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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050440 ID=TCONS_00050440|Name=TCONS_00050440|organism=Clytia hemisphaerica|type=transcript|length=1623bp
GCTTGTACTAGGTTGTATTTCTATTCAAATTTGAGTGTTCATTAGAACTT
TGAAACATTGCATCATTGTTGACCGCCGCCATCTTCTTCTGTTTCGCCTT
CAGATGAATCTGAAACATCCAATGTTGGTTGATCACCTAACGCCCTCGAG
CGATCATGGGGCGGCATGGGCGGTGATGAAACAGCTGATACACGCTGTTC
TTCGCCTTCATTTGTCTCTGGTGCAGGACGGATGGGCGGGAATGGCGTAT
CAGCGCCCATTCTCATCATTTCACGTGGATTAGCTGGAAGAGTTTCGTTT
TGAACAACTTCTCTTTGTTCCTGGTAATCGCCCACACGGACGATTTCGTA
CGCTGTGTAACAATCCACTGATTCTCCTGAGCTCAGAAAGATGTCTTGAC
AAACGATGAAATCTCGGTTTTCCACATGGTTGCGATACAACCGGAATCTG
ATAGTTGGGAAATATCGATAAGTGATGTGTACTTTCCTGTTCTCTAATGT
TTTCAAGTAGTAACCACGTCGACGGAAAAACTCTCCATTGTGTTGACCGC
GCGGGCTACGAGCGGTCTTGAGACCAAAATGACGGATGTTATAGATGGGC
TGTGATGCGATTTTACTGAAACTTTTCCGGTGCCAGGGCGAAGGTAACAT
GAAGATGAGATACTCCACCAGGGCGGCATTCTGAACGCCCACTAAATGAT
ATTCACCCATTGCACATTGATATTTCACGACACGTTTCGTCGGGAAGCAT
TCGGCCGTTCGCATATTGAACCGAGAACTGAATCGGTGCATGATACTCGG
TGTTTCTTCGTGTGTTTTGAAAGTCGCAAACCGAATTCTCCATCTGTTCT
GATCGAAGATTTGCATCACTTCATTGACATCTAACCGCTCTGATCCTGAC
GGTGAACTCTGATTAAACCATGCACGAAGCGTGTGCTTGTAATCGGAAAT
GTCAGCTATAAGTAGGAATCCACAATGACGCCATGTtctcaaacaaagat
ttttccaTAATAAATCGTCATATGCGAATAAACGCGCGGCGTGTGATGCT
CCAGCGAATTTACATAATTGCTCTGCTGTAAGGTAACGTAGGATTTGAAA
TGTAATTTCCTTTGGTAGATATTCGAGGAAATTACATCCTTGAGATTGAT
TATTCGTCTTCTTGTTGCCTTGAAGACATTTCATATTCGGTGTGTTAGAA
TGTACATTTGGGGGATAGAAATTCTGATAATATTGTAACTGTAAAGTCAT
TGCACCTTGTTTCAAAAGGAAAGATTTCTGTCGAACGTAAGTAACATCTT
CACGTCTGTTGCGCGAACGTTTGCTGAAGTAAACACAGTATTCTTGCTCT
ACTGTTTCGTCCAGATCTTGATCAGGGTCGCCGTTCAAAACACGGTACTC
ACTCTGTGGGAATAAACGACTCGGTGTTCGCTGCTGTACGGTCGCCATGT
TGCGTGAGTGCCGTACTGACGCTGTGTGGTGTCTTCTCGAAAAAATGTTG
AGTAAAAGATGATATCGGTGCAAAAGAGTGTTACATTTCTGATAAGTTAG
AATTGTGTTGGTATATTTGTGATTTGAACTTCCTTTTGTGAGTTTGGTTG
TTTTGGAAGTGTCAAAGTTTACA Run BLAST on NCBI protein sequence of TCONS_00050440-protein >TCONS_00050440-protein ID=TCONS_00050440-protein|Name=TCONS_00050440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
VNFDTSKTTKLTKGSSNHKYTNTILTYQKCNTLLHRYHLLLNIFSRRHHT
ASVRHSRNMATVQQRTPSRLFPQSEYRVLNGDPDQDLDETVEQEYCVYFS
KRSRNRREDVTYVRQKSFLLKQGAMTLQLQYYQNFYPPNVHSNTPNMKCL
QGNKKTNNQSQGCNFLEYLPKEITFQILRYLTAEQLCKFAGASHAARLFA
YDDLLWKNLCLRTWRHCGFLLIADISDYKHTLRAWFNQSSPSGSERLDVN
EVMQIFDQNRWRIRFATFKTHEETPSIMHRFSSRFNMRTAECFPTKRVVK
YQCAMGEYHLVGVQNAALVEYLIFMLPSPWHRKSFSKIASQPIYNIRHFG
LKTARSPRGQHNGEFFRRRGYYLKTLENRKVHITYRYFPTIRFRLYRNHV
ENRDFIVCQDIFLSSGESVDCYTAYEIVRVGDYQEQREVVQNETLPANPR
EMMRMGADTPFPPIRPAPETNEGEEQRVSAVSSPPMPPHDRSRALGDQPT
LDVSDSSEGETEEDGGGQQ Run BLAST on NCBI transcript from alignment at scaffold_171:104283..105905 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050440 ID=TCONS_00050440|Name=TCONS_00050440|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at scaffold_171:104283..105905 (Clytia hemisphaerica)
TGTAAACTTTGACACTTCCAAAACAACCAAACTCACAAAAGGAAGTTCAA
ATCACAAATATACCAACACAATTCTAACTTATCAGAAATGTAACACTCTT
TTGCACCGATATCATCTTTTACTCAACATTTTTTCGAGAAGACACCACAC
AGCGTCAGTACGGCACTCACGCAACATGGCGACCGTACAGCAGCGAACAC
CGAGTCGTTTATTCCCACAGAGTGAGTACCGTGTTTTGAACGGCGACCCT
GATCAAGATCTGGACGAAACAGTAGAGCAAGAATACTGTGTTTACTTCAG
CAAACGTTCGCGCAACAGACGTGAAGATGTTACTTACGTTCGACAGAAAT
CTTTCCTTTTGAAACAAGGTGCAATGACTTTACAGTTACAATATTATCAG
AATTTCTATCCCCCAAATGTACATTCTAACACACCGAATATGAAATGTCT
TCAAGGCAACAAGAAGACGAATAATCAATCTCAAGGATGTAATTTCCTCG
AATATCTACCAAAGGAAATTACATTTCAAATCCTACGTTACCTTACAGCA
GAGCAATTATGTAAATTCGCTGGAGCATCACACGCCGCGCGTTTATTCGC
ATATGACGATTTATTAtggaaaaatctttgtttgagaACATGGCGTCATT
GTGGATTCCTACTTATAGCTGACATTTCCGATTACAAGCACACGCTTCGT
GCATGGTTTAATCAGAGTTCACCGTCAGGATCAGAGCGGTTAGATGTCAA
TGAAGTGATGCAAATCTTCGATCAGAACAGATGGAGAATTCGGTTTGCGA
CTTTCAAAACACACGAAGAAACACCGAGTATCATGCACCGATTCAGTTCT
CGGTTCAATATGCGAACGGCCGAATGCTTCCCGACGAAACGTGTCGTGAA
ATATCAATGTGCAATGGGTGAATATCATTTAGTGGGCGTTCAGAATGCCG
CCCTGGTGGAGTATCTCATCTTCATGTTACCTTCGCCCTGGCACCGGAAA
AGTTTCAGTAAAATCGCATCACAGCCCATCTATAACATCCGTCATTTTGG
TCTCAAGACCGCTCGTAGCCCGCGCGGTCAACACAATGGAGAGTTTTTCC
GTCGACGTGGTTACTACTTGAAAACATTAGAGAACAGGAAAGTACACATC
ACTTATCGATATTTCCCAACTATCAGATTCCGGTTGTATCGCAACCATGT
GGAAAACCGAGATTTCATCGTTTGTCAAGACATCTTTCTGAGCTCAGGAG
AATCAGTGGATTGTTACACAGCGTACGAAATCGTCCGTGTGGGCGATTAC
CAGGAACAAAGAGAAGTTGTTCAAAACGAAACTCTTCCAGCTAATCCACG
TGAAATGATGAGAATGGGCGCTGATACGCCATTCCCGCCCATCCGTCCTG
CACCAGAGACAAATGAAGGCGAAGAACAGCGTGTATCAGCTGTTTCATCA
CCGCCCATGCCGCCCCATGATCGCTCGAGGGCGTTAGGTGATCAACCAAC
ATTGGATGTTTCAGATTCATCTGAAGGCGAAACAGAAGAAGATGGCGGCG
GTCAACAATGATGCAATGTTTCAAAGTTCTAATGAACACTCAAATTTGAA
TAGAAATACAACCTAGTACAAGC Coding sequence (CDS) from alignment at scaffold_171:104283..105905 >TCONS_00050440 ID=TCONS_00050440|Name=TCONS_00050440|organism=Clytia hemisphaerica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_171:104283..105905 (Clytia hemisphaerica)
GTAAACTTTGACACTTCCAAAACAACCAAACTCACAAAAGGAAGTTCAAA
TCACAAATATACCAACACAATTCTAACTTATCAGAAATGTAACACTCTTT
TGCACCGATATCATCTTTTACTCAACATTTTTTCGAGAAGACACCACACA
GCGTCAGTACGGCACTCACGCAACATGGCGACCGTACAGCAGCGAACACC
GAGTCGTTTATTCCCACAGAGTGAGTACCGTGTTTTGAACGGCGACCCTG
ATCAAGATCTGGACGAAACAGTAGAGCAAGAATACTGTGTTTACTTCAGC
AAACGTTCGCGCAACAGACGTGAAGATGTTACTTACGTTCGACAGAAATC
TTTCCTTTTGAAACAAGGTGCAATGACTTTACAGTTACAATATTATCAGA
ATTTCTATCCCCCAAATGTACATTCTAACACACCGAATATGAAATGTCTT
CAAGGCAACAAGAAGACGAATAATCAATCTCAAGGATGTAATTTCCTCGA
ATATCTACCAAAGGAAATTACATTTCAAATCCTACGTTACCTTACAGCAG
AGCAATTATGTAAATTCGCTGGAGCATCACACGCCGCGCGTTTATTCGCA
TATGACGATTTATTAtggaaaaatctttgtttgagaACATGGCGTCATTG
TGGATTCCTACTTATAGCTGACATTTCCGATTACAAGCACACGCTTCGTG
CATGGTTTAATCAGAGTTCACCGTCAGGATCAGAGCGGTTAGATGTCAAT
GAAGTGATGCAAATCTTCGATCAGAACAGATGGAGAATTCGGTTTGCGAC
TTTCAAAACACACGAAGAAACACCGAGTATCATGCACCGATTCAGTTCTC
GGTTCAATATGCGAACGGCCGAATGCTTCCCGACGAAACGTGTCGTGAAA
TATCAATGTGCAATGGGTGAATATCATTTAGTGGGCGTