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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050424 ID=TCONS_00050424|Name=TCONS_00050424|organism=Clytia hemisphaerica|type=transcript|length=1522bp
TCCTCGAAATCTCACCAGCCATCAATCCTGGATCAACAAAACCTCATTAT
ACAAACACGTCCAAACTCCTCGACATTCCAAGGGGGTAGAGTGCATTCTC
GACATATTCAAAAATCAGATCAACAtttccctctcaaaaatacTGGTTTA
AATCCAAATCTAAATACTGCTCaaatgcaaaaaagtgaaattcgtTATGG
GCCAAGATTCCATCGAGGGATCAGCCAGGTTGGACCTCCAAGGCTGGCAT
TGAACCAAGTTAAGCAANCATTCGATATGGAGAAATTCCCAAGAAGTAAA
GAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAATCT
TTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAGACTCTAT
GTAGAGATAAAATGAAGGAGTTGGTAGATCCAAATATGATGTCAAAGCGC
ATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTA
TTGTAATAAGCATGACATTGACATTACTTTGTTCACTGAAAATAGTATGA
ACAATAAACGAAAAATTCCAAAGGAACGAATGGAAAAACTGCGAAGcgct
aaaaagaaaaatcagaaattcaATACCAATAGAAAAATGAAACCTTCTCT
TTCAAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATCAAAAT
CGAGATCGGACCAAGAAGCTGTTACAACTTCGCCATCAACCTCTATTTTA
GCGAATTACTCTGAAAGACGTTTCTGGAGTACTGACAGATCTCAAATGAA
GTTAGAATCAAAAGATTTGACTTCAAATCCACCAAAAGAAAGATTTGACG
AAAATTTTGTGATACCTAAATCACAAGCTTACTCCTCGAAATCTCACCAG
CCATCAATCCTGGATCAACAAAACCTCATTATACAAGCACGTCCAAACTC
CTCGACATTCCAAGGGGGTAGAGTGCATTCTCGACATATTCAGAAATCAA
ATCAACAtttccctctcaaaaatacTGGTTTAAATCCAAATCTAAATACC
GCTAaaatgcaaaaaagtgaaattcgtTATGGGCCAAGATTCCATCGAGG
GATCAGCCAGGTTGGACCTCCAAAGCTGGCATTGAACCAAGTTAAGCAAT
CATTGGCTGCTGTGAGTCATCAACCAATTAGATTATTTCCTGCAGCTCCT
AGATTCGCTTCCAATCCGAAATGTGGTCTTGTATCTGTGTTTCCAAGAAT
GGCTACTCGTCCAAGGCTTTCACTTGTTCCAAGAGCGGGGTCTAGAGATT
TACATCCCACAGGATTCGAAGGTGTTGGCATTTCACGTCCATTTTTCTCA
CCACGGTTTCAACAAGTCCGATTGCCTACTATTCACAGGTATCCACACCA
TCAAGTCCAGCGTGCCGACAGTTTCCCAAGAGAGAGATGGGATAAGTACA
GTTTCAatcaatattgaaaattgacggATGTGTTCATTGGTCAAATCGAC
ACAAGTTAAAATTCGTTTTTAG Run BLAST on NCBI protein sequence of TCONS_00050424-protein >TCONS_00050424-protein ID=TCONS_00050424-protein|Name=TCONS_00050424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
SSKSHQPSILDQQNLIIQTRPNSSTFQGGRVHSRHIQKSDQHFPLKNTGL
NPNLNTAQMQKSEIRYGPRFHRGISQVGPPRLALNQVKQXFDMEKFPRSK
EALAFMTMYDSRETRNLLPKKFLALCGIKRETLCRDKMKELVDPNMMSKR
MVRCESYKFYNELIEDYCNKHDIDITLFTENSMNNKRKIPKERMEKLRSA
KKKNQKFNTNRKMKPSLSKSSEESPKRYWNQSKSRSDQEAVTTSPSTSIL
