TCONS_00050393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050393
Unique NameTCONS_00050393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050393 ID=TCONS_00050393|Name=TCONS_00050393|organism=Clytia hemisphaerica|type=transcript|length=3150bp
acattagaccaagttacgatactgtgagtggtcctaaatccgacagccct
gcctaaatccaacCCCCCAAATAAAcagctatgaaaaaaaattctatgtt
tacaaacattccctctccaagttgaacaataaactatattgcaagaactc
tcgaaacaaaacatctaacaagatgactaaaatgtcaagatgtcaatgtG
ACaaaaaaagtgcgagttgtaaaaataattacctctattattctggatca
gttgctcgtGTTtgaaacgttaacaattttgtaataaaaaattatgtttt
gtataagaagcaattaatgtttttGTTCAATAGGtgcagtgtatcaaatc
tctcagtttagttgacactttggtatcttcattgcgtcacagcaaaatgt
ttgtttttattttagtttgtatctttgaaagaccccatcagatttaggca
gggctgtcggatttaagACCACTCACGGTAATTGTTGCATTTTTATGCCT
TAAAAAGTGTCATTGAATTCATAGAATGCCAGTTTTAATCaaattcaaga
agtatttctcaCGTCacttttaagccatttttggtGAAAATCCTGAAATT
TTGATCATCCAActtgcaaaagtttatgctcatgtcgaaatttcaaactt
atttttcaaattcaaaacctATATATATGCCACCATTTGAAAGCCCTTAT
CATAAGagaaaaaatgaggggtcatttacctggcaaaaagttttagtttt
tgagataTATAAATTTGAAGTTCCAATTTTACAGCTCCTTCGGTAACAAG
GCTCCCCAgctaaatttcgattttttggcACTCAGTTATGATTTTGCTCA
ACCAAATCTCGGCAAGGGTTTTACCTTGCGCGGCCTTGACAATCAGTCAA
CCAGCTTCAAACTTTTGTTTACTACGAATGAAGTGAAAAAGGTATTGAAA
AACAGTTTTCACatttgaaagaagaagcttTTGGCTTTCAAAAACATCCA
CACGTTTAGTTATAAcctttaaagtttcaaaaaaaaatctcatttgacCT
GAATCTAAAGGAAAACCCGAGCAAAGCGTTGATTAGGAAAAGCAGGAATC
ATGTGGCGAAAGCATGGTGAAAAATTATGCCGGTAGACGAAAGACCTCAT
TTTTggcatccttctttagagagaggaataataggaaggttggaatCACT
GATGGACTCCTCAACTGATTGTTTAGCAAAAAGAATAAGTTTCAATCAGT
AATTCTGATCTTCCTACCATTcatatctttaaagaaggattttgaaatta
gaagagggatgtcgacattagacaaaCCTACAGTAGTTTCTATGGTAAGA
TATTTAACCCCAAACTTTGTTTTACTAAAATTGTGAATTTGTTACCGTGT
GAGGCGCAACCCTTTGGTCGGCCTACTCATGGTAAATTTCCTTGAATTCA
CAAAAGTAAATGTCataaatttcatgaatttttgacctcacaaaagtttc
tgctcgcaaaagtttgtacgcctaaagttcCAAAAAATGTCAAGCAGGGA
AAAGGTAGCAAATGAGAAGGAaattatttcttaattttcagGTTGAGAAT
AAAACTTTTCCACATTTTGAAAGTGCAAGAAATAGAATTTCAAAGAGTTT
GTACATTTAAAAGCAGGGAGGAAATTTTCAAGTTGACAACGAAAGTTTTT
CTACATTTTAaatacaaatataaaaaaattacggTTGACCATTAAAACGT
TTTTAATAATATTtagaaaagaatataaaaaattctaagttGATGACAAA
TGTTTGCTACATTACAAAAACACATAGTCATAGACTTGCTGCAATGAATG
GAGAAGATGAGATGACATCAACAACATCACGTGACCTAGATGATGACGAA
GACAATAGTGATATTTGCAGTCTTCCAGAATGTGATTCTGATCTTCTTGA
GGTGAACCCTGACGCACCACACATTGAGCCCCAAAAGAATGAATCTGAGC
AGTCTGAAGGAGGGGAAAGAACCAGCATTGAAGGactgtcttttttgaaa
gtcaGTGCTGATGACCTAGNTttggatataagcatccctcaagcattttt
tcagccttattaagctttcgacctaagcatctctgagcctgttttcggat
ttttatatgcttattaaaaaaacatgtatattgaAACCATCTTTTGTTTT
GGAgacgaaaatattttgaaagcaaGTTCACCTTTATTATTACTTTACCA
GTGCAACCAATTCTCCCATCTTTAATTTCAGCATCTGTTACAGAGTTAAA
