|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050330 ID=TCONS_00050330|Name=TCONS_00050330|organism=Clytia hemisphaerica|type=transcript|length=2734bp
AACAGGCTAgtattttaattcaaaaaaccttttaatcTATTTTACATGCA
TGTCTCTCGCCCTTTGTCTTTTATTCTAtaggttgaaataaaaaaataag
aaatgaaaattatagACAAAGTCAGTacataaaataataaataattactC
AATTTCTGATGGTATGGATGGTGGAAAAAATTGGGAATGGCTAACAGAGA
ATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTGCTGAGT
CTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaactGATGTCAAA
TGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGTCAGTGC
CTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACCGCTGGTTGA
AGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGgagatgtt
tttgaaaaagctgGTGTTAATATATCTATTTTGAGTGCCAATTTGCAAGA
AAATCATCGGAAAATCTTTGAAAGCAGAGGGAGTATGGTAAAATCTGATC
AAACAAAATTCTCAGCGAGAGGTGTCAGCTGCATAATTCACCCAAAGAAT
CCTTTTGTTCCATCAATGCATTTTAACTTCAGATACTTCGAGACATCAAA
CAATGAAGATGAAATTGGCCATTTTTGGTTTGGCGGTGGAATTGATATGA
CACCAACCTATTTGGATCAGCAGgATGCTGAGCATTTTCACCAAACAATA
AAAACAGCCTGTGATAAACATGACAAAGATTATTATCCTCGATACAAGAA
ATTATGTGATGACAGTCTCTTCCTAGAAATCTGTGATGAATACCGAGGTA
TTGGTGGGTTCATGTTTAATGAATTGAAGGATGGAAATCTTGaagatttg
tttgattttgttgtgacGTGTGGACACGCTGTTCTACCCTCTTACATACC
TATTGTTAATAAACATTTAAATGATCCTTATGATGAAGAGAATATCTTTT
GGCAACGACAAAGGAGGGGAAGATATGTTTTATTCAACCTTTTGTATGAC
CGAGGTACACGTTTTGGTTTACTGACACCTGGCATAAGAGTGGAAAACGT
TTTAATTTCTATGCCATTGAATGCTGCTTGGGATATTCGTTATGTACCTA
CACCTGGTTCAAAAGAGGACGATATGTTACAGTTTTTGAAAAGGAAACCA
AAAGACTGGGCATGATTCTTgtctttattgattttcttcaaaCATTTAAG
TTTAACCTTTAAAATTTGCATGAAACTTGAATTAAAGGCTACTCGGGTTA
ATCAGGGTTCTTAGTCCTAGAAACATAAATTCTTTTTAATGTCGTTTATC
CTTTGTAAACCTGGGGACCTAATCTTATGTCGATTTTAGGGGTTAATAGC
TGGTTTAAAAGATTTAAAGatgtaaaaagattttaaggTGTTAATAGTTT
TTCTGTTTGTTATGTATAGATTTAGTTTTATTTGTAATGTATAGATTTAG
ATTTATTTCATTTCTATGAATTTGTTGTATGTTTagtgttttttttgaaa
attgattaaaagtAAGATATGGGGACGTGACTTAAAAAGGGCCTGAGTTG
GATAGAATAGCGTGGTGGGAGGGGGAGGTGCCTTCAGCCAAAAAGAGGAA
ATCTGTTCCAAATCTGCTCGCGCAATACTCTAAAACATATTTCTCTTGCT
ATGGGGAAGGGATGGGTTGgtgtattattttttaatattattccattttt
tttttgggaataacttttgaaccaatgaagtaaaattaaaaagtaataca
cgAAATTTTAAGTATATCTTTCCTCTTAATTTCCgaagcaatttttgaaa
aacctttCTACTACCTGCAATATCAAAttaaagagggtaacttatttctg
gCACGACCAGCAGACtattcataattttaaaaaccataatataattttaa
cttgttttttttttatcattggTACGAAAGGACCAACAAGATTGTAAATT
GCATAAATTTATCAGATGATATTCAGATTCGATAATTTTAATCACTCTGG
GCAGCTTAACGAACACCCGATCTGTGGTCAAGGTCCACCGCGTTCACAAC
CTATGAACGTAGAAGACTTTACAAATTCTTCTTGGGTTCAGTTggatttt
aaaactttattaagATTTTTTATTGATACACTTAactatagatttttttt
aaacagatatCTTATAGGTAACGTATTAGCATCATCGTCTCAAAACCTCA
ATTCTGTacatttgtttacattttccaTTATTaggatttttaaaaacaat
