TCONS_00050413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050413
Unique NameTCONS_00050413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1077

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050413 ID=TCONS_00050413|Name=TCONS_00050413|organism=Clytia hemisphaerica|type=transcript|length=1077bp
gccagatatcaacaatcccATGTTTTTGACCAACTGTCCCATATTAGAGC
CATTGACAGTACAGAACAGACAAAATCTGCAATGGCCTAACGAAGCAAAT
CGATCCTTTTCATTAAAGTTTCCAAACTGTAAGGTGCTAAAGCaatgggc
tcaacttcagtactCACATGTGAAAaggaaggcccaattgtaaacaattt
tgtcaacgacggaattttgaaattcatggCGGAACCAGTGGTGCTTGTCG
GCGGAATGGCAACAGAACCAGTAGCACTTGTTGGTGAAATGGCCACAGAA
CGAAGAAGGCTCTTCAGTGAAATGGCGACAGAACCAGTAGTGCTCATCAG
CGGAATGGCGACAGAACCAGTAGCACTCGAAGGTGGAATGGCAACAGAAC
CGGTAGTGCTCGTTGGCGGTATAGCGACAGAACCGGTAGTGCTCGTCGCT
GGTATGGCGACAGAACCAGTAGTGCTTGTCAGTGGAATGGCAACAGAACT
AGTAGTGCTAGTCGGCGGCATGGCGACAGAACCAGTAGTGCTAGTCGGCT
GTATGGCGACAGAACCTGTAGCGCTCGTTTGCGGAATGGTGACAGAAACA
GTAGCACTCGTTGGCGGAATGGTGACAGAACCAGTAGTGCTTGTCAGCGG
TATGTCGAAAGAACCAGTAGCGCTTGTCGGTGGAATGGCcattttttaaa
atgtaaagATGGAACCGTTTCTTAAAAGAGATaaagtaaaatatatattt
ttaaaaacagaaaagaaattgccaaacataaaacaaacgtaaaaaacaaa
atagataTCACTAACGACATGGCATTGCaaagtttatttttaaaagtaaa
acaagcaacatgctgaatggacctacctgatgatgaaagttagttagcaa
tgcgaaaagaaaaataaaaaaaatcagtcagaaaatatatagcatttagc
gaaaatacacaacacaataaattcatcattgattgttgatggggggagag
agaagggttgtagggaaaaaattaataggaagttctggtcgcaaaaatca
gttttattgacaattgaatcatgcttg
Run BLAST on NCBI

transcript from alignment at scaffold_171:78911..80875+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050413 ID=TCONS_00050413|Name=TCONS_00050413|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at scaffold_171:78911..80875+ (Clytia hemisphaerica)
gccagatatcaacaatcccATGTTTTTGACCAACTGTCCCATATTAGAGC
CATTGACAGTACAGAACAGACAAAATCTGCAATGGCCTAACGAAGCAAAT
CGATCCTTTTCATTAAAGTTTCCAAACTGTAAGGTGCTAAAGCaatgggc
tcaacttcagtactCACATGTGAAAaggaaggcccaattgtaaacaattt
tgtcaacgacggaattttgaaattcatggCGGAACCAGTGGTGCTTGTCG
GCGGAATGGCAACAGAACCAGTAGCACTTGTTGGTGAAATGGCCACAGAA
CGAAGAAGGCTCTTCAGTGAAATGGCGACAGAACCAGTAGTGCTCATCAG
CGGAATGGCGACAGAACCAGTAGCACTCGAAGGTGGAATGGCAACAGAAC
CGGTAGTGCTCGTTGGCGGTATAGCGACAGAACCGGTAGTGCTCGTCGGT
GGTATAGCGACAGAACCAGTAGCGCTCGTCGGCGGAATGGCCACAGAACC
AAGAAGGCTCCTCAGCGAAATGAAGACAGAACCATTAGTGCTCGTCGGGG
GAATGTCGAAAGAACCAGTAGTGCTCGTTGGCGGTATGGCGACAGAACCA
TTAGTGCTCGTCGGCAGTATGACAACAGAACCAGTAGCGCTTGTTGGTGG
AATGGCCACAGAACGAAGAAGGCTCTTCAGTGAAATGGCGACAGAACCTG
TAGCGCTCGTTGGCGGAATGGTAACAGAACCAGTAGTGCTTGTTGGCGGA