CAGCCAAGGAAACATATCAACTAATTCTATCGATAAAACGAATTCCGCCA
CAAGCAgaacaaAGATCTCCACAGATGGTTATTCATCACCGGGCAGTGGG
CAAATACAACTGTGGCAATTCTTATTGGAGCTGTTAACAGAGAAAAACAT
GAAAGACATAATTATGTGGGTGGGCGAAGAAGGTGCTTTCAAATTGGTTG
ACCCTGAACGAGTTGCTCAGTTATGGGGTGAACGCAAAAACAAACCCTCC
ATGAACTACGAAAAATTGAGTCGAGCCTTGAGGTATTACTACGATGGCGA
CTTGATACACAAAGTGTGTGGTAAGCGCTTCGTTTATCAGTTTGTTTGTG
ATCTGAAGATGTTGTTGGGGTACAGTGCTGCAGAACTTAGTCAATTGGTG
AGCGAGAGCAGCGATGATTGAAACTTATCTATACTTACATTACAGTATAG
ACACGACGATTGTTGTGAACGCTTATCATCTTTTAGAGAataaagaatat
ttcttaaccctttaagtgccacggtcatttttttaagtttaaaaaaaatc
gctagttcgaactttaaaggcttatatctccggatctagaaggagttaga
agctcgttggATAGCGTTGGATAGNGATAGCTTCATACCAATCCTTGGGA
TATTTTGCGATATTATCCATGTATCGTTGGTTAGCTTTCCATTCTTCCTC
CTAAATTCAtaaaacttgaattttttttatccagAAAATCCAACAATTtc
caaaatctatttttatttgaggcttactttaggcgtaccaactttcgcga
ttttcgcgaattttgacctttttcgcgaaagtaaatgtctttgaaaattc
Run BLAST on NCBI

protein sequence of TCONS_00050393-protein

>TCONS_00050393-protein ID=TCONS_00050393-protein|Name=TCONS_00050393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MTNVCYITKTHSHRLAAMNGEDEMTSTTSRDLDDDEDNSDICSLPECDSD
LLEVNPDAPHIEPQKNESEQSEGGERTSIEGLSFLKVSADDLXLDISIPQ
AFFQPY
Run BLAST on NCBI

transcript from alignment at scaffold_17:87885..99931-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050393 ID=TCONS_00050393|Name=TCONS_00050393|organism=Clytia hemisphaerica|type=transcript|length=12047bp|location=Sequence derived from alignment at scaffold_17:87885..99931- (Clytia hemisphaerica)
ACATTAGACCAAGTTACGATACTGTGAGTGGTCCTAAATCCGACAGCCCT
GCCTAAATCCAACCCCCCAAATAAACAGCTATGAAAAAAAATTCTATGTT
TACAAACATTCCCTCTCCAAGTTGAACAATAAACTATATTGCAAGAACTC
TCGAAACAAAACATCTAACAAGATGACTAAAATGTCAAGATGTCAATGTG
ACAAAAAAAGTGCGAGTTGTAAAAATAATTACCTCTATTATTCTGGATCA
GTTGCTCGTGTTTGAAACGTTAACAATTTTGTAATAAAAAATTATGTTTT
GTATAAGAAGCAATTAATGTTTTTGTTCAATAGGTGCAGTGTATCAAATC
TCTCAGTTTAGTTGACACTTTGGTATCTTCATTGCGTCACAGCAAAATGT
TTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCAGATTTAGGCA
GGGCTGTCGGATTTAAGACCACTCACGGTAATTGTTGCATTTTTATGCCT
TAAAAAGTGTCATTGAATTCATAGAATGCCAGTTTTAATCAAATTCAAGA
AGTATTTCTCACGTCACTTTTAAGCCATTTTTGGTGAAAATCCTGAAATT
TTGATCATCCAACTTGCAAAAGTTTATGCTCATGTCGAAATTTCAAACTT
ATTTTTCAAATTCAAAACCTATATATATGCCACCATTTGAAAGCCCTTAT
CATAAGAGAAAAAATGAGGGGTCATTTACCTGGCAAAAAGTTTTAGTTTT
TGAGATATATAAATTTGAAGTTCCAATTTTACAGCTCCTTCGGTAACAAG
GCTCCCCAGCTAAATTTCGATTTTTTGGCACTCAGTTATGATTTTGCTCA
ACCAAATCTCGGCAAGGGTTTTACCTTGCGCGGCCTTGACAATCAGTCAA
CCAGCTTCAAACTTTTGTTTACTACGAATGAAGTGAAAAAGGTATTGAAA
AACAGTTTTCACATTTGAAAGAAGAAGCTTTTGGCTTTCAAAAACATCCA
CACGTTTAGTTATAACCTTTAAAGTTTCAAAAAAAAATCTCATTTGACCT
GAATCTAAAGGAAAACCCGAGCAAAGCGTTGATTAGGAAAAGCAGGAATC
