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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050425 ID=TCONS_00050425|Name=TCONS_00050425|organism=Clytia hemisphaerica|type=transcript|length=709bp
GAAAGTTCGATGACGATATTACTaacaatgaaaatgataaaCAATTTTCG
CCAACATCCAGCACTATGATAGACGAAAATATAGAAAGTTtgaattcaaa
tcaaaatgctCAGAAGAATGATCCATCTTGGGAATTCGCCAACATTCTGC
GATCGGAACGCTCGGGAGTGTACACAAGATTTGAGGTGGATGGAATTATT
CCTGAGAATGTTTTCCAAGCGTTTACACATGAAAGACGTCTTCATCACAG
GCGTATCAAGAAACAAAGAATTCAGAAGGAAAAGGGACAAATTATCACAG
TCACAGATGAAAAAATCGATACCAATGCAGCTGCTAACAAACATTTCAAT
GAGAGAATCGAAAATTATTGCCGAGAAAATGGTATCGATCCCATGAAATT
GCTAAAAAACGGACGAGAAAATATTAAACGGCATCGCGAAAATcctgaag
aaaataaaattgtatTCCAAGAGTTAAACATTCATAGATATCGGAGAAGT
CAAGAACCTATTGATTTGATGAACATTTACAGTTATAAAGAGTTAACGTG
GTTATTACCAAGAACATTTGTCGAAGGTTATCATAGGAAACGAAAGATCT
GGCTTGAGCAAAAGAAAAGCGAATTGGTTGAAAATACTCCGATCACACAA
AGGTTAAAATGTCATTTGCAACTTGTCGAAATATTAcacatttcattttt
tcatcttca Run BLAST on NCBI protein sequence of TCONS_00050425-protein >TCONS_00050425-protein ID=TCONS_00050425-protein|Name=TCONS_00050425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
KFDDDITNNENDKQFSPTSSTMIDENIESLNSNQNAQKNDPSWEFANILR
SERSGVYTRFEVDGIIPENVFQAFTHERRLHHRRIKKQRIQKEKGQIITV
TDEKIDTNAAANKHFNERIENYCRENGIDPMKLLKNGRENIKRHRENPEE
NKIVFQELNIHRYRRSQEPIDLMNIYSYKELTWLLPRTFVEGYHRKRKIW
LEQKKSELVENTPITQRLKCHLQLVEILHISFFHL Run BLAST on NCBI transcript from alignment at scaffold_171:13693..15598- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050425 ID=TCONS_00050425|Name=TCONS_00050425|organism=Clytia hemisphaerica|type=transcript|length=1906bp|location=Sequence derived from alignment at scaffold_171:13693..15598- (Clytia hemisphaerica)
GAAAGTTCGATGACGATATTACTAACAATGAAAATGATAAACAATTTTCG
CCAACATCCAGCACTATGATAGACGAAAATATAGAAAGTTTGAATTCAAA
TCAAAATGCTCAGAAGAATGATCCATCTTGGGAATTCGCCAACATTCTGC
GATCGGAACGCTCGGGAGTGTACACAAGATTTGAGGTGGATGGAATTATT
CCTGAGAATGTTTTCCAAGCGTTTACACATGAAAGACGTCTTCATCACAG
GCGTATCAAGAAACAAAGAATTCAGAAGGAAAAGGGACAAATTATCACAG
TCACAGATGAAAAAATCGTAAGTTTATTTTTCGAATTTTATACCATCGAA
TATTATATGTGATTCGGTCTTGTAAATATGTTGAAAGTTTCTTTTAACAA
ATTTGCAGGCAACCTTGCGGACACATGGGCTATGAATCGTTCATACATTT
TGGGTTAATTATTACATTGTTATATTAAATAAAGACAGGTATGCAACAAT
ACTGACACTTTCAATCATATTCAAACTTTGTATCAAAACCACACCAAGCC
ACGCAACATATGTAGGGAATAAGTGGCTTCAAATGCTACGTAGTACAATG
TCGGTCAAAATATATTGTGAATTTTGGTTAATTCCTCGTTTTCAGCAATT
TAAAGCTCGGGCGAAATAGTGGCTTTTGGGCATTTATTCGAATACCGGGT
GACCCACGAAAAAGTTCAGACGTTTCCCGACGTCTTGAGGCCGGACAAAT
TTAAAAAACGGATTTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAG
AAAATATAGCTTTTCTCAATGTTGACTCATTATTTTTTTTTGATTTTTTG
CACAATGATGCAAAATGGCAATACCTAAAATGTGGCGAAGCCCGATTTTC
AAAAAACATTTTTTTCCGACCGAAAATGCCGGAAATATGCCGGAAAAACT
GGTTTTTTGGCATTTTCTCAAGATTTTATCATTGGTTTTTTCTGATTTTT
TGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCCGAGTTCGATTT
TTGGGAAAAAAATTTTCCGGTTGAAAATGCCGGAAATCGCCGTGTTTGCA
GATTTTCATTGGAATTTTTCCTTTTCATTTCTATGTTTTTTACACAAAAA
CATTATTGATAACAATGCTCACCATCAAGCATGATTCAATTGTCAATAAA
ACTGATTTTTGCGACCAGAACTTTCTATTTATTTTTTCCCTACATCCCTT
CACTGTCCACCTATCAACAATCAATGATGAATTTATTGCGTTATGCATTT
TCGCTAAACGCTATATTTTCTGACTGATTTTTTTTCATTTTTCTCCTCGC
ATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTG
TTCTCAAATATTGTGACTTTGATTGTAGATTGAACACTAGCCTCCGACTA
