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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050334 ID=TCONS_00050334|Name=TCONS_00050334|organism=Clytia hemisphaerica|type=transcript|length=421bp
tgatttttaattgaaaagggaagaagttGCAGGTTGCAGGTACATAATCT
CACGATCTCATGCTTCATCTTCATTTATTTCgaGAAATGGATCAAATGAA
GCGGAGACGGTTTGTCAATATCACAATCATTACGGACTGCTTTCACTAAA
CTCAAGGAGTGACTGAAAGCCTGAGACAGCTGTGCCACCACCAATGTTAC
CGATTGTTACCATTATGAGCTGTTCAGGGAGAGCGTGTTGCTCGAGAGtc
gtgaaaaagaaaataagaaccaccttttttattaaagttaacaatttata
aaataatatacgTTACGAAATAAAtagaacattaaaaaaagtggccaaaa
ataaaaatgaggccATTGATCATTACAATCAAATTAATAGAATATAGACT
GTAACTTCGttggtctttctt Run BLAST on NCBI transcript from alignment at scaffold_169:507021..509096+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050334 ID=TCONS_00050334|Name=TCONS_00050334|organism=Clytia hemisphaerica|type=transcript|length=2076bp|location=Sequence derived from alignment at scaffold_169:507021..509096+ (Clytia hemisphaerica)
tgatttttaattgaaaagggaagaagttGCAGGTTGCAGGTACATAATCT
CACGATCTCATGCTTCATCTTCATTTATTTCGTAAGAAGTCTGCTTTACA
CTTCTTTCTGTATTCTTTCTTCGCCTTAGTTTTTATACCTATGTATGGTA
CTAGATTCGGCTAAAGTCAATGATGGCTACACTTTTACTATACGTGctac
ccactgacctttatataccctggacaaagcttctcaatcccagccaagca
aaatctttgatcagagttttttgaaaattggtaccctaatgtcggcacta
ctcgatagcggtgtaaatgcatcgagagcgctaggtctacttttcctcaa
attcttttgatgatgtacagtcaggaacagtcgccttattaggccaggcg
tagttaatcgatataatcgataatcttgagtaatcgataaataatcgata
agtaatcgatggattagatatcgattaaccgatagaatcgatagNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtatcgattacttatcaatcatgtatcgattgttaacaatcat
cgattacttatcgttcgtgcattgattacttatcaattatttacttatct
tcaATCACGTACTGACGTAACGTACAGTCAggcaaatccttgcatttgca
cacggggtgtgcatttgcaacgggttttcccgaccctgtgcaaatgagct
agaacgcGTCAGGCAAATACgtcaatttcaactttaaagtgAAAACGGGG
GAAAATGAAGACGAACGgggctttcattttttctttacgaGATTCTTCAT
TCGTTAATAAAGAATTGTatccatggaaaaaaaattccacccatgcaatc
ttttttaatcaagcaaaatatttttggtaaatttgagTATTTCTAAACGC
CCGCGTCTAGATCGCGCGATTTCGCTACTCGAAAAATTTACATACGGAAC
CCGCCCTTACCCGGCTTTCTTTATGATGCGAACGGCCTTGAGGATCGTTA
AAATGCGGTTTTCGTATTTGCGTTAGGTCGATATAGAATACTATTCAGTG
ATACCTAACACTCCTAAAAATACACCCTGCATCAGAATCATATCCATATT
TTCTTCCCAAACATTAGACTTAGCTTCACTGCTAACAAAAACGACTGATC
CGATTATTTCAATACTTTGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCAAATaaagtttttacttttctttttatt
caggaGAAATGGATCAAATGAAGCGGAGACGGTTTGTCAATATCACAATC
ATTACGGACTGCTTTCACTAAACTCAAGGAGTGACTGAAAGCCTGAGACA
GCGTAAGTTACATTGTTGTATGCATGAAACAATTATCTCATCTAGATCTA
TGTTGAAATCTAGATCGATTTTTGTGCTTCCCATCAATTAAGTGTGCGTT
ACTTGTTACCGTAACTTTGGCAGTTTATCCACAGACTTTTGAGCGACAAT
CACTTTGTCTAGTTTCAAGCTTAACAAAATCTACCGTGCCACGGATCTTC
CACAGTCATaacttcaattttcattctttatttaGTGTGCCACCACCAAT
GTTACCGATTGTTACCATTATGAGCTGTTCAGGGAGAGCGTGTTGCTCGA
GAGtcgtgaaaaagaaaataagaaccaccttttttattaaagttaacaat
ttataaaataatatacgTTACGAAATAAAtagaacattaaaaaaagtggc
caaaaataaaaatgaggccATTGATCATTACAATCAAATTAATAGAATAT
AGACTGTAACTTCGttggtctttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050334-exon-scaffold_169-1491911889:507021..507101 | TCONS_00050334-exon-scaffold_169-1491911889:507021..507101 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1510915933:507021..507101 | TCONS_00050334-exon-scaffold_169-1510915933:507021..507101 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1575043694:507021..507101 | TCONS_00050334-exon-scaffold_169-1575043694:507021..507101 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1491911889:508524..508622 | TCONS_00050334-exon-scaffold_169-1491911889:508524..508622 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1510915933:508524..508622 | TCONS_00050334-exon-scaffold_169-1510915933:508524..508622 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1575043694:508524..508622 | TCONS_00050334-exon-scaffold_169-1575043694:508524..508622 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1491911889:508856..509096 | TCONS_00050334-exon-scaffold_169-1491911889:508856..509096 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1510915933:508856..509096 | TCONS_00050334-exon-scaffold_169-1510915933:508856..509096 | Clytia hemisphaerica | exon |
| TCONS_00050334-exon-scaffold_169-1575043694:508856..509096 | TCONS_00050334-exon-scaffold_169-1575043694:508856..509096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:507021..509096 + |
Blast
The following BLAST results are available for this feature:
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