ANYSERRFWSTDRSQMKLESKDLTSNPPKERFDENFVIPKSQAYSSKSHQ
PSILDQQNLIIQARPNSSTFQGGRVHSRHIQKSNQHFPLKNTGLNPNLNT
AKMQKSEIRYGPRFHRGISQVGPPKLALNQVKQSLAAVSHQPIRLFPAAP
RFASNPKCGLVSVFPRMATRPRLSLVPRAGSRDLHPTGFEGVGISRPFFS
PRFQQVRLPTIHRYPHHQVQRADSFPRERWDKYSFNQY Run BLAST on NCBI transcript from alignment at scaffold_171:7503..9366- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050424 ID=TCONS_00050424|Name=TCONS_00050424|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at scaffold_171:7503..9366- (Clytia hemisphaerica)
TCCTCGAAATCTCACCAGCCATCAATCCTGGATCAACAAAACCTCATTAT
ACAAACACGTCCAAACTCCTCGACATTCCAAGGGGGTAGAGTGCATTCTC
GACATATTCAAAAATCAGATCAACATTTCCCTCTCAAAAATACTGGTTTA
AATCCAAATCTAAATACTGCTCAAATGCAAAAAAGTGAAATTCGTTATGG
GCCAAGATTCCATCGAGGGATCAGCCAGGTTGGACCTCCAAGGCTGGCAT
TGAACCAAGTTAAGCAANCATTCGATATGGAGAAATTCCCAAGAAGTAAA
GAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAATCT
TTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAGACTCTAT
GTAGAGATAAAATGAAGGAGTTGGTAGATCCAAATATGATGTCAAAGCGC
GTAAGAATTTATTTTAAAATCTTGTTCATGACAACAAAATTTAAAATAAT
ATGTGAGCTATGAAGGCTATTGTTTTTAACAAGTTCTAAGGGAGGAAGTA
CAAGTTGAACTAACGATGAGAGGTAGTGAATTTTTACTGAGGCTCAGCTT
TAATATACTTACTCTAATTCATTTATTTTAACTTGAAAGGAACTTAAAAT
CAACATTTTCTTATCCATTTCTGAAAGATGAGATTGTGAACTGTTTAATT
TATTGTAAGCTTTGGCCCAATATTAAGCTTCATGTTGTCATGAAATTGTT
CATATGAAAAACGGTTGTATTGTTCTCTTTTGATAACTTCAGATGGTCAG
ATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTATTGTAATA
AGCATGACATTGACATTACTTTGTTCACTGAAAATAGTATGAACAATAAA
CGAAAAATTCCAAAGGAACGAATGGAAAAACTGCGAAGCGCTAAAAAGAA
AAATCAGAAATTCAATACCAATAGAAAAATGAAACCTTCTCTTTCAAAGT
CTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATCAAAATCGAGATCG
GACCAAGAAGCTGTTACAACTTCGCCATCAACCTCTATTTTAGCGAATTA
CTCTGAAAGACGTTTCTGGAGTACTGACAGATCTCAAATGAAGTTAGAAT
CAAAAGATTTGACTTCAAATCCACCAAAAGAAAGATTTGACGAAAATTTT
GTGATACCTAAATCACAAGCTTACTCCTCGAAATCTCACCAGCCATCAAT
CCTGGATCAACAAAACCTCATTATACAAGCACGTCCAAACTCCTCGACAT
TCCAAGGGGGTAGAGTGCATTCTCGACATATTCAGAAATCAAATCAACAT
TTCCCTCTCAAAAATACTGGTTTAAATCCAAATCTAAATACCGCTAAAAT
GCAAAAAAGTGAAATTCGTTATGGGCCAAGATTCCATCGAGGGATCAGCC
AGGTTGGACCTCCAAAGCTGGCATTGAACCAAGTTAAGCAATCATTGGCT
GCTGTGAGTCATCAACCAATTAGATTATTTCCTGCAGCTCCTAGATTCGC
TTCCAATCCGAAATGTGGTCTTGTATCTGTGTTTCCAAGAATGGCTACTC
GTCCAAGGCTTTCACTTGTTCCAAGAGCGGGGTCTAGAGATTTACATCCC
ACAGGATTCGAAGGTGTTGGCATTTCACGTCCATTTTTCTCACCACGGTT