ATGTGGCGAAAGCATGGTGAAAAATTATGCCGGTAGACGAAAGACCTCAT
TTTTGGCATCCTTCTTTAGAGAGAGGAATAATAGGAAGGTTGGAATCACT
GATGGACTCCTCAACTGATTGTTTAGCAAAAAGAATAAGTTTCAATCAGT
AATTCTGATCTTCCTACCATTCATATCTTTAAAGAAGGATTTTGAAATTA
GAAGAGGGATGTCGACATTAGACAAACCTACAGTAGTTTCTATGGTAAGA
TATTTAACCCCAAACTTTGTTTTACTAAAATTGTGAATTTGTTACCGTGT
GAGGCGCAACCCTTTGGTCGGCCTACTCATGGTAAATTTCCTTGAATTCA
CAAAAGTAAATGTCATAAATTTCATGAATTTTTGACCTCACAAAAGTTTC
TGCTCGCAAAAGTTTGTACGCCTAAAGTTCCAAAAAATGTCAAGCAGGGA
AAAGGTAGCAAATGAGAAGGAAATTATTTCTTAATTTTCAGGTTGAGAAT
AAAACTTTTCCACATTTTGAAAGTGCAAGAAATAGAATTTCAAAGAGTTT
GTACATTTAAAAGCAGGGAGGAAATTTTCAAGTTGACAACGAAAGTTTTT
CTACATTTTAAATACAAATATAAAAAAATTACGGTTGACCATTAAAACGT
TTTTAATAATATTTAGAAAAGAATATAAAAAATTCTAAGTTGATGACAAA
TGTTTGCTACATTACAAAAACACATAGGTATGTGGAAATCAATTCAAGTG
GACGACAGGCATTCAATATACTTGAAAAGCATGTGAGGAAAGAAACTTTC
AAGTTGGTGACAATAAAAGTTTCCACATTTTAAACGTACTTAGAAGATGA
TATGCAGTTCACAATTATTTACCACATTTCATAAGCATAGGGAAATAAAT
TTTCCTAGTGGGTGATAAAATTTTTCCATATTTTATAATGCCATATATAT
TAAGTGTATTAATTTTGGTGTTAGTGCAGTCTAAATGTGCCAAAAGTCAT
TAACATGAGACTTTGCACAATTGTAGTTTAGGGGTCAAAAATGGATTTAA
ATCTCAGACCCAAAAAAATGGCACCTTTTGTGTATTTTACAGACCAGAAT
AGGTTCCCAGGCTAAAATTAATTTTTTTTGTTCCAAAGTATGTCATGTTA
CATACTGTTGGAAAGAATTTTTCATCCTTGTTTAGAAAAACCCATATCTG
AAAATGAAGCCAAAAAAAGTTATTGCAGAACGTTGTTTGCAAAATTATAT
ATTATTAGGGTTAGTAATAATAGTGATAAATTTAATTTTTGTGGGTATTT
AATTTGGCGAATGGCAGATTTTGTATTATTTGGCAGATGGGGAAATTTGT
AAATCAAAAGATATTTGGTGTTACTTGATTTTTGTTAAATTTGGGAGGTA
TTTAATTCTGTTTAATTTGGTAGGTAGTCAATTTCAAAATTTTTGGCTGG
TAATCAATTTGGCGGATTTTACAAATCTCCCAAATTTAGTACGCCAAAAT
TAATATAATACACTTGAGGCAGCCATTGAAAAATTGTTCTGTTCGCGTCA
CAGCATTTGTTAAAAATACATACATGCGGGCTGGCGAACGGGTGGTCGGT
CAGTAATTGGAAAGATTTCCAGGTTTTTAAAATCGTGTCAGAAAGCCAAT
TTCTTCTTCTGACAGGGGGTGGGTGTTGTATCTGTTGTGTTCTTGCAAAG
TATAGCTAAAATAACGCTGTTCTTCCTCCCTGTAGTTTGAATCTAATTTA
CCTTATTACATGAAAAAAAATATGGAAGTATTTAACAGCCTTGAAATTAA
CACGCAAAAAATTAACACAAATTTTATTTGCTTTTTCAAGGACACCACGG
CTGGTTTTAATTAAGGGGGTTTTTATTAACACCAAATTTTTCAATTCGTG
TTAAATACTTCCATATTTATTTTCATGTAATAAGGTATTTGTTTTGTTTA
TGTGTTTGTCTGTTCAGCGGAGAAGAGCTAGAGAAAAAAGCTATATGCTA
AAAGCACAATTTAATTTTTCCAGATATTTTACAGCTCTCCGTCCGCATCA
GAAAATCAGCAGAAAATATGCTGCGACGGGTGACGCAAACAGAACTATTT
TTCGACGTCAACCTAAGCAGCAGCAGAAAGATCAAAATAACGTTCCTGCA
GTTTCAAATTTTATTCATCATTGCTTATGTGTTCGTTTGTTCTGCAGAGA
AAAGACAATACGTCAAAAGAACAATTTGCTTTTTCCATATTTTTTCCTGC
TCCTCCAGACAAAAAAAATCAGTGGAAAATATTATAATGATGTCGCTCGG
GTAACACAAACAGAACAATTTTTTTGGATGAAGGACCAGAATTCCTTAGC
GAATTGCTTCTATGTCTTTTCTATTGTAAACTGTTCATAATAGAAATCCA
TCTCTGTACCCTGGAGTATTCTGTTTTTATAAGAAAGATGAAGCTGAATG
AAGCAGACAAAGTATTCATGCAGTACGTCTGCACATTTTTTGCTACGATG
TTCCTGCTTTTCATCAAAATAATATTTGCAGAAGATACCTATAAAAGCTT
