTCCCAAGATGACACAGCCAACTCTCGAATTGTAGGAAGCAA
TTTACAACGGTTTCCTTTTGACGGGAGCTGCGAATTACAGTAACTCGAAT
TATAGAGAGATTTAGAAAATAAGTCCTCCGTAACAAGTTTCCCTAATCCG
AAAAATCTGTTCCACTTTTTTGTAGGCGTACTGCGTATTTCCAAACTTTA
CTTATTTCTTTATTTAGCCCCTTGAATTTTTAAAAACACTTCCAATTTAT
AGCATGTTTCAAGCTCTGGGGATGTTGCACCACCATTGAAAAACGGAAAA
ATCCTTTGCACGGTCATCAACTGTATCAAGCCTGGTACCGTCAGAAAGAT
CAATGACAGCAAAATGGCATTCAAAGAAATGGAAAATATAAGCAAATTCT
TGACTGGTTGTGAGGAATTGGGATGTGACAAAGGAGATCTTTTCCAAACT
GTTGATTTGTACGAATCACAAAATCCGAACCAGGTAGGTGACGTTTTTTA
TAAGAGTAGTTGACCCTGGTAAATAATGAGAATTCTGGAGTATCGGCCAA
AATTGTTGAATTTTTTTCACAGACTTTAACTTTAAATTGACAATAAAAAA
ACACTAATCTTGAATAGGATTTTTATGCGACTCCAAGTATTCGACCAAGA
TCCAAATTTCGAAAATGTTTTTCTCCGGAGTATTTCAAACAAATAAAATT
AGCATTGTTTTTCAATAGGTCATCAACGGCATAGTCGCTCTGGGTCGCAA
ATCCCAAACTATTGGCTACGACGGGCCATGTCTAGGTCCCCAAGAGTCAA
CAGAAAACAAGCGAGAATTCAGTGAGGAACAACTAAAAGCCGGAAAAAAC
GTCATTGGACTTCAAATGGGATCCAACAAAGGTGCATCACAAGCTGGACA
GAACTTCGGAAAAACCCGTGCTATCATTGATTAAATTTTCATGTATATTT
TCTTCAATTTTGGGTTAACTCAGGTCCAATTCAAAATTTAATTATTGTGA
CCTTTTTTGTTTTAATATTAATGTGTTTTAAAAGTAGATAAAATAATAAC
CAAAAAAATGTTAATAGGTATTTATGAGCGGAAAGAACCAAAGAATTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050341-exon-scaffold_169-1575043694:151150..151470 | TCONS_00050341-exon-scaffold_169-1575043694:151150..151470 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1575043694:150538..150768 | TCONS_00050341-exon-scaffold_169-1575043694:150538..150768 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1575043694:149921..150302 | TCONS_00050341-exon-scaffold_169-1575043694:149921..150302 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1510915933:151150..151470 | TCONS_00050341-exon-scaffold_169-1510915933:151150..151470 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1510915933:150538..150768 | TCONS_00050341-exon-scaffold_169-1510915933:150538..150768 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1510915933:149921..150302 | TCONS_00050341-exon-scaffold_169-1510915933:149921..150302 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1491911889:151150..151470 | TCONS_00050341-exon-scaffold_169-1491911889:151150..151470 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1491911889:150538..150768 | TCONS_00050341-exon-scaffold_169-1491911889:150538..150768 | Clytia hemisphaerica | exon |
| TCONS_00050341-exon-scaffold_169-1491911889:149921..150302 | TCONS_00050341-exon-scaffold_169-1491911889:149921..150302 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:149921..151470 - |
Blast
BLAST of TCONS_00050341 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 4.089e-39 Identity = 84/206 (40.78%), Postives = 118/206 (57.28%), Query Frame = 1
Query: 169 MANRPKGFGMTAELNRKKEAKFDPDLANDAFEWLRLVLIDGGHDDMADVLKHVSSSGDVAPPLKNGKILCTVINCIKPG---TVRKINDSKMAFKEMENISKFLTGCEELGCDKGDLFQTVDLYESQNPNQVINGIVALGRKSQTIG---YDG-PCLGPQESTENKREFSEEQLKAGKNVIGLQMGSNKGASQAGQN-FGKTRAII 762
MANR +G++ E+ K E K+D DL N +W+ L + D+ L +G +LC +IN + P + KI++SKMAFK+ME IS+FL E G D+FQTVDL+E ++ V ++ALG + T Y G P +++ +N+R FSEEQL+ G+NVIGLQMGSNKGASQAG +G R I+
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAE-------DIEHPPPGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
|