TCAACAAGTCCGATTGCCTACTATTCACAGGTATCCACACCATCAAGTCC
AGCGTGCCGACAGTTTCCCAAGAGAGAGATGGGATAAGTACAGTTTCAAT
CAATATTGAAAATTGACGGATGTGTTCATTGGTCAAATCGACACAAGTTA
AAATTCGTTTTTAG Coding sequence (CDS) from alignment at scaffold_171:7503..9366- >TCONS_00050424 ID=TCONS_00050424|Name=TCONS_00050424|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_171:7503..9366- (Clytia hemisphaerica)
ATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTA
TTGTAATAAGCATGACATTGACATTACTTTGTTCACTGAAAATAGTATGA
ACAATAAACGAAAAATTCCAAAGGAACGAATGGAAAAACTGCGAAGCGCT
AAAAAGAAAAATCAGAAATTCAATACCAATAGAAAAATGAAACCTTCTCT
TTCAAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATCAAAAT
CGAGATCGGACCAAGAAGCTGTTACAACTTCGCCATCAACCTCTATTTTA
GCGAATTACTCTGAAAGACGTTTCTGGAGTACTGACAGATCTCAAATGAA
GTTAGAATCAAAAGATTTGACTTCAAATCCACCAAAAGAAAGATTTGACG
AAAATTTTGTGATACCTAAATCACAAGCTTACTCCTCGAAATCTCACCAG
CCATCAATCCTGGATCAACAAAACCTCATTATACAAGCACGTCCAAACTC
CTCGACATTCCAAGGGGGTAGAGTGCATTCTCGACATATTCAGAAATCAA
ATCAACATTTCCCTCTCAAAAATACTGGTTTAAATCCAAATCTAAATACC
GCTAAAATGCAAAAAAGTGAAATTCGTTATGGGCCAAGATTCCATCGAGG
GATCAGCCAGGTTGGACCTCCAAAGCTGGCATTGAACCAAGTTAAGCAAT
CATTGGCTGCTGTGAGTCATCAACCAATTAGATTATTTCCTGCAGCTCCT
AGATTCGCTTCCAATCCGAAATGTGGTCTTGTATCTGTGTTTCCAAGAAT
GGCTACTCGTCCAAGGCTTTCACTTGTTCCAAGAGCGGGGTCTAGAGATT
TACATCCCACAGGATTCGAAGGTGTTGGCATTTCACGTCCATTTTTCTCA
CCACGGTTTCAACAAGTCCGATTGCCTACTATTCACAGGTATCCACACCA
TCAAGTCCAGCGTGCCGACAGTTTCCCAAGAGAGAGATGGGATAAGTACA
GTTTCAATCAATATTGATCCTCGAAATCTCACCAGCCATCAATCCTGGAT
CAACAAAACCTCATTATACAAACACGTCCAAACTCCTCGACATTCCAAGG
GGGTAGAGTGCATTCTCGACATATTCAAAAATCAGATCAACATTTCCCTC
TCAAAAATACTGGTTTAAATCCAAATCTAAATACTGCTCAAATGCAAAAA
AGTGAAATTCGTTATGGGCCAAGATTCCATCGAGGGATCAGCCAGGTTGG
ACCTCCAAGGCTGGCATTGAACCAAGTTAAGCAANCATTCGATATGGAGA
AATTCCCAAGAAGTAAAGAAGCTCTGGCATTTATGACCATGTATGATTCA
CGCGAAACAAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATGTGGCAT
CAAGCGAGAGACTCTATGTAGAGATAAAATGAAGGAGTTGGTAGATCCAA
ATATGATGTCAAAGCGCATGGTCAGATGTGAATCGTACAAGTTCTATAAC
GAACTGATAGAAGATTATTGTAATAAGCATGACATTGACATTACTTTGTT
CACTGAAAATAGTATGAACAATAAACGAAAAATTCCAAAGGAACGAATGG
AAAAACTGCGAAGCGCTAAAAAGAAAAATCAGAAATTCAATACCAATAGA
AAAATGAAACCTTCTCTTTCAAAGTCTTCCGAGGAGTCTCCAAAACGTTA
TTGGAACCAATCAAAATCGAGATCGGACCAAGAAGCTGTTACAACTTCGC
CATCAACCTCTATTTTAGCGAATTACTCTGAAAGACGTTTCTGGAGTACT
