TCONS_00050401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050401
Unique NameTCONS_00050401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050401 ID=TCONS_00050401|Name=TCONS_00050401|organism=Clytia hemisphaerica|type=transcript|length=863bp
aaataagaactttttaagaACTTTCTTAGGCCTAAAACGCTTTTGTGAAA
AAGTgtgtatttttttctaaaccGCCTGATTTGGATTCTGTTTACTCATG
GGTGTCAACAGGAAAATTTCCATACCCGGAAATTTTAAACAACCCCCGtt
tataaaaattgtaaatttttctaaaacgttttattgctttgatttaaaaa
aaaagatttttcgcaTCTCTATTGTCAGCTTTAAACACCAGTAGGTCAAA
TCAGCATTCCTGCTTGTTTTGATGTGACTTAAAATGAGCTTCATGACTCT
TCTCCTGATTTAAGttattttaaattaaatttttcttaaatctttAAGAC
CGGTCCATCCTAAGCCAATTACAAAATTTTGTGCCGAGAATATTTTGTAA
TAGAGCAggattttgaagaaattcttttACATTTTGGGAATGTTTAAGAC
TCGCAATTCTTATGTTTAAACGATTGTTATGAACCTATTCTGCTCGACAA
TCTTCTCTTTATTTGTAACGATGCAAAACGAAACCGCAAGCTATATCAGA
TGACTTTTTATACGTTTCTATTTAGAATTTATGAAAtcatatttttatca
ttttgcattgtttattattgtaaattttgaaaCGTCGTAATATACACCAT
GTTCTATCTGTAAATTCCTAAATCTTTTTTCTGGAGTGTCCTCAATTTTT
CGCAATTTATAACTAACCTTATTTTCATCTTTCTAGCGCCTACCTTTAAA
GAGTTCAGCATccaaaaattatctttttgaaaattattagtAGGTTTGGG
TTTGAAATAGATTCAGGTCCATTTTCTCTGAAATTTACATACGTCACACC
TAATGTAAAACTG
Run BLAST on NCBI

transcript from alignment at scaffold_17:18156..19018

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050401 ID=TCONS_00050401|Name=TCONS_00050401|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at scaffold_17:18156..19018 (Clytia hemisphaerica)
CAGTTTTACATTAGGTGTGACGTATGTAAATTTCAGAGAAAATGGACCTG
AATCTATTTCAAACCCAAACCTactaataattttcaaaaagataattttt
ggATGCTGAACTCTTTAAAGGTAGGCGCTAGAAAGATGAAAATAAGGTTA
GTTATAAATTGCGAAAAATTGAGGACACTCCAGAAAAAAGATTTAGGAAT
TTACAGATAGAACATGGTGTATATTACGACGtttcaaaatttacaataat
aaacaatgcaaaatgataaaaatatgaTTTCATAAATTCTAAATAGAAAC
GTATAAAAAGTCATCTGATATAGCTTGCGGTTTCGTTTTGCATCGTTACA
AATAAAGAGAAGATTGTCGAGCAGAATAGGTTCATAACAATCGTTTAAAC
ATAAGAATTGCGAGTCTTAAACATTCCCAAAATGTaaaagaatttcttca
aaatccTGCTCTATTACAAAATATTCTCGGCACAAAATTTTGTAATTGGC
TTAGGATGGACCGGTCTTaaagatttaagaaaaatttaatttaaaataaC
TTAAATCAGGAGAAGAGTCATGAAGCTCATTTTAAGTCACATCAAAACAA
GCAGGAATGCTGATTTGACCTACTGGTGTTTAAAGCTGACAATAGAGAtg
cgaaaaatctttttttttaaatcaaagcaataaaacgttttagaaaaatt
tacaatttttataaaCGGGGGTTGTTTAAAATTTCCGGGTATGGAAATTT
TCCTGTTGACACCCATGAGTAAACAGAATCCAAATCAGGCggtttagaaa
aaaatacacACTTTTTCACAAAAGCGTTTTAGGCCTAAGAAAGTtcttaa
aaagttcttattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031912XLOC_031912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050401-exon-scaffold_17-1491911889:18156..19018TCONS_00050401-exon-scaffold_17-1491911889:18156..19018Clytia hemisphaericaexon
TCONS_00050401-exon-scaffold_17-1510915933:18156..19018TCONS_00050401-exon-scaffold_17-1510915933:18156..19018Clytia hemisphaericaexon
TCONS_00050401-exon-scaffold_17-1575043694:18156..19018TCONS_00050401-exon-scaffold_17-1575043694:18156..19018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:18156..19018 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108495	0.158699	0.0614216	0	0.292622	0.346851	0.697435	0.522344	0.457132	0.622855	0.219839	0.180642	0.288625	0.337208	0.338838	0.0991704	0.0407233	0.08348	0.28833	0.0603434	0.891639	0.460493	0.684188	0.339287	0.232972	0.311883	0.371919	0.238153	0.481682	0.613448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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