CCTTGTTAATTAAATCTAATTTTATCAGCGTCTGTTATGAATTTGAGAAC
CTTTTATGATCCCTCTTTAAAGATTTCGGATGTAAATATAATTTGGACTT
TGTCAGTTTTAGATTATTAGGCTGCTGGCATCCACTAACGGATTCGTGCT
CCTTATAGAGGATGCTTAATAAGAAATATTTCCTTTCTCCAGAGATTTGC
CGCCTTTAGCCGATATACGGCCAAAGACACTTTTAGCTGGCTAGTGTCTA
CAAATATAACATTACGTAATGTTTAAATTTTCTGTGAGGCACTAAATCAT
AGATTGGAAAATATATTTGGATCTCGAAAAAAAAGTAGGTGGAAGGATGT
TTGCTTCTTTTTCTTCCTCCTTTCTCGTTTGATGTGGAGATTTTGTAAAA
GATTAGAAATTAAATTTATTGAATTTAAGTGCCCTGATGTATCTTTTGTG
TGCACCAACAAAATTTTGCTTCAGAAAACTACATATTGATGCTTGAATTT
GAACTTGTATGGGGTTGTATGAGTGTATAATTCTTTACCACACTGTACAC
TGGATTCGTTGATCACTTTGGCTCCAGATAATTATTTTGTCAGTTCTACA
GATATTGTTGCAGATTATTTCAAGGTATTTTTGTTATGTATATACAGTAC
ATTTTGGGGGTTATGTTGAATATTTATGAAATTACTTTTGTATGGTTCTA
CAAAAGGGAGTGTTGTTATTCCCTTGTTAAATGTTGAAACAAACGAACTT
TTCTCCAGCTTTGGCATTCACTTTTCGATACTGTGTGGCCTTTGTGTTTA
TCTTCAATTCTTTTGAAGAGATTGGAGTGTTTTTTGGTTGTTTTCTTTCA
CTTTTTTGTTGATATTTGTATTTTTGAGTTTCGACCAAAGAGCTGAAGGA
AAAGTTTTGATAAATTTACAGACCAGATATCTTATAAAAGCGAAAGTCAA
AAATAAATTTACAGACTGTTTTTTATCTTTCTTTCTGTTTTCTTTTTCTG
GTCTGGGATTCGAATTTCGAATGTAAACATTCTATTGAAAACGTTCAAAA
TGATCGTTTTTGCGCGCACATCAATGTCAATCAAATTATTAACTCGCCAA
GATTCTGTAAAGTACATCGAATTAAAAAAAACCAAACCGGGAAGCGGTTG
GTAGATCATTAAGCAGACCTATACTACCTGGGGTTTTGTAGAGGTCTACG
ATTCTGACCACAAGATTATGGGATTTCGAGTATGGGCCGATTTGACTTTC
GTTTTCAGTGGTTTCATTTTCGATTTCAAGACAACGTCTTAGCGAAAGGA
CGAAACACATGCCTGCGTGTAGATTTGTCTGTAAACAAACCCGATATCTA
CGGCTAATTTCAAAATAAACGTGAGATACACTCTGGTACAGAGTACGCGT
AGATATATGGAGCTTCTATTGTTGGACCTACCCCGGTGGAGGTCCTATAA
ATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCG
AATGTGACGGAGCCCGATTTTCAAAAAAAAAATTTTTGGGCAAATTTGGG
CAAAAAAACGGCTAAAAAACGGGTTTTTTGGACATTGTGAAAAATTAGGT
CGTTAATTTTTTCTATTTTTTTGCATGAAAGTAGGGTACTATCGTAGGTA
AAAGATGGCTTAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTCAAAAAA
CGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCT
TAGTCAAATTACTCAATTTTTTTTATGAGATAGATGTTTTTTTATTGCTC
ATGAGGGCTTACTTTTGAAGAATATGTGTGTTTAGACATGAACCTTTGGT
TGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTTTTTACA
NNNNNNNNNNNNNCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTC
TTTCATTCTTTACGATTTTTTGAACAAAGATGCATAACTATAAACCCTCG
AATGTGGCGGAGCTCAATTTTTGGAGAAAAAAATTTTGGGGTAAATTTCA
GCTAAAAAACGGCTAAAAAAAGGGTTTTTTGGACTTGTTATTTTCTGACT
TTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAGACTTTTGTAAAAAA
AGATTTTTTCAAAAAACGCATATTTATTTATAAGAATCACTATTAATAAG
CATACAGCAATGTTCTTAAAATTACTGAATTTTTTGATGAGATATGTTTT
TTTGCTTTCGAAGTCTTGAATATCAAAGAATATTTCAAGAGCATGAAATT
TTGGTTTCTAAACGTGTTTTTTATAAGAAACAAACGACTAATTTTAATAG
ATCGTCACTATTTGTGTTCTGAATGATTGTTTAATGATCACGCTTATGTA
GATATAGCCTGGGAATCCATGCTATGATTTCTTCTTTGATAAACTGATGG
CGAAATGTATAGCATGGTATAGGCTGAGAGTTTGAATTTCTCAGATCCTA
ATAACGGTTGAAAACATAGCCAATCAAATTTTGTTATTCTTTTACTGGTC
ACACTTTCTTAGAGAAAGCGCAACTTCCGAAATTTGGTTTTTGTCTTAGT
AAGTGAGGACAGCGCTAAATTCAAATTTCCCACTGTAAAAAATGTGAGTC
CAATATTGGACTCACAGCTCGAACCCGTCTTGTGTACATCAAATTATTAA
AAAACACACGACGGGTCTCCTGTCTAATGTAGATATCAATTATATATGTG
TTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTATTATTC
TATGCTTTGCTTAGTCATAGACTTGCTGCAATGAATGGAGAAGATGAGAT
GACATCAACAACATCACGTGACCTAGATGATGACGAAGACAATAGTGATA
TTTGCAGTCTTCCAGAATGTGATTCTGATCTTCTTGGTTAGTTTATTTTT
CAGTTTATTTTTCCTAAATCAGTTTTTTGTTACTCAAGGGATCAAATGAA
TGCTATTTTTTTTGCACCATTTTCTACATAAATTCGAAACATTTTTTGAA
CCCTTTGTAAAGTATTTTCTCGATGAGATTGATCCACATGTCCACTGATC
TTATAAGATTTCGGCATGAATTAGAAGCATTCTTTTGAAGCCTTTGTAAA
GTATTTTCTTAGATATTGAATAAATCCCTTCATTATTAGAGGTGAACCCT
GACGCACCACACATTGAGCCCCAAAAGAATGAATCTGAGCAGTCTGAAGG
AGGGGAAAGAACCAGCATTGAAGGACTGTCTTTTTTGAAAGTCAGTGCTG
ATGACCTAGNTTTGGATATAAGCATCCCTCAAGCATTTTTTCAGCCTTAT
TAAGCTTTCGACCTAAGCATCTCTGAGCCTGTTTTCGGATTTTTATATGC
TTATTAAAAAAACATGTATATTGAAACCATCTTTTGTTTTGGAGACGAAA
ATATTTTGAAAGCAAGTTCACCTTTATTATTACTTTACCAGTGCAACCAA
TTCTCCCATCTTTAATTTCAGCATCTGTTACAGAGTTAAACAGCCAAGGA
AACATATCAACTAATTCTATCGATAAAACGAATTCCGCCACAAGCAGTAC
GTATCNATGTCATTCTGGTCGATCAAGTGAATGAAGAAGCCATCTCCAAC
GATTCAACGAAGAAGAGAGTAATGAAAAACGATGAAGGAGGAGGAGGAAC
GGAAAGAGAGAAAGAAGCCTCGAAGGAAAGAGTGAGCACACTCAAAGAGG
AGACACCACCAGCCGCCAAGAAAGCTTGTTTGAATGAGAGAGGAAGTACC
CCTTTCATTTTGATGCAAGAAATGTTACGTGGTGAAACTGATCTCAAACT
ACCACCAGGTGATTTTATTTCTTCAAATTGCCCAATTAAAAGGTTTTGTA
CAAATATTTTTCACAAAAGTTTGCAAGCCTTTTTTTGTACGAAATAGTAC
GAAATTGATATTAACTCGCATATGCACCGATAGAGTTAGTTGATTTTGGT
TCCGTTTCTTNAAGGATTTGGTGAAAACTGTTTTCGGCGAGCCTAGATAT
TCGAAATGTTTCACTTTTGGCCAGAACTCATTTAGACATGTGGGTGATTT
AAAAAAATATGCATAGATTTAGCCCAGCTTTAACCCACCAATATCACGGT
TGACTTCTGCNTATGCTGGGAACTCATTTTTAGTGGGACTTTAACCCACT
TGCACACTTTGAATCTCGAATACGTCAATTCGATTGGTTCTTTGTCGTTT
TATTTAAATTAGTATTATAACATTAACCCATAATTCACAAGGTCCATTAA
TCAATCTTATTTGTTCTTTATTTAACAAAGATACGGAGGGAATGCTGTTA
ACAAAATAAAGTTTGTATTGATTTCTAGATCCAAAGCAATGGAGTGTCGA
GGAAGTTTCGAAATTCATGGAATGGTTGGTCAGTCAGCTTCGTGTAAGCA
AACCAACCACGCCGTACCAAAAATTCCACATTGATGGAAAATTATTGTAT
AAAATTCGTAAAAGAAGTCTTCAGCGTTTCTTTACCGATAGTGCGGTTGA
CATCCTTTGGATACACGTGNGACCTGACAAAAGTTTTTTGACTGTCTTCT
GAAATTTTTAAACGAAGAAACGATGTAAAAATTACTGCTTTCAGGATAAT
TTTTCAAGAAACGCGGAATTTTTTCTTTGTTTCAAATGCAAAAATGTCTT
TTGAATCAGAAAATAGGGCCAAATTCCAGTTCAAAATCGAATTTTGAATG
CAAATTTAGACCTGCAAATCCCTTTTTAAACACACACGCACTAGTTATTT
TGTATGTTTTCTGGTGATAGAATTTCAAAAAGAACCTCAATTTGAGGTGC
TCATCAACTTTCCCTTTGAGGTTTTTTCTACTCTTGGGCAAAAATTGCTT
CAGTAAAAACAAAAATAACTTTTATTTTTAGGAACAAAGATCTCCACAGA
TGGTTATTGTAAGTTTCCTTTGTTCTTTTATTTATATAACACCCTGTTTT
GTTCGTCTTTTATCTTTAGAGTCTTTAAATTGTAATTTAATTTTTGTAAG
