TCONS_00050415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050415
Unique NameTCONS_00050415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050415 ID=TCONS_00050415|Name=TCONS_00050415|organism=Clytia hemisphaerica|type=transcript|length=1385bp
CTCAGGTGGTGTGCTCTTGTTATTTCATTGGCTGTCTTTAGATatattct
attgttttatttagCGCGCGCGGGAAAAATCACTACTTCCCGCCATTTCA
CTTTTTCTGTCATTATTCACTCAGACTTCGATCAACGAGGACACGCAAGC
TGAACCACGAGACTGTCTTTTTGCCAAGCCCTTTTTTATAAAACCTCAAT
ATGTTTGAAGCAAAATTAGCAGATGGCACTCCACTCAAAAAGCTTTTTGA
AGCTATGAAAGATTTATTCACAAATGTTAACTTCGAGTGCAACGAAAATG
GTATCAGTTGTCAGGCTATGGATTCCAGTCACGTATGTTTATGTTCTGTT
TTAATTCGACATGATGCCTTTGAGCCATACAGATGTGACAGAAGTGTAAC
TTTGGGTATGAATTGTGGTACTATGGCTAAAATTTTGAGGTGTGCTGGTA
ATGATGAATCTATCTGTTTAACCGCTGAAGACACTGCTGATGTTGTatct
ctaatttttgaaaaagcaaaCCAAGAGCGAGTCtctaaatttgaaatgaa
attaatgGACATTGATAGTGAACATTTAGGTATCCCAGACCAAGATTATG
ATGCTGTTGTCAAACTCCCTTCTCAAGAACTTTCACGAATTATTAGAGAT
TTAAGTCAATTTGGTGATACTGTTACAATTGCTTGTACTAAAGATGGCGT
TCGATTCTCATGTAATGGGGACTCTGGTTCAGGAAGCATCACTTTACGAA
ACTCGTCTTCTGTCGACTCGAACGATGACAATGAAGTCTCAATTGAACTG
AATGAAGCAGTTACACAAACATATGCAATGAGATTCTTGATTCTGTTTGG
CAAGGCCACATCACTATCCAAATCATGTGTATTGTCAATCTGTCAAGATA
TTCCATTGGTTGCAGAATACAAAATTGGAGACTGCGGACACATCAGATAC
TTCCTTGCTCCTAAAATTGATGATAATGAGGAAATGGACGAGGGTGAGGA
TGAAGGTGCAAACGAAAATACTGAAGAGTGAAAACAATTTTTGCTGGGGT
TTGGTTATTGTTCATTCGTACAAACACACACTACTTACTCTTTGTTACAA
TTAGTAATGTGACTCCATTAATGAATCATTGACATTCAAGCGATACACAT
CATCGATTGCCTGATCAGGTCCTTTTTATGACAAATTTTTTGTGTATATA
ATGAGAATCTTTGTATCAGATGAGAACATTGTGGTATAAtaaattttaat
gtaaataCATCAGAAATTGTCTCATCAGACCATTTTTCATGCCTTTATAA
GGAATCTTTTTACCCAACTATGTCATTCTTAATTTTGATTAAAACATccc
cttttaaagaaaaacatttagaaaGTTCCTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00050415-protein

>TCONS_00050415-protein ID=TCONS_00050415-protein|Name=TCONS_00050415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MFEAKLADGTPLKKLFEAMKDLFTNVNFECNENGISCQAMDSSHVCLCSV
LIRHDAFEPYRCDRSVTLGMNCGTMAKILRCAGNDESICLTAEDTADVVS
LIFEKANQERVSKFEMKLMDIDSEHLGIPDQDYDAVVKLPSQELSRIIRD
LSQFGDTVTIACTKDGVRFSCNGDSGSGSITLRNSSSVDSNDDNEVSIEL
NEAVTQTYAMRFLILFGKATSLSKSCVLSICQDIPLVAEYKIGDCGHIRY
FLAPKIDDNEEMDEGEDEGANENTEE
Run BLAST on NCBI

transcript from alignment at scaffold_171:87691..89318+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050415 ID=TCONS_00050415|Name=TCONS_00050415|organism=Clytia hemisphaerica|type=transcript|length=1628bp|location=Sequence derived from alignment at scaffold_171:87691..89318+ (Clytia hemisphaerica)
CTCAGGTGGTGTGCTCTTGTTATTTCATTGGCTGTCTTTAGATatattct
attgttttatttagCGCGCGCGGGAAAAATCACTACTTCCCGCCATTTCA
CTTTTTCTGTCATTATTCACTCAGACTTCGATCAACGAGGACACGCAAGC
TGAACCACGAGACTGTCTTTTTGCCAAGCCCTTTTTTATAAAACCTCAAT
ATGTTTGAAGCAAAATTAGCAGATGGCACTCCACTCAAAAAGCTTTTTGA
AGCTATGAAAGATTTATTCACAAATGTTAACTTCGAGTGCAACGAAAATG
GTATCAGTTGTCAGGCTATGGATTCCAGTCACGTATGTTTATGTTCTGTT
TTAATTCGACATGATGCCTTTGAGCCATACAGATGTGACAGAAGTGTAAC
TTTGGGTATGAATTGTGGTACTATGGCTAAAATTTTGAGGTGTGCTGGTA
ATGATGAATCTATCTGTTTAACCGCTGAAGACACTGCTGATGTTGTatct
ctaatttttgaaaaagcaaaCCAAGAGCGAGTCtctaaatttgaaatgaa
