TCONS_00050345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050345
Unique NameTCONS_00050345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050345 ID=TCONS_00050345|Name=TCONS_00050345|organism=Clytia hemisphaerica|type=transcript|length=808bp
CACGAAGCTTGGATTCGATTGCACGCTTAGCTGCTTTGAGTTCATTTTGT
TGTGCTATAAGTTTTTCCTTCAATGCTCCCGTTGCTCggtcaatttcatt
ttgaattcTCATTAATTGTTCTTCCATATACTTATGTTGTTTCTCGATGA
CTTCCCACATTTGCCCCATGATGCTATTGGACTGTCCGTTGAACGAACAC
GCCATACTCTTCATCGACTCGTACATACAGGTTGTGCTCTCGACAACTTC
ATTTACATTGTAATTCACACTGTTGATGGGTCCTTCGATGAGGAAGCCTA
CTGCTATGGTTAACATGAACGCACGGCCTCGCCCAGCCACAATTCCAGGT
AGGATCAACATCAAAATGCATCTGGTATGACGAGAGAAAACACTTAAAGT
ACCAACACTTAAAGTGAATGTTCCTGCTACAGCGGCACTAATGATCTCTT
TATCGTGAGTGACAAACGGGCTTAGCGAATCTGATGATGATTGACTGAAA
CTCAAGTTAAATTTCGCTTCGAGTTTCGTTTTGATCTTGTTTTTTAATAT
TGGAATTTCCTTCTCGAGATCATCCACAAAACACGAGGAGGAAGCATTTT
TCCGCTTAGAATGATCCTTCAATCCAGTGCTCGATGAAAACACCATGTAA
TACAGATACAAATAGAGCAAAATTCCGTATACGCAAATCAACGGTATGGC
TGCAAAGCGGGAGGTGGTCAGTAAATTTTTGAATTGTGAATAACATCCCG
GACTTTTGTTGTTGTGCTGATGATGACTTTTGTTGAGGGAGTTGGGATTT
GATTTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_169:404450..405311-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050345 ID=TCONS_00050345|Name=TCONS_00050345|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_169:404450..405311- (Clytia hemisphaerica)
CACGAAGCTTGGATTCGATTGCACGCTTAGCTGCTTTGAGTTCATTTTGT
TGTGCTATAAGTTTTTCCTTCAATGCTCCCGTTGCTCGGTCAATTTCATT
TTGAATTCTCATTAATTGTTCTTCCATATACTTATGTTGTTTCTCGATGA
CTTCCCACATTTGCCCCATGATGCTATTGGACTGTCCGTTGAACGAACAC
GCCATACTCTTCATCGACTCGTACATACAGGTTGTGCTCTCGACAACTTC
ATTTACATTGTAATTCACACTGTTGATGGGTCCTTCGATGAGGAAGCCTA
CTGCTATGGTTAACATGAACGCACGGCCTCGCCCAGCCACAATTCCAGGT
AGGATCAACATCAAAATGCATCTGGTATGACGAGAGAAAACACTTAAAGT
ACCAACACTTAAAGTGAATGTTCCTGCTACAGCGGCACTAATGATCTCTT
TATCGTGAGTGACAAACGGGCTTAGCGAATCTGATGATGATTGACTGAAA
CTCAAGTTAAATTTCGCTTCGAGTTTCGTTTTGATCTTGTTTTTTAATAT
TGGAATTTCCTTCTCGAGATCATCCACAAAACACGAGGAGGAAGCATTTT
TCCGCTTAGAATGATCCTTCAATCCAGTGCTCGATGAAAACACCATGTAA
TACAGATACAAATAGAGCAAAATTCCGTATACGCAAATCAACGGTATGGC
TGCAAAGCGGGAGGTGGTCAGCAACTTTTTGAATTGTGAATAGNACGGTA
TGGCTGCAAAGCGGGAGGTGGTCAGTAAATTTTTGAATTGTGAATAACAT
CCCGGACTTTTGTTGTTGTGCTGATGATGACTTTTGTTGAGGGAGTTGGG
ATTTGATTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031875XLOC_031875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050345-exon-scaffold_169-1575043694:404599..405311TCONS_00050345-exon-scaffold_169-1575043694:404599..405311Clytia hemisphaericaexon
TCONS_00050345-exon-scaffold_169-1575043694:404450..404544TCONS_00050345-exon-scaffold_169-1575043694:404450..404544Clytia hemisphaericaexon
TCONS_00050345-exon-scaffold_169-1510915933:404599..405311TCONS_00050345-exon-scaffold_169-1510915933:404599..405311Clytia hemisphaericaexon
TCONS_00050345-exon-scaffold_169-1510915933:404450..404544TCONS_00050345-exon-scaffold_169-1510915933:404450..404544Clytia hemisphaericaexon
TCONS_00050345-exon-scaffold_169-1491911889:404599..405311TCONS_00050345-exon-scaffold_169-1491911889:404599..405311Clytia hemisphaericaexon
TCONS_00050345-exon-scaffold_169-1491911889:404450..404544TCONS_00050345-exon-scaffold_169-1491911889:404450..404544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:404450..405311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.00546562	0	0.0340669	0	0.0378275	0	0	0	0.268895	0.0183014	0.0672636	0	0	0	0	0	0	0	0.0793515	0	0	0.299301	0	0	0.0657388	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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