CTATTTACAGTGATTTAACACACTTTAGAAATTGTTACTCATAATTTAGG
GGTTGAAGCAAGCTCGTTGATTTTTATTGGTTGAGCATTAGGTTGACGTT
GCTCTTACCCTTTCCCCCATTTTTGTGTTTTCTTTTTTTCTTTGATTGAT
CATATGAAAATCAAGTGAAAAATTTATGAGAAAGAAGAAAAACCACAACG
CTTTCATTCATAACACGTTTGGAAGTTTTCTTTTTTAAGTAAATGTTTTT
AAAGTTTATCAGAGATTTTTCAACGATTTATCTCCTTTACGCCAAAATAG
TCGATTTATGTCCATAGATATAAAACCCGAAGGGCTAGATGTCGCACTTT
AAGCCATCACAGGCAAAAAAAGTGAATATCGCAAAAAATATTGCTGCTAA
CTGTTTTCGAAACCCGCGAAGCTTCTGATTGGGCAAGCGCTGAAATTCTA
TTGTAATGTCACGTGACTTTTGGCACACTTTTCAGCACTCCATCTAGCCC
TTCGGGCTTTATAAATCCATGTTTATGCCCCTTAAAATCAAGTGGTCAAG
AGCTANTTTGTTTCAAATGCCAAAATGTCTTTTGAATCAGAAAATAGGGC
CAAATTCCAGTTCAAAATCGAATTTTGAATGCAAATTTAGACCTGCAAAT
CCCTTTTTAAACACACACGCACTAGTTATTTTGTATGTTTTCTGGTGATA
GAATTTCAAAAAGAACCTCAATTTGAGGTGCTCATCAACTTTCCCTTTGA
GGTTTTTTCTACTCTTGGGCAAAAATTGCTTCAGTAAAAACAAAAATAAC
TTTTATTTTTAGGAGCAAAGATCTCCACAGATGGTTATTGTAAGTTTCCT
TTGTTCTTTTATTTATATAACACCCTGTTTTGTTCGTCTTTTATCTTTAG
AGTCTTTAAATTGTAATTTAATTTTTGTAAGCTATTTACAGTGATTTAAC
ACGCTTTAGAAATTGTTACTCATAGTTTAGGGGTTGAAGCAAGCTCGTTG
ATTTTTATTGGTTGAGCATTAGGTTGACGTTGCTCTTACCCTTTCCCCCA
TTTTTGTGTTTTCTTTTTTTCTTTGATTGATCATATGAAAATCAAGTGAA
AAATTTATGAGAAAGAAGAAAAACCACAACGCTTTCATTCATAACACGTT
TGGAAGTTTTCTTTTTTAAGTAAATGTTTTTAAAGTTTATCAGAGATTTT
TCAACGATTTATCTCCTTTACGCCAAAATAGTCGATTTATGTCCATAGAT
ATAAAACCCGAAGGGCTAGATGTCGCACTTTAAGCCATCACAGGCAAAAA
AAGTGAATATCGCAAAAAATATTGCTGCTAACTGTTTTCGAAACCCGCGA
AGCTTCTGATTGGGCAAGCGCTGAAATTCTATTGTAATGTCACGTGACTT
TTGGCACACTTTTCAGCACTCCATCTAGCCCTTCGGGCTTTATAAATCCA
TGTTTATGCCCCTTAAAATCAAGTGGTCAAGAGCTATGGCCAAAAGTCTT
GGACTTTGTCTAGAATTTCGACCTGTTATTTTGACGTGTATGCCGGGTGA
CCCACGAAAAAGTATTATGGGTTGATGACAAATGTGCCCGTAATTTTACG
ACATTAATTTTTCATTGTGATGATGAAGTGCAAAATTTGGTGTAGGGTAT
AATTCAAATTCGGTTTAGTGGTTCAAAATATTTTAAGGTATTAAATTAAC
GCTAAACAATAGAGAATAGCTCGTTTTTTAATATTTGTGTAATTTTTATG
ACGCGATTAATGATCGAAGCTAATTTATAACCATATAGATGTAACAGAAT
CATTCAATGAATTAGCCGTTTTCGTAACTGAGAAACTACAGTTGCGTAAT
AATATTTATTTTATAGCAAGTCTTCACTTGTGGCGAGGCCATCAAAGCGC
AACCAATACACCTTTTCGACCGTAGCCGCCAATTGCTGCGCGGGCATTTT
TTTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTTTGCACCTA
TAGACAATAGAAAAATGTGTCAAAAAAAGGATTGGATCGAGTTTAGTGGG
ATAATCAAATAATTAAGTGGCACGCGCCTGACCGCGCGACTACGGTCGAA
AAGGTGTATTTGCGACCGTTATTCATTGATTGATTGTAGAAGTGCTTATA
TTTACCCATCGAAATTTTATAGAGAGTTAACTCGGCTCTGGCCACGAGCT
AGTATATAGTGGAAACTTTACTTTAACTCCAACCTCTATAACTCGAATGT
CTCTAACTACTTGTCTTCTCAGTTAAGAGTGCGTTATAAACCTCACTCCA
CGCTCCCCGTCCGCGGGTTCGAAAGAAGTTTTCCATACAACCGAATAATG
TTTTGTTATGAGAAACTTTTTTCAATAAAAACTGCACTCTGTGGAGCACC
TACTATGAAACTTTCATCTATCATTTTTAGCATCACCGGGCAGTGGGCAA
ATACAACTGTGGCAATTCTTATTGGAGCTGTTAACAGAGAAAAACATGAA
AGACATAATTATGTGGGTGGGCGAAGAAGGTGCTTTCAAATTGGTTGACC
