TCONS_00050410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050410
Unique NameTCONS_00050410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050410 ID=TCONS_00050410|Name=TCONS_00050410|organism=Clytia hemisphaerica|type=transcript|length=301bp
GCGATTTTTACCAAcgaagaggaaaatttcgggGTTTTATGTGAAAGTCT
GGTAAGGCGGCCACCGTACCTGCTGTCGTGCCTGGGTCACTTCGCCTTAT
AAGACACACGTACCCAACCAAGAGTAAAAAATGATCGTCATTACAACATT
TGCTTGcgatattttaatgtttttaattatttagcTTAAGAAATTGTATC
TGAAATATTAATAAACTGTAGTATAGATTGTAGATTTTATGGAATTTCGT
TTGTACATAacttattttattgtttttgataaTAAGAAATCGTAAAATGA
A
Run BLAST on NCBI

transcript from alignment at scaffold_170:27471..27771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050410 ID=TCONS_00050410|Name=TCONS_00050410|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_170:27471..27771 (Clytia hemisphaerica)
TTCATTTTACGATTTCTTAttatcaaaaacaataaaataagtTATGTACA
AACGAAATTCCATAAAATCTACAATCTATACTACAGTTTATTAATATTTC
AGATACAATTTCTTAAgctaaataattaaaaacattaaaatatcgCAAGC
AAATGTTGTAATGACGATCATTTTTTACTCTTGGTTGGGTACGTGTGTCT
TATAAGGCGAAGTGACCCAGGCACGACAGCAGGTACGGTGGCCGCCTTAC
CAGACTTTCACATAAAACcccgaaattttcctcttcgTTGGTAAAAATCG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031920XLOC_031920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050410-exon-scaffold_170-1491911889:27471..27771TCONS_00050410-exon-scaffold_170-1491911889:27471..27771Clytia hemisphaericaexon
TCONS_00050410-exon-scaffold_170-1510915933:27471..27771TCONS_00050410-exon-scaffold_170-1510915933:27471..27771Clytia hemisphaericaexon
TCONS_00050410-exon-scaffold_170-1575043694:27471..27771TCONS_00050410-exon-scaffold_170-1575043694:27471..27771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_170supercontigscaffold_170:27471..27771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.436085	0	0.519395	0.410433	0.49517	0	0.324557	0	0	1.53904	2.81765	3.19218	3.7179	5.86747	2.31304	3.25984	0.818843	0	2.60669	1.63472	2.20802	2.81038	0	0.369054	1.05623	0	1.70994	3.91986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top