CACCTTATTGTAGCAACACTGTCTATAATAATTCAGCGAAAGATTATTTT
TCCTTACCTCTCAGGATACCAATGCAGCTGCTAACAAACATTTCAATGAG
AGAATCGAAAATTATTGCCGAGAAAATGGTATCGATCCCATGAAATTGCT
AAAAAACGGACGAGAAAATATTAAACGGCATCGCGAAAATCCTGAAGAAA
ATAAAATTGTATTCCAAGAGTTAAACATTCATAGATATCGGAGAAGTCAA
GAACCTATTGATTTGATGAACATTTACAGTTATAAAGAGTTAACGTGGTT
ATTACCAAGAACATTTGTCGAAGGTTATCATAGGAAACGAAAGATCTGGC
TTGAGCAAAAGAAAAGCGAATTGGTTGAAAATACTCCGATCACACAAAGG
TTAAAATGTCATTTGCAACTTGTCGAAATATTACACATTTCATTTTTTCA
TCTTCA Coding sequence (CDS) from alignment at scaffold_171:13693..15598- >TCONS_00050425 ID=TCONS_00050425|Name=TCONS_00050425|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_171:13693..15598- (Clytia hemisphaerica)
GATACCAATGCAGCTGCTAACAAACATTTCAATGAGAGAATCGAAAATTA
TTGCCGAGAAAATGGTATCGATCCCATGAAATTGCTAAAAAACGGACGAG
AAAATATTAAACGGCATCGCGAAAATCCTGAAGAAAATAAAATTGTATTC
CAAGAGTTAAACATTCATAGATATCGGAGAAGTCAAGAACCTATTGATTT
GATGAACATTTACAGTTATAAAGAGTTAACGTGGTTATTACCAAGAACAT
TTGTCGAAGGTTATCATAGGAAACGAAAGATCTGGCTTGAGCAAAAGAAA
AGCGAATTGGTTGAAAATACTCCGATCACACAAAGGTTAAAATGTCATTT
GCAACTTGTCGAAATATTACACATTTCATTTTTTCATCTTAAGTTCGATG
ACGATATTACTAACAATGAAAATGATAAACAATTTTCGCCAACATCCAGC
ACTATGATAGACGAAAATATAGAAAGTTTGAATTCAAATCAAAATGCTCA
GAAGAATGATCCATCTTGGGAATTCGCCAACATTCTGCGATCGGAACGCT
CGGGAGTGTACACAAGATTTGAGGTGGATGGAATTATTCCTGAGAATGTT
TTCCAAGCGTTTACACATGAAAGACGTCTTCATCACAGGCGTATCAAGAA
ACAAAGAATTCAGAAGGAAAAGGGACAAATTATCACAGTCACAGATGAAA
AAATCGATACCAATGCAGCTGCTAACAAACATTTCAATGAGAGAATCGAA
AATTATTGCCGAGAAAATGGTATCGATCCCATGAAATTGCTAAAAAACGG
ACGAGAAAATATTAAACGGCATCGCGAAAATCCTGAAGAAAATAAAATTG
TATTCCAAGAGTTAAACATTCATAGATATCGGAGAAGTCAAGAACCTATT
GATTTGATGAACATTTACAGTTATAAAGAGTTAACGTGGTTATTACCAAG
AACATTTGTCGAAGGTTATCATAGGAAACGAAAGATCTGGCTTGAGCAAA
AGAAAAGCGAATTGGTTGAAAATACTCCGATCACACAAAGGTTAAAATGT
CATTTGCAACTTGTCGAAATATTACACATTTCATTTTTTCATCTTAAGTT
CGATGACGATATTACTAACAATGAAAATGATAAACAATTTTCGCCAACAT
CCAGCACTATGATAGACGAAAATATAGAAAGTTTGAATTCAAATCAAAAT
GCTCAGAAGAATGATCCATCTTGGGAATTCGCCAACATTCTGCGATCGGA
ACGCTCGGGAGTGTACACAAGATTTGAGGTGGATGGAATTATTCCTGAGA
ATGTTTTCCAAGCGTTTACACATGAAAGACGTCTTCATCACAGGCGTATC
AAGAAACAAAGAATTCAGAAGGAAAAGGGACAAATTATCACAGTCACAGA
TGAAAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050425-exon-scaffold_171-1575043694:15282..15598 | TCONS_00050425-exon-scaffold_171-1575043694:15282..15598 | Clytia hemisphaerica | exon |
| TCONS_00050425-exon-scaffold_171-1575043694:13693..14084 | TCONS_00050425-exon-scaffold_171-1575043694:13693..14084 | Clytia hemisphaerica | exon |
| TCONS_00050425-exon-scaffold_171-1510915933:15282..15598 | TCONS_00050425-exon-scaffold_171-1510915933:15282..15598 | Clytia hemisphaerica | exon |
| TCONS_00050425-exon-scaffold_171-1510915933:13693..14084 | TCONS_00050425-exon-scaffold_171-1510915933:13693..14084 | Clytia hemisphaerica | exon |
| TCONS_00050425-exon-scaffold_171-1491911889:15282..15598 | TCONS_00050425-exon-scaffold_171-1491911889:15282..15598 | Clytia hemisphaerica | exon |
| TCONS_00050425-exon-scaffold_171-1491911889:13693..14084 | TCONS_00050425-exon-scaffold_171-1491911889:13693..14084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:13693..15598 - |
Blast
The following BLAST results are available for this feature:
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