GACAGATCTCAAATGAAGTTAGAATCAAAAGATTTGACTTCAAATCCACC
AAAAGAAAGATTTGACGAAAATTTTGTGATACCTAAATCACAAGCTTACT
CCTCGAAATCTCACCAGCCATCAATCCTGGATCAACAAAACCTCATTATA
CAAGCACGTCCAAACTCCTCGACATTCCAAGGGGGTAGAGTGCATTCTCG
ACATATTCAGAAATCAAATCAACATTTCCCTCTCAAAAATACTGGTTTAA
ATCCAAATCTAAATACCGCTAAAATGCAAAAAAGTGAAATTCGTTATGGG
CCAAGATTCCATCGAGGGATCAGCCAGGTTGGACCTCCAAAGCTGGCATT
GAACCAAGTTAAGCAATCATTGGCTGCTGTGAGTCATCAACCAATTAGAT
TATTTCCTGCAGCTCCTAGATTCGCTTCCAATCCGAAATGTGGTCTTGTA
TCTGTGTTTCCAAGAATGGCTACTCGTCCAAGGCTTTCACTTGTTCCAAG
AGCGGGGTCTAGAGATTTACATCCCACAGGATTCGAAGGTGTTGGCATTT
CACGTCCATTTTTCTCACCACGGTTTCAACAAGTCCGATTGCCTACTATT
CACAGGTATCCACACCATCAAGTCCAGCGTGCCGACAGTTTCCCAAGAGA
GAGATGGGATAAGTACAGTTTCAATCAATATTGATCCTCGAAATCTCACC
AGCCATCAATCCTGGATCAACAAAACCTCATTATACAAACACGTCCAAAC
TCCTCGACATTCCAAGGGGGTAGAGTGCATTCTCGACATATTCAAAAATC
AGATCAACATTTCCCTCTCAAAAATACTGGTTTAAATCCAAATCTAAATA
CTGCTCAAATGCAAAAAAGTGAAATTCGTTATGGGCCAAGATTCCATCGA
GGGATCAGCCAGGTTGGACCTCCAAGGCTGGCATTGAACCAAGTTAAGCA
ANCATTCGATATGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGCATTTA
TGACCATGTATGATTCACGCGAAACAAGAAATCTTTTACCAAAGAAATTT
CTCGCTTTATGTGGCATCAAGCGAGAGACTCTATGTAGAGATAAAATGAA
GGAGTTGGTAGATCCAAATATGATGTCAAAGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050424-exon-scaffold_171-1575043694:8917..9366 | TCONS_00050424-exon-scaffold_171-1575043694:8917..9366 | Clytia hemisphaerica | exon |
| TCONS_00050424-exon-scaffold_171-1575043694:7503..8574 | TCONS_00050424-exon-scaffold_171-1575043694:7503..8574 | Clytia hemisphaerica | exon |
| TCONS_00050424-exon-scaffold_171-1510915933:8917..9366 | TCONS_00050424-exon-scaffold_171-1510915933:8917..9366 | Clytia hemisphaerica | exon |
| TCONS_00050424-exon-scaffold_171-1510915933:7503..8574 | TCONS_00050424-exon-scaffold_171-1510915933:7503..8574 | Clytia hemisphaerica | exon |
| TCONS_00050424-exon-scaffold_171-1491911889:8917..9366 | TCONS_00050424-exon-scaffold_171-1491911889:8917..9366 | Clytia hemisphaerica | exon |
| TCONS_00050424-exon-scaffold_171-1491911889:7503..8574 | TCONS_00050424-exon-scaffold_171-1491911889:7503..8574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:7503..9366 - |
Blast
The following BLAST results are available for this feature:
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