CTGAACGAGTTGCTCAGTTATGGGGTGAACGCAAAAACAAACCCTCCATG
AACTACGAAAAATTGAGTCGAGCCTTGAGGTATTACTACGATGGCGACTT
GATACACAAAGTGTGTGGTAAGCGCTTCGTTTATCAGTTTGTTTGTGATC
TGAAGATGTTGTTGGGGTACAGTGCTGCAGAACTTAGTCAATTGGTGAGC
GAGAGCAGCGATGATTGAAACTTATCTATACTTACATTACAGTATAGACA
CGACGATTGTTGTGAACGCTTATCATCTTTTAGAGAATAAAGAATATTTC
TTAACCCTTTAAGTGCCACGGTCATTTTTTTAAGTTTAAAAAAAATCGCT
AGTTCGAACTTTAAAGGCTTATATCTCCGGATCTAGAAGGAGTTAGAAGC
TCGTTGGATAGCGTTGGATAGNGATAGCTTCATACCAATCCTTGGGATAT
TTTGCGATATTATCCATGTATCGTTGGTTAGCTTTCCATTCTTCCTCCTA
AATTCATAAAACTTGAATTTTTTTTATCCAGAAAATCCAACAATTTCCAA
AATCTATTTTTATTTGAGGCTTACTTTAGGCGTACCAACTTTCGCGATTT
TCGCGAATTTTGACCTTTTTCGCGAAAGTAAATGTCTTTGAAAATTC

Coding sequence (CDS) from alignment at scaffold_17:87885..99931-

>TCONS_00050393 ID=TCONS_00050393|Name=TCONS_00050393|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_17:87885..99931- (Clytia hemisphaerica)
AGGTGAACCCTGACGCACCACACATTGAGCCCCAAAAGAATGAATCTGAG
CAGTCTGAAGGAGGGGAAAGAACCAGCATTGAAGGACTGTCTTTTTTGAA
AGTCAGTGCTGATGACCTAGNTTTGGATATAAGCATCCCTCAAGCATTTT
TTCAGCCTTATTAATCATAGACTTGCTGCAATGAATGGAGAAGATGAGAT
GACATCAACAACATCACGTGACCTAGATGATGACGAAGACAATAGTGATA
TTTGCAGTCTTCCAGAATGTGATTCTGATCTTCTTGATGACAAATGTTTG
CTACATTACAAAAACACATAGAGGTGAACCCTGACGCACCACACATTGAG
CCCCAAAAGAATGAATCTGAGCAGTCTGAAGGAGGGGAAAGAACCAGCAT
TGAAGGACTGTCTTTTTTGAAAGTCAGTGCTGATGACCTAGNTTTGGATA
TAAGCATCCCTCAAGCATTTTTTCAGCCTTATTAATCATAGACTTGCTGC
AATGAATGGAGAAGATGAGATGACATCAACAACATCACGTGACCTAGATG
ATGACGAAGACAATAGTGATATTTGCAGTCTTCCAGAATGTGATTCTGAT
CTTCTTGATGACAAATGTTTGCTACATTACAAAAACACATAGAGGTGAAC
CCTGACGCACCACACATTGAGCCCCAAAAGAATGAATCTGAGCAGTCTGA
AGGAGGGGAAAGAACCAGCATTGAAGGACTGTCTTTTTTGAAAGTCAGTG
CTGATGACCTAGNTTTGGATATAAGCATCCCTCAAGCATTTTTTCAGCCT
TATTAATCATAGACTTGCTGCAATGAATGGAGAAGATGAGATGACATCAA
CAACATCACGTGACCTAGATGATGACGAAGACAATAGTGATATTTGCAGT
CTTCCAGAATGTGATTCTGATCTTCTTGATGACAAATGTTTGCTACATTA
CAAAAACACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031908XLOC_031908Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050393-proteinTCONS_00050393-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050393-exon-scaffold_17-1575043694:98105..99931TCONS_00050393-exon-scaffold_17-1575043694:98105..99931Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1575043694:93196..93317TCONS_00050393-exon-scaffold_17-1575043694:93196..93317Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1575043694:92536..92942TCONS_00050393-exon-scaffold_17-1575043694:92536..92942Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1575043694:91174..91200TCONS_00050393-exon-scaffold_17-1575043694:91174..91200Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1575