ATGGCGACAGAACCATTAGTGCTCGTCGGCGGAATGGCGACAGAACCATT
AGTGCTCGTCGGCGGTATGACAACAGAACCAGTAGCGCTTGTTGGTGGAA
TGGTGACAGAAACAGTAGCGCTCGTTGGCGGAATGGCGACAGAACCATTA
GTGCTTGTCGGCGGTATGACAACAGAACCAGTAGTGCTTGTTGGCGGTAT
GGCGACAGAACCAGTAGCCCTCGTCGACGGAATGCTGACAGAAAAAGTAG
CGCTTGTTGGCGGAATGGCGACGGAACCAGTAGTGCTCGTCGGCGGTATG
ACGACGGAGAAAGGAGCGCTCGTCGGCAGAATTGTGACAGAACCAGTAGT
GCTTGTTGGCGGAATGGCGACAGAACCAGTAGCGCTTGTTGGTGGAATGG
TGACAGAAACAGTAGCGTTAGTTGGTGGAATGGCGACAGAACCAGTGGTG
CTTGTCGGCGGTATGGTGACAGAACCAGTGGTGCTCGTCGGTGTAATGGC
GACTGAACCAGTAGCGCTTGCCGACGGTATGGCCTTTTTGTAAAATGTAA
AGAGAGAACCGTTTCTTAAAAGAGATAAAGTAAAAGCTGGTATGGCGACA
GAACCAGTAGTGCTTGTCAGTGGAATGGCAACAGAACTAGTAGTGCTAGT
CGGCGGCATGGCGACAGAACCAGTAGTGCTAGTCGGCTGTATGGCGACAG
AACCTGTAGCGCTCGTTTGCGGAATGGTGACAGAAACAGTAGCACTCGTT
GGCGGAATGGTGACAGAACCAGTAGTGCTTGTCAGCGGTATGTCGAAAGA
ACCAGTAGCGCTTGTCGGTGGAATGGCcattttttaaaatgtaaagATGG
AACCGTTTCTTAAAAGAGATaaagtaaaatatatatttttaaaaacagaa
aagaaattgccaaacataaaacaaacgtaaaaaacaaaatagataTCACT
AACGACATGGCATTGCaaagtttatttttaaaagtaaaacaagcaacatg
ctgaatggacctacctgatgatgaaagttagttagcaatgcgaaaagaaa
aataaaaaaaatcagtcagaaaatatatagcatttagcgaaaatacacaa
cacaataaattcatcattgattgttgatggggggagagagaagggttgta
gggaaaaaattaataggaagttctggtcgcaaaaatcagttttattgaca
attgaatcatgcttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031922XLOC_031922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050413-exon-scaffold_171-1491911889:78911..79358TCONS_00050413-exon-scaffold_171-1491911889:78911..79358Clytia hemisphaericaexon
TCONS_00050413-exon-scaffold_171-1510915933:78911..79358TCONS_00050413-exon-scaffold_171-1510915933:78911..79358Clytia hemisphaericaexon
TCONS_00050413-exon-scaffold_171-1575043694:78911..79358TCONS_00050413-exon-scaffold_171-1575043694:78911..79358Clytia hemisphaericaexon
TCONS_00050413-exon-scaffold_171-1491911889:80247..80875TCONS_00050413-exon-scaffold_171-1491911889:80247..80875Clytia hemisphaericaexon
TCONS_00050413-exon-scaffold_171-1510915933:80247..80875TCONS_00050413-exon-scaffold_171-1510915933:80247..80875Clytia hemisphaericaexon
TCONS_00050413-exon-scaffold_171-1575043694:80247..80875TCONS_00050413-exon-scaffold_171-1575043694:80247..80875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:78911..80875 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.637285	0.743404	0.525936	1.23338	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.201798	0	0.565258	0.276637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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