aatttttagctttttcactttttttctttaatttttaaattattttaagt
aTTGTAcattttttctagtttttctAACCCCAAAGTAAAGCAGATTTACC
CTAAACATGTTAGCTTTGTTGGTTCGGTAAGAACTTAACAGGCCGATGAT
TTATGGAAAATCTGCCAACTTTTTTCACGGTTGCCTTTAGTGCGGAAAGC
TTCTGGCGCGTTTCCTGTTGCTGTAAGTAAAAGGCTAATAATTCTTGGCT
CAATTTAGCATTATTGAGCAGTATCATTCAATTCAGAGCCATTTTAACCA
TAAAGAGAAATTGTTTAAACAAATTATCAAGGCTTGTATTGATACACCAA
TGTGTgcatatttcattttcatttttagattttataattagctttaattt
ttctttttaaattcatgTTAATTCAATATATCAG Run BLAST on NCBI protein sequence of TCONS_00050330-protein >TCONS_00050330-protein ID=TCONS_00050330-protein|Name=TCONS_00050330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MANREFLQKIDQFTSEDFCAESINCLQSLKNESKTDVKCRMELFVMYLQE
KLVSALQSYEPTRCFCIDRWLKDDTGGGISCVLQDGDVFEKAGVNISILS
ANLQENHRKIFESRGSMVKSDQTKFSARGVSCIIHPKNPFVPSMHFNFRY
FETSNNEDEIGHFWFGGGIDMTPTYLDQQDAEHFHQTIKTACDKHDKDYY
PRYKKLCDDSLFLEICDEYRGIGGFMFNELKDGNLEDLFDFVVTCGHAVL
PSYIPIVNKHLNDPYDEENIFWQRQRRGRYVLFNLLYDRGTRFGLLTPGI
RVENVLISMPLNAAWDIRYVPTPGSKEDDMLQFLKRKPKDWA Run BLAST on NCBI transcript from alignment at scaffold_169:461906..467399+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050330 ID=TCONS_00050330|Name=TCONS_00050330|organism=Clytia hemisphaerica|type=transcript|length=5494bp|location=Sequence derived from alignment at scaffold_169:461906..467399+ (Clytia hemisphaerica)
AACAGGCTAgtattttaattcaaaaaaccttttaatcTATTTTACATGCA
TGTCTCTCGCCCTTTGTCTTTTATTCTAtaggttgaaataaaaaaataag
aaatgaaaattatagACAAAGTCAGTacataaaataataaataattactC
AATTTCTGATGGTATGGATGGTGGAAAAAATTGGGAATGGCTAACAGAGA
ATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTGCTGAGT
CTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaactGATGTCAAA
TGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGTCAGTGC
CTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACCGCTGGTTGA
AGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGGTAAAGTC
TTTTACAGTTTTTTATCTCTGTcattacttgacctcgggcaatatttctc
agtacagccctcactaaccggtcaaaTCGAGTNCCAGAGTTTACTCTCAG
AATTACTCTGTATAGCACAACTGTGGTGTGTGTGATTATACAAATATTTT
ATTGATGTTGTTCTTGCAAATGAGAAGAGGTCCTCCACATAGTATGTTTG
CAAAACTTTTTCGGATATAGCCTTTTCTAATTCAGAACACTGGCGTTGGG
CAAAAATTCTGGGTTCTATAGTACAGTGAGCACTTTTACGTCGGCAAAAG
CCAAATTTACGTCAGAATTAGAACGGCTGAGNTAAAAGTTTCAAGGATGA
AAAAATCTAGGGAGAGCAAGTCAAGTGTATTTTTGCTCCTCATTAAATAG
AATTCATAGAATTGAATCTTCCGCTCTGACATTGATcatactttcttttt
ttctccatctaggagatgtttttgaaaaagctgGTGTTAATATATCTATT
TTGAGTGCCAATTTGCAAGAAAATCATCGGAAAATCTTTGAAAGCAGAGG
GAGTATGGTAAAATCTGATCAAACAAAATTCTCAGCGAGAGGTTCGattg
ttatcatttttaaagTTGTCCCGTAATTTACACTTtacttcttcatcttt
attATTCCACacgctgactcagcaaaaaaatgATTAATTTCAATACGATT