043694:87885..88651TCONS_00050393-exon-scaffold_17-1575043694:87885..88651Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1510915933:98105..99931TCONS_00050393-exon-scaffold_17-1510915933:98105..99931Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1510915933:93196..93317TCONS_00050393-exon-scaffold_17-1510915933:93196..93317Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1510915933:92536..92942TCONS_00050393-exon-scaffold_17-1510915933:92536..92942Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1510915933:91174..91200TCONS_00050393-exon-scaffold_17-1510915933:91174..91200Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1510915933:87885..88651TCONS_00050393-exon-scaffold_17-1510915933:87885..88651Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1491911889:98105..99931TCONS_00050393-exon-scaffold_17-1491911889:98105..99931Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1491911889:93196..93317TCONS_00050393-exon-scaffold_17-1491911889:93196..93317Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1491911889:92536..92942TCONS_00050393-exon-scaffold_17-1491911889:92536..92942Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1491911889:91174..91200TCONS_00050393-exon-scaffold_17-1491911889:91174..91200Clytia hemisphaericaexon
TCONS_00050393-exon-scaffold_17-1491911889:87885..88651TCONS_00050393-exon-scaffold_17-1491911889:87885..88651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:87885..99931 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28081	0.896125	1.48189	1.36893	2.91061	2.2879	2.31974	2.60645	2.13555	2.19164	2.63928	2.63393	2.29678	2.78348	1.74966	1.40638	1.7259	1.71405	1.48486	2.07175	2.37235	2.09916	1.05776	1.48934	2.04415	2.60085	2.41833	1.2816	2.73457	1.96985
Blast
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BLAST of TCONS_00050393 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.463e-51
Identity = 103/178 (57.87%), Postives = 124/178 (69.66%), Query Frame = 1 
Query: 2206 RKYF----ESKFTFIITL--PVQPILPSLISASVTELNSQGNISTNSIDKTNSATSRTKISTDGYSSPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 2706
            RKY     E +   I+T+  PVQ I  S+ SA+ T +        NS  K        +IS +  SSPG+     GQIQLWQFLLELLT+K+ +D I WVG+EG FKL  PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct:  248 RKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKV-----INSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
BLAST of TCONS_00050393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABPA1.463e-5157.87GA-binding protein alpha chain OS=Homo sapiens GN=... [more]
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