attaatgGACATTGATAGTGAACATTTAGGTATCCCAGACCAAGATTATG
ATGCTGTTGTCAAACTCCCTTCTCAAGAACTTTCACGAATTATTAGAGAT
TTAAGTCAATTTGGTGATACTGTTACAATTGCTTGTACTAAAGATGGCGT
TCGATTCTCATGTAATGGGGACTCTGGTTCAGGAAGCATCACTTTACGAA
ACTCGTCTTCTGTCGACTCGAACGATGACAATGAAGTCTCAATTGAACTG
AATGAAGCAGTTACACAAACATATGCAATGAGATTCTTGATTCTGTTTGG
CAAGGTAAATATTTCAATACATCACAGTTGTGTACTGAAAGCATTTTTAT
TCTGTTTCTTGATTGTAAATATACAGTTGAATATATTCTGCAAGAAAGCT
AATGTTGCACCACTCATCCTGCCAGTGGTCATTCTGTTCAAGCCTTGTTT
TTAACAATTATTCTGCAGACCACCGAGTGACAAGGCATGTATAATTCAAT
GTCAATTATTTATCTTCTTTGCTAACTAAATTTCCAATATTCTTTAGGCC
ACATCACTATCCAAATCATGTGTATTGTCAATCTGTCAAGATATTCCATT
GGTTGCAGAATACAAAATTGGAGACTGCGGACACATCAGATACTTCCTTG
CTCCTAAAATTGATGATAATGAGGAAATGGACGAGGGTGAGGATGAAGGT
GCAAACGAAAATACTGAAGAGTGAAAACAATTTTTGCTGGGGTTTGGTTA
TTGTTCATTCGTACAAACACACACTACTTACTCTTTGTTACAATTAGTAA
TGTGACTCCATTAATGAATCATTGACATTCAAGCGATACACATCATCGAT
TGCCTGATCAGGTCCTTTTTATGACAAATTTTTTGTGTATATAATGAGAA
TCTTTGTATCAGATGAGAACATTGTGGTATAAtaaattttaatgtaaata
CATCAGAAATTGTCTCATCAGACCATTTTTCATGCCTTTATAAGGAATCT
TTTTACCCAACTATGTCATTCTTAATTTTGATTAAAACATccccttttaa
agaaaaacatttagaaaGTTCCTTTTTG

Coding sequence (CDS) from alignment at scaffold_171:87691..89318+

>TCONS_00050415 ID=TCONS_00050415|Name=TCONS_00050415|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_171:87691..89318+ (Clytia hemisphaerica)
ATGTTTGAAGCAAAATTAGCAGATGGCACTCCACTCAAAAAGCTTTTTGA
AGCTATGAAAGATTTATTCACAAATGTTAACTTCGAGTGCAACGAAAATG
GTATCAGTTGTCAGGCTATGGATTCCAGTCACGTATGTTTATGTTCTGTT
TTAATTCGACATGATGCCTTTGAGCCATACAGATGTGACAGAAGTGTAAC
TTTGGGTATGAATTGTGGTACTATGGCTAAAATTTTGAGGTGTGCTGGTA
ATGATGAATCTATCTGTTTAACCGCTGAAGACACTGCTGATGTTGTatct
ctaatttttgaaaaagcaaaCCAAGAGCGAGTCtctaaatttgaaatgaa
attaatgGACATTGATAGTGAACATTTAGGTATCCCAGACCAAGATTATG
ATGCTGTTGTCAAACTCCCTTCTCAAGAACTTTCACGAATTATTAGAGAT
TTAAGTCAATTTGGTGATACTGTTACAATTGCTTGTACTAAAGATGGCGT
TCGATTCTCATGTAATGGGGACTCTGGTTCAGGAAGCATCACTTTACGAA
ACTCGTCTTCTGTCGACTCGAACGATGACAATGAAGTCTCAATTGAACTG
AATGAAGCAGTTACACAAACATATGCAATGAGATTCTTGATTCTGTTTGG
CAAGGCCACATCACTATCCAAATCATGTGTATTGTCAATCTGTCAAGATA
TTCCATTGGTTGCAGAATACAAAATTGGAGACTGCGGACACATCAGATAC
TTCCTTGCTCCTAAAATTGATGATAATGAGGAAATGGACGAGGGTGAGGA
TGAAGGTGCAAACGAAAATACTGAAGAGTGAATGTTTGAAGCAAAATTAG
CAGATGGCACTCCACTCAAAAAGCTTTTTGAAGCTATGAAAGATTTATTC
ACAAATGTTAACTTCGAGTGCAACGAAAATGGTATCAGTTGTCAGGCTAT
GGATTCCAGTCACGTATGTTTATGTTCTGTTTTAATTCGACATGATGCCT
TTGAGCCATACAGATGTGACAGAAGTGTAACTTTGGGTATGAATTGTGGT
ACTATGGCTAAAATTTTGAGGTGTGCTGGTAATGATGAATCTATCTGTTT
AACCGCTGAAGACACTGCTGATGTTGTatctctaatttttgaaaaagcaa
aCCAAGAGCGAGTCtctaaatttgaaatgaaattaatgGACATTGATAGT
GAACATTTAGGTATCCCAGACCAAGATTATGATGCTGTTGTCAAACTCCC
TTCTCAAGAACTTTCACGAATTATTAGAGATTTAAGTCAATTTGGTGATA
CTGTTACAATTGCTTGTACTAAAGATGGCGTTCGATTCTCATGTAATGGG
GACTCTGGTTCAGGAAGCATCACTTTACGAAACTCGTCTTCTGTCGACTC
GAACGATGACAATGAAGTCTCAATTGAACTGAATGAAGCAGTTACACAAA
CATATGCAATGAGATTCTTGATTCTGTTTGGCAAGGCCACATCACTATCC
AAATCATGTGTATTGTCAATCTGTCAAGATATTCCATTGGTTGCAGAATA
CAAAATTGGAGACTGCGGACACATCAGATACTTCCTTGCTCCTAAAATTG
ATGATAATGAGGAAATGGACGAGGGTGAGGATGAAGGTGCAAACGAAAAT
ACTGAAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031923XLOC_031923Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050415-proteinTCONS_00050415-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050415-exon-scaffold_171-1491911889:87691..88544TCONS_00050415-exon-scaffold_171-1491911889:87691..88544Clytia hemisphaericaexon
TCONS_00050415-exon-scaffold_171-1510915933:87691..88544TCONS_00050415-exon-scaffold_171-1510915933:87691..88544Clytia hemisphaericaexon
TCONS_00050415-exon-scaffold_171-1575043694:87691..88544TCONS_00050415-exon-scaffold_171-1575043694:87691..88544Clytia hemisphaericaexon
TCONS_00050415-exon-scaffold_171-1491911889:88788..89318TCONS_00050415-exon-scaffold_171-1491911889:88788..89318Clytia hemisphaericaexon
TCONS_00050415-exon-scaffold_171-1510915933:88788..89318TCONS_00050415-exon-scaffold_171-1510915933:88788..89318Clytia hemisphaericaexon
TCONS_00050415-exon-scaffold_171-1575043694:88788..89318TCONS_00050415-exon-scaffold_171-1575043694:88788..89318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:87691..89318 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1780.98	1794.54	2498.14	2565.98	230.472	183.183	187.452	192.411	253.611	209.751	165.995	159.147	105.496	99.7237	141.686	153.816	266.715	241.527	45.9555	49.8677	166.959	158.563	655.692	531.337	234.537	251.726	150.533	126.571	294.494	332.794
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000730Pr_cel_nuc_antig
IPR022649Pr_cel_nuc_antig_C
IPR022648Pr_cel_nuc_antig_N
Vocabulary: Biological Process
TermDefinition
GO:0006275regulation of DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0030337DNA polymerase processivity factor activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006275 regulation of DNA replication
molecular_function GO:0003677 DNA binding
molecular_function GO:0030337 DNA polymerase processivity factor activity
Blast
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BLAST of TCONS_00050415 vs. Swiss-Prot (Human)
Match: PCNA (Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.960e-91
Identity = 133/256 (51.95%), Postives = 188/256 (73.44%), Query Frame = 3 
Query:  201 MFEAKLADGTPLKKLFEAMKDLFTNVNFECNENGISCQAMDSSHVCLCSVLIRHDAFEPYRCDRSVTLGMNCGTMAKILRCAGNDESICLTAEDTADVVSLIFEKANQERVSKFEMKLMDIDSEHLGIPDQDYDAVVKLPSQELSRIIRDLSQFGDTVTIACTKDGVRFSCNGDSGSGSITLRXXXXXXXXXXXXXXIELNEAVTQTYAMRFLILFGKATSLSKSCVLSICQDIPLVAEYKIGDCGHIRYFLAPKI 968
            MFEA+L  G+ LKK+ EA+KDL     ++ + +G++ Q+MDSSHV L  + +R + F+ YRCDR++ +G+N  +M+KIL+CAGN++ I L AED AD ++L+FE  NQE+VS +EMKLMD+D E LGIP+Q+Y  VVK+PS E +RI RDLS  GD V I+C KDGV+FS +G+ G+G+I L + +S    ++  V+IE+NE V  T+A+R+L  F KAT LS +  LS+  D+PLV EYKI D GH++Y+LAPKI
Sbjct:    1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKL-SQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKI 255
The following BLAST results are available for this feature:
BLAST of TCONS_00050415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCNA1.960e-9151.95Proliferating cell nuclear antigen OS=Homo sapiens... [more]
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