TGGATTGAGTTAAAGGACATACCATTTGCTCACTTACTTTGCTTAGACAC
ATtcttaacaaaggaaaaaacaattttctctTCTTGCTGCGCCACACGAT
CACTAATTTTGAGAAATGTTATTGTTAACTATGCTTTGtcagtattcatg
atatgcaccattacaatgtcttctaggggatccaacagctgattgtttga
aagtgacgtattgactgactTTACGTCACCTACAACCAATCATCTATTGG
ATCCGTGATGTAATTTCAGAatacattgcaatggtgcatatcataaaaaG
AGCAGACAGGGTCACCTTTTTCTATGTcataaatctttaaattttaaccT
TCATTGCAAGATAATCTCTTCGTTGTGTTTTATCTAATTTAGGTGTCAGC
TGCATAATTCACCCAAAGAATCCTTTTGTTCCATCAATGCATTTTAACTT
CAGATACTTCGAGACATCAAACAATGAAGATGAAATTGGCCATTTTTGGT
TTGGCGGTGGAATTGATATGACACCAACCTATTTGGATCAGCAGGTTGTT
ATGCAGCCAAATACAAataattatatatatatatttaattctttttttta
ttcaattggagTAAAATATGAAGCATTAAGATTGTAACCATACTGTGTCA
ATCAAACAGAATTGACCATCAAAGAAATGAAACAAATTCTAATTACTTGG
TCCAGAGTTTACTCTCAGAATTACTCTGTATAGCACAACTGTGGTGTGTG
TGATTATACAAATATTTTATTGATGTTGTTCTTGCAAATGAGAAGAGGTC
CTCCACATAGTATGTTTGCAAAACTTTTTCGGATATAGCCTTTTCTAATT
CAGAACACTGGCGTTGGGCAAAAATTCTGGGTTCTATAGTACAGTGAGCA
CTTTTACGTCGGCAAAAGCCAAATTTACGTCAGAATTAGAACGGCTGAGA
CACTCGACACCCCCTCCCCTTGTATGCAGAGAACACTAGATATGCCTTCA
TCTAAATAATAGACACGCTTTTGCTAATCAACCTCCCCCCTTTCACTGCA
AACGTACTATGGATAGCCTCGAATGATAACTcaataatattatattgtta
gATAACTctactttagacagcccacttttcGCCCAGCCTATTCtgattgt
gaattaaagttggcATAAAGTGGACTGACTAAAGttaatgcattgccctc
ttttgacgtcaatgcaatgacttctttcaatcttttccaagcaTAGATTT
TAACTACCAACTTTTTGTCTACTCTAAGAATTAAAATAGGAATGGCAAAA
AGTGAAAAGTCTAAACCAGAGcttaaaattttataaacttgtagttcatc
ttcttctttttttattgtaggATGCTGAGCATTTTCACCAAACAATAAAA
ACAGCCTGTGATAAACATGACAAAGATTATTATCCTCGATACAAGAAATT
ATGTGATGACAGTCTCTTCCTAGAAATCTGTGGTAACTTTTCAGTTCGAA
TTCAATTtggatttttggtcattttaaaCTCTTCTTTAGAACATTTATGT
AGTCTAAActtctcaaaaaaattctaatcaTGCAATTGAATACTCATGTA
ATAACTCTCATAATAATCTTATCGTTATTCATGATATccgttgcaatgtc
ttctaacgTTAATTCACAGACCCAACAACTccttggttgtaagtgacgta
aaatctgACAATACATAatttgcaaccaatcagctgttgggttcgtgatg
taatgtcagaagacatcacaatggcgcatatcatgaattcttaTTATTCT
GGTGACCGTAGcataaaggtagagcatccagctacggtgcgcaaggttgt
gggctCCCAGTCGGGTTTCCCAAAAtgatacttgatgcctctctactTGA
TGCTCACCAACTAAAGAGACGAATCAAGAGTAAGttgagaaatccaggga
aagaagtggcgccctctcctaccatcaggtagacagctatacgaaaaggg
agccttcgggtcgccctcgactgcggttgCAAACTTACTACAACTGATTT
CTCATACAGATGAATACCGAGGTATTGGTGGGTTCATGTTTAATGAATTG
AAGGATGGAAATCTTGaagatttgtttgattttgttgtgacGTGTGGACA
CGCTGTTCTACCCTCTTACATACCTATTGTTAATAAACATTTAAATGATC
CTTATGATGAAGAGAATATCTTTTGGCAACGACAAAGGAGGGGAAGGTAT
ATGTTTGTTGGTGGTATTAATTTATAATattcattttttcatcaatttta
actacatttctttatttttgtttaataatAGCTACATATTGGTCATTTTG
GCCTATACATGTTATCTAACATCAAATTAGAAACTATTCATTTCATTTTC
TCGCATGTCTGAAAACAAGCTCCAGTTTAGACGGCTGACCTTCGGCCCTG
CCAATTCTGATTTTGGAGTAGGCAGAAAGTGGGCAAAAAGTTGGCAGTTA
GTGGATGGGCAGAAAGGTTGACAGACGTAATAAATCTTCTTAAAACTGCC
TACGAAAtgtaaactttttaaaatttattcctTCCTTTCTGTAACTGCct
gtttttgtaattttttcttccaTCTTTTTCAGATATGTTTTATTCAACCT
TTTGTATGACCGAGGTACACGTTTTGGTTTACTGACACCTGGCATAAGAG
TGGAAAACGTTTTAATTTCTATGCCATTGAATGCTGCTTGGGATATTCGT
TATGTACCTACACCTGGTTCAAAAGAGGACGATATGTTACAGTTTTTGAA
AAGGAAACCAAAAGACTGGGCATGATTCTTgtctttattgattttcttca
aaCATTTAAGTTTAACCTTTAAAATTTGCATGAAACTTGAATTAAAGGCT
ACTCGGGTTAATCAGGGTTCTTAGTCCTAGAAACATAAATTCTTTTTAAT
GTCGTTTATCCTTTGTAAACCTGGGGACCTAATCTTATGTCGATTTTAGG
GGTTAATAGCTGGTTTAAAAGATTTAAAGatgtaaaaagattttaaggTG
TTAATAGTTTTTCTGTTTGTTATGTATAGATTTAGTTTTATTTGTAATGT
ATAGATTTAGATTTATTTCATTTCTATGAATTTGTTGTATGTTTagtgtt
ttttttgaaaattgattaaaagtAAGATATGGGGACGTGACTTAAAAAGG
GCCTGAGTTGGATAGAATAGCGTGGTGGGAGGGGGAGGTGCCTTCAGCCA
AAAAGAGGAAATCTGTTCCAAATCTGCTCGCGCAATACTCTAAAACATAT
TTCTCTTGCTATGGGGAAGGGATGGGTTGgtgtattattttttaatatta
ttccattttttttttgggaataacttttgaaccaatgaagtaaaattaaa
aagtaatacacgAAATTTTAAGTATATCTTTCCTCTTAATTTCCgaagca
atttttgaaaaacctttCTACTACCTGCAATATCAAAttaaagagggtaa
cttatttctggCACGACCAGCAGACtattcataattttaaaaaccataat
ataattttaacttgttttttttttatcattggTACGAAAGGACCAACAAG
ATTGTAAATTGCATAAATTTATCAGATGATATTCAGATTCGATAATTTTA
ATCACTCTGGGCAGCTTAACGAACACCCGATCTGTGGTCAAGGTCCACCG
CGTTCACAACCTATGAACGTAGAAGACTTTACAAATTCTTCTTGGGTTCA
GTTggattttaaaactttattaagATTTTTTATTGATACACTTAactata
gattttttttaaacagatatCTTATAGGTAACGTATTAGCATCATCGTCT
CAAAACCTCAATTCTGTacatttgtttacattttccaTTATTaggatttt
taaaaacaataatttttagctttttcactttttttctttaatttttaaat
tattttaagtaTTGTAcattttttctagtttttctAACCCCAAAGTAAAG
CAGATTTACCCTAAACATGTTAGCTTTGTTGGTTCGGTAAGAACTTAACA
GGCCGATGATTTATGGAAAATCTGCCAACTTTTTTCACGGTTGCCTTTAG
TGCGGAAAGCTTCTGGCGCGTTTCCTGTTGCTGTAAGTAAAAGGCTAATA
ATTCTTGGCTCAATTTAGCATTATTGAGCAGTATCATTCAATTCAGAGCC
ATTTTAACCATAAAGAGAAATTGTTTAAACAAATTATCAAGGCTTGTATT
GATACACCAATGTGTgcatatttcattttcatttttagattttataatta
gctttaatttttctttttaaattcatgTTAATTCAATATATCAG Coding sequence (CDS) from alignment at scaffold_169:461906..467399+ >TCONS_00050330 ID=TCONS_00050330|Name=TCONS_00050330|organism=Clytia hemisphaerica|type=CDS|length=6174bp|location=Sequence derived from alignment at scaffold_169:461906..467399+ (Clytia hemisphaerica)
ATGGCTAACAGAGAATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGA
CTTTTGTGCTGAGTCTATAAACTGTCTTCAATCTCtcaaaaatgaatcaa
aaactGATGTCAAATGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAG
AAATTGGTCAGTGCCTTACAATCATACGAACCAACAAGATGCTTTTGTAT
TGACCGCTGGTTGAAGGATGACACTGGTGGTGGAATTAGTTGCGTTTTAC
AAGACGgagatgtttttgaaaaagctgGTGTTAATATATCTATTTTGAGT
GCCAATTTGCAAGAAAATCATCGGAAAATCTTTGAAAGCAGAGGGAGTAT
GGTAAAATCTGATCAAACAAAATTCTCAGCGAGAGGTGTCAGCTGCATAA
TTCACCCAAAGAATCCTTTTGTTCCATCAATGCATTTTAACTTCAGATAC
TTCGAGACATCAAACAATGAAGATGAAATTGGCCATTTTTGGTTTGGCGG
TGGAATTGATATGACACCAACCTATTTGGATCAGCAGgATGCTGAGCATT
TTCACCAAACAATAAAAACAGCCTGTGATAAACATGACAAAGATTATTAT
CCTCGATACAAGAAATTATGTGATGACAGTCTCTTCCTAGAAATCTGTGA
TGAATACCGAGGTATTGGTGGGTTCATGTTTAATGAATTGAAGGATGGAA
ATCTTGaagatttgtttgattttgttgtgacGTGTGGACACGCTGTTCTA
CCCTCTTACATACCTATTGTTAATAAACATTTAAATGATCCTTATGATGA
AGAGAATATCTTTTGGCAACGACAAAGGAGGGGAAGATATGTTTTATTCA
ACCTTTTGTATGACCGAGGTACACGTTTTGGTTTACTGACACCTGGCATA
AGAGTGGAAAACGTTTTAATTTCTATGCCATTGAATGCTGCTTGGGATAT
TCGTTATGTACCTACACCTGGTTCAAAAGAGGACGATATGTTACAGTTTT
TGAAAAGGAAACCAAAAGACTGGGCATGAATGGCTAACAGAGAATTCCTT
CAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTGCTGAGTCTATAAA
CTGTCTTCAATCTCtcaaaaatgaatcaaaaactGATGTCAAATGTCGTA
TGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGTCAGTGCCTTACAA
TCATACGAACCAACAAGATGCTTTTGTATTGACCGCTGGTTGAAGGATGA
CACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGgagatgtttttgaaa
aagctgGTGTTAATATATCTATTTTGAGTGCCAATTTGCAAGAAAATCAT
CGGAAAATCTTTGAAAGCAGAGGGAGTATGGTAAAATCTGATCAAACAAA
ATTCTCAGCGAGAGGTGTCAGCTGCATAATTCACCCAAAGAATCCTTTTG
TTCCATCAATGCATTTTAACTTCAGATACTTCGAGACATCAAACAATGAA
GATGAAATTGGCCATTTTTGGTTTGGCGGTGGAATTGATATGACACCAAC
CTATTTGGATCAGCAGgATGCTGAGCATTTTCACCAAACAATAAAAACAG
CCTGTGATAAACATGACAAAGATTATTATCCTCGATACAAGAAATTATGT
GATGACAGTCTCTTCCTAGAAATCTGTGATGAATACCGAGGTATTGGTGG
GTTCATGTTTAATGAATTGAAGGATGGAAATCTTGaagatttgtttgatt
ttgttgtgacGTGTGGACACGCTGTTCTACCCTCTTACATACCTATTGTT
AATAAACATTTAAATGATCCTTATGATGAAGAGAATATCTTTTGGCAACG
ACAAAGGAGGGGAAGATATGTTTTATTCAACCTTTTGTATGACCGAGGTA
CACGTTTTGGTTTACTGACACCTGGCATAAGAGTGGAAAACGTTTTAATT
TCTATGCCATTGAATGCTGCTTGGGATATTCGTTATGTACCTACACCTGG
TTCAAAAGAGGACGATATGTTACAGTTTTTGAAAAGGAAACCAAAAGACT
GGGCATGAATGGCTAACAGAGAATTCCTTCAGAAAATTGACCAATTCACT
TCAGAAGACTTTTGTGCTGAGTCTATAAACTGTCTTCAATCTCtcaaaaa
tgaatcaaaaactGATGTCAAATGTCGTATGGAATTGTTTGTTATGTACC
TTCAAGAGAAATTGGTCAGTGCCTTACAATCATACGAACCAACAAGATGC
TTTTGTATTGACCGCTGGTTGAAGGATGACACTGGTGGTGGAATTAGTTG
CGTTTTACAAGACGgagatgtttttgaaaaagctgGTGTTAATATATCTA
TTTTGAGTGCCAATTTGCAAGAAAATCATCGGAAAATCTTTGAAAGCAGA
GGGAGTATGGTAAAATCTGATCAAACAAAATTCTCAGCGAGAGGTGTCAG
CTGCATAATTCACCCAAAGAATCCTTTTGTTCCATCAATGCATTTTAACT
TCAGATACTTCGAGACATCAAACAATGAAGATGAAATTGGCCATTTTTGG
TTTGGCGGTGGAATTGATATGACACCAACCTATTTGGATCAGCAGgATGC
TGAGCATTTTCACCAAACAATAAAAACAGCCTGTGATAAACATGACAAAG
ATTATTATCCTCGATACAAGAAATTATGTGATGACAGTCTCTTCCTAGAA
ATCTGTGATGAATACCGAGGTATTGGTGGGTTCATGTTTAATGAATTGAA
GGATGGAAATCTTGaagatttgtttgattttgttgtgacGTGTGGACACG
CTGTTCTACCCTCTTACATACCTATTGTTAATAAACATTTAAATGATCCT
TATGATGAAGAGAATATCTTTTGGCAACGACAAAGGAGGGGAAGATATGT
TTTATTCAACCTTTTGTATGACCGAGGTACACGTTTTGGTTTACTGACAC
CTGGCATAAGAGTGGAAAACGTTTTAATTTCTATGCCATTGAATGCTGCT
TGGGATATTCGTTATGTACCTACACCTGGTTCAAAAGAGGACGATATGTT
ACAGTTTTTGAAAAGGAAACCAAAAGACTGGGCATGAATGGCTAACAGAG
AATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTGCTGAG
TCTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaactGATGTCAA
ATGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGTCAGTG
CCTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACCGCTGGTTG
AAGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGgagatgt
ttttgaaaaagctgGTGTTAATATATCTATTTTGAGTGCCAATTTGCAAG
AAAATCATCGGAAAATCTTTGAAAGCAGAGGGAGTATGGTAAAATCTGAT
CAAACAAAATTCTCAGCGAGAGGTGTCAGCTGCATAATTCACCCAAAGAA
TCCTTTTGTTCCATCAATGCATTTTAACTTCAGATACTTCGAGACATCAA
ACAATGAAGATGAAATTGGCCATTTTTGGTTTGGCGGTGGAATTGATATG
ACACCAACCTATTTGGATCAGCAGgATGCTGAGCATTTTCACCAAACAAT
AAAAACAGCCTGTGATAAACATGACAAAGATTATTATCCTCGATACAAGA
AATTATGTGATGACAGTCTCTTCCTAGAAATCTGTGATGAATACCGAGGT
ATTGGTGGGTTCATGTTTAATGAATTGAAGGATGGAAATCTTGaagattt
gtttgattttgttgtgacGTGTGGACACGCTGTTCTACCCTCTTACATAC
CTATTGTTAATAAACATTTAAATGATCCTTATGATGAAGAGAATATCTTT
TGGCAACGACAAAGGAGGGGAAGATATGTTTTATTCAACCTTTTGTATGA
CCGAGGTACACGTTTTGGTTTACTGACACCTGGCATAAGAGTGGAAAACG
TTTTAATTTCTATGCCATTGAATGCTGCTTGGGATATTCGTTATGTACCT
ACACCTGGTTCAAAAGAGGACGATATGTTACAGTTTTTGAAAAGGAAACC
AAAAGACTGGGCATGAATGGCTAACAGAGAATTCCTTCAGAAAATTGACC
AATTCACTTCAGAAGACTTTTGTGCTGAGTCTATAAACTGTCTTCAATCT
CtcaaaaatgaatcaaaaactGATGTCAAATGTCGTATGGAATTGTTTGT
TATGTACCTTCAAGAGAAATTGGTCAGTGCCTTACAATCATACGAACCAA
CAAGATGCTTTTGTATTGACCGCTGGTTGAAGGATGACACTGGTGGTGGA
ATTAGTTGCGTTTTACAAGACGgagatgtttttgaaaaagctgGTGTTAA
TATATCTATTTTGAGTGCCAATTTGCAAGAAAATCATCGGAAAATCTTTG
AAAGCAGAGGGAGTATGGTAAAATCTGATCAAACAAAATTCTCAGCGAGA
GGTGTCAGCTGCATAATTCACCCAAAGAATCCTTTTGTTCCATCAATGCA
TTTTAACTTCAGATACTTCGAGACATCAAACAATGAAGATGAAATTGGCC
ATTTTTGGTTTGGCGGTGGAATTGATATGACACCAACCTATTTGGATCAG
CAGgATGCTGAGCATTTTCACCAAACAATAAAAACAGCCTGTGATAAACA
TGACAAAGATTATTATCCTCGATACAAGAAATTATGTGATGACAGTCTCT
TCCTAGAAATCTGTGATGAATACCGAGGTATTGGTGGGTTCATGTTTAAT
GAATTGAAGGATGGAAATCTTGaagatttgtttgattttgttgtgacGTG
TGGACACGCTGTTCTACCCTCTTACATACCTATTGTTAATAAACATTTAA
ATGATCCTTATGATGAAGAGAATATCTTTTGGCAACGACAAAGGAGGGGA
AGATATGTTTTATTCAACCTTTTGTATGACCGAGGTACACGTTTTGGTTT
ACTGACACCTGGCATAAGAGTGGAAAACGTTTTAATTTCTATGCCATTGA
ATGCTGCTTGGGATATTCGTTATGTACCTACACCTGGTTCAAAAGAGGAC
GATATGTTACAGTTTTTGAAAAGGAAACCAAAAGACTGGGCATGAATGGC
TAACAGAGAATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTT
GTGCTGAGTCTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaact
GATGTCAAATGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATT
GGTCAGTGCCTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACC
GCTGGTTGAAGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGAC
GgagatgtttttgaaaaagctgGTGTTAATATATCTATTTTGAGTGCCAA
TTTGCAAGAAAATCATCGGAAAATCTTTGAAAGCAGAGGGAGTATGGTAA
AATCTGATCAAACAAAATTCTCAGCGAGAGGTGTCAGCTGCATAATTCAC
CCAAAGAATCCTTTTGTTCCATCAATGCATTTTAACTTCAGATACTTCGA
GACATCAAACAATGAAGATGAAATTGGCCATTTTTGGTTTGGCGGTGGAA
TTGATATGACACCAACCTATTTGGATCAGCAGgATGCTGAGCATTTTCAC
CAAACAATAAAAACAGCCTGTGATAAACATGACAAAGATTATTATCCTCG
ATACAAGAAATTATGTGATGACAGTCTCTTCCTAGAAATCTGTGATGAAT
ACCGAGGTATTGGTGGGTTCATGTTTAATGAATTGAAGGATGGAAATCTT
GaagatttgtttgattttgttgtgacGTGTGGACACGCTGTTCTACCCTC
TTACATACCTATTGTTAATAAACATTTAAATGATCCTTATGATGAAGAGA
ATATCTTTTGGCAACGACAAAGGAGGGGAAGATATGTTTTATTCAACCTT
TTGTATGACCGAGGTACACGTTTTGGTTTACTGACACCTGGCATAAGAGT
GGAAAACGTTTTAATTTCTATGCCATTGAATGCTGCTTGGGATATTCGTT
ATGTACCTACACCTGGTTCAAAAGAGGACGATATGTTACAGTTTTTGAAA
AGGAAACCAAAAGACTGGGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050330-exon-scaffold_169-1491911889:461906..462347 | TCONS_00050330-exon-scaffold_169-1491911889:461906..462347 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1510915933:461906..462347 | TCONS_00050330-exon-scaffold_169-1510915933:461906..462347 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1575043694:461906..462347 | TCONS_00050330-exon-scaffold_169-1575043694:461906..462347 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1491911889:462818..462946 | TCONS_00050330-exon-scaffold_169-1491911889:462818..462946 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1510915933:462818..462946 | TCONS_00050330-exon-scaffold_169-1510915933:462818..462946 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1575043694:462818..462946 | TCONS_00050330-exon-scaffold_169-1575043694:462818..462946 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1491911889:463448..463599 | TCONS_00050330-exon-scaffold_169-1491911889:463448..463599 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1510915933:463448..463599 | TCONS_00050330-exon-scaffold_169-1510915933:463448..463599 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1575043694:463448..463599 | TCONS_00050330-exon-scaffold_169-1575043694:463448..463599 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1491911889:464426..464537 | TCONS_00050330-exon-scaffold_169-1491911889:464426..464537 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1510915933:464426..464537 | TCONS_00050330-exon-scaffold_169-1510915933:464426..464537 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1575043694:464426..464537 | TCONS_00050330-exon-scaffold_169-1575043694:464426..464537 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1491911889:465115..465301 | TCONS_00050330-exon-scaffold_169-1491911889:465115..465301 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1510915933:465115..465301 | TCONS_00050330-exon-scaffold_169-1510915933:465115..465301 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1575043694:465115..465301 | TCONS_00050330-exon-scaffold_169-1575043694:465115..465301 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1491911889:465688..467399 | TCONS_00050330-exon-scaffold_169-1491911889:465688..467399 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1510915933:465688..467399 | TCONS_00050330-exon-scaffold_169-1510915933:465688..467399 | Clytia hemisphaerica | exon |
| TCONS_00050330-exon-scaffold_169-1575043694:465688..467399 | TCONS_00050330-exon-scaffold_169-1575043694:465688..467399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:461906..467399 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001260 | Coprogen_oxidase_aer |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004109 | coproporphyrinogen oxidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006779 | porphyrin-containing compound biosynthetic process |
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006779 |
porphyrin-containing compound biosynthetic process |
| molecular_function |
GO:0004109 |
coproporphyrinogen oxidase activity |
Blast
BLAST of TCONS_00050330 vs. Swiss-Prot (Human)
Match: HEM6 (Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3) HSP 1 Score: 337.806 bits (865), Expect = 2.215e-105 Identity = 162/327 (49.54%), Postives = 219/327 (66.97%), Query Frame = 1
Query: 235 DFCAESINCLQSLKNESKTDVKCRMELFVMYLQEKLVSALQSYEPTRCFCIDRWLKDDTGGGISCVLQDGDVFEKAGVNISILSANLQENHRKIFESRGSMVKSDQTK--FSARGVSCIIHPKNPFVPSMHFNFRYFETSNNEDEIGHFWFGGGIDMTPTYLDQQDAEHFHQTIKTACDKHDKDYYPRYKKLCDDSLFLEICDEYRGIGGFMFNELKDGNLEDLFDFVVTCGHAVLPSYIPIVNKHLNDPYDEENIFWQRQRRGRYVLFNLLYDRGTRFGLLTPGIRVENVLISMPLNAAWDIRYVPTPGSKEDDMLQFLKRKPKDW 1209
F A + L L+ D+K +MEL ++ Q ++ AL + F +DRW + + GGGISCVLQDG VFEKAGV+IS++ NL E K SRG ++K+ K F A GVS +IHPKNP P++HFN+RYFE D +WFGGG D+TPTYL+Q+DA HFH+T+K ACD+H D YP++KK CDD F+ E RGIGG F++L + E++F FV +C AV+PSYIP+V KH +D + + WQ+ RRGRYV FNLLYDRGT+FGL TPG R+E++L+S+PL A W+ + P+ SKE ++L+ L R P+DW
Sbjct: 129 SFMAPPVTDLGELRRRP-GDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEV-EEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVL-RHPRDW 452
The following BLAST results are available for this feature:
|
