TCONS_00050363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050363
Unique NameTCONS_00050363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050363 ID=TCONS_00050363|Name=TCONS_00050363|organism=Clytia hemisphaerica|type=transcript|length=713bp
aaataaaacaataataaaatcagataaaatttggacaatacaAAGCAAAT
CATGAACAAAATGCTCTCTCCAAGAAAATTCCTAACCAATGAATGAGGAA
CACTTAAAAAGTATCTATCCTGTATGATCCATCGTGTGATGACTGTTTCT
CAAAATCCTTCAGATAACTCGGATTATCATAAGTATTCACTTTACGATCT
GCATTTAACAAACCCGTTTGCACGTCCTCATCTCTCACAGTTGAAGAAAT
TGttcgaaatgtcaaaaaacccgATAAAAAGTCAACCAAGACCATGATGA
AAAATGCGTAGACTAAAACGTAATCCACTCCGTACGGCTTGACGTTTTTG
GTGAAACCTGATTGGTGGAGCATCAAAATTGGTAAACCAATGTTCAGTAT
CAAATCCAAAACGTAGGCGAAAAGAAGGAACATATTGCCACTGCCAGAAG
TGCAAAAGTATTTCATTGCTAGTACAAGAACAAGTTCAAATATGGTTGCA
AAGATCACCCAGCTACGGACAGTTGGAGAAAATTCTTGGATTCCGAAACG
GGATTGATAATCCGTTTGATTAATCCGATTTGGATGATCTTTCACGTATC
CATCAACAGATAAACGTGCGATCAAACTTGTGATGTGAAttaatacgcat
gcgtaaaagAACAATCTCCATTTTTCGTTGAACGTCATAGcgtttttatt
tacttaaaaattc
Run BLAST on NCBI

protein sequence of TCONS_00050363-protein

>TCONS_00050363-protein ID=TCONS_00050363-protein|Name=TCONS_00050363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MTFNEKWRLFFYACVLIHITSLIARLSVDGYVKDHPNRINQTDYQSRFGI
QEFSPTVRSWVIFATIFELVLVLAMKYFCTSGSGNMFLLFAYVLDLILNI
GLPILMLHQSGFTKNVKPYGVDYVLVYAFFIMVLVDFLSGFLTFRTISST
VRDEDVQTGLLNADRKVNTYDNPSYLKDFEKQSSHDGSYRIDTF
Run BLAST on NCBI

transcript from alignment at scaffold_169:324769..325481

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050363 ID=TCONS_00050363|Name=TCONS_00050363|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at scaffold_169:324769..325481 (Clytia hemisphaerica)
gaatttttaagtaaataaaaacgCTATGACGTTCAACGAAAAATGGAGAT
TGTTcttttacgcatgcgtattaaTTCACATCACAAGTTTGATCGCACGT
TTATCTGTTGATGGATACGTGAAAGATCATCCAAATCGGATTAATCAAAC
GGATTATCAATCCCGTTTCGGAATCCAAGAATTTTCTCCAACTGTCCGTA
GCTGGGTGATCTTTGCAACCATATTTGAACTTGTTCTTGTACTAGCAATG
AAATACTTTTGCACTTCTGGCAGTGGCAATATGTTCCTTCTTTTCGCCTA
CGTTTTGGATTTGATACTGAACATTGGTTTACCAATTTTGATGCTCCACC
AATCAGGTTTCACCAAAAACGTCAAGCCGTACGGAGTGGATTACGTTTTA
GTCTACGCATTTTTCATCATGGTCTTGGTTGACTTTTTATcgggtttttt
gacatttcgaaCAATTTCTTCAACTGTGAGAGATGAGGACGTGCAAACGG
GTTTGTTAAATGCAGATCGTAAAGTGAATACTTATGATAATCCGAGTTAT
CTGAAGGATTTTGAGAAACAGTCATCACACGATGGATCATACAGGATAGA
TACTTTTTAAGTGTTCCTCATTCATTGGTTAGGAATTTTCTTGGAGAGAG
CATTTTGTTCATGATTTGCTTtgtattgtccaaattttatctgattttat
tattgttttattt

Coding sequence (CDS) from alignment at scaffold_169:324769..325481

>TCONS_00050363 ID=TCONS_00050363|Name=TCONS_00050363|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_169:324769..325481 (Clytia hemisphaerica)
ATGACGTTCAACGAAAAATGGAGATTGTTcttttacgcatgcgtattaaT
TCACATCACAAGTTTGATCGCACGTTTATCTGTTGATGGATACGTGAAAG
ATCATCCAAATCGGATTAATCAAACGGATTATCAATCCCGTTTCGGAATC
CAAGAATTTTCTCCAACTGTCCGTAGCTGGGTGATCTTTGCAACCATATT
TGAACTTGTTCTTGTACTAGCAATGAAATACTTTTGCACTTCTGGCAGTG
GCAATATGTTCCTTCTTTTCGCCTACGTTTTGGATTTGATACTGAACATT
GGTTTACCAATTTTGATGCTCCACCAATCAGGTTTCACCAAAAACGTCAA
GCCGTACGGAGTGGATTACGTTTTAGTCTACGCATTTTTCATCATGGTCT
TGGTTGACTTTTTATcgggttttttgacatttcgaaCAATTTCTTCAACT
GTGAGAGATGAGGACGTGCAAACGGGTTTGTTAAATGCAGATCGTAAAGT
GAATACTTATGATAATCCGAGTTATCTGAAGGATTTTGAGAAACAGTCAT
CACACGATGGATCATACAGGATAGATACTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031890XLOC_031890Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050363-proteinTCONS_00050363-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050363-exon-scaffold_169-1491911889:324769..325481TCONS_00050363-exon-scaffold_169-1491911889:324769..325481Clytia hemisphaericaexon
TCONS_00050363-exon-scaffold_169-1510915933:324769..325481TCONS_00050363-exon-scaffold_169-1510915933:324769..325481Clytia hemisphaericaexon
TCONS_00050363-exon-scaffold_169-1575043694:324769..325481TCONS_00050363-exon-scaffold_169-1575043694:324769..325481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:324769..325481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140785	0.274575	0.398509	0.389879	1.42392	1.42525	1.81001	1.18616	1.48296	1.76341	2.35346	2.15652	3.97934	4.37567	5.35613	2.53081	3.43481	3.14143	8.53046	3.83684	2.04178	1.79264	4.35837	3.74225	4.38347	6.00312	2.89566	1.9572	1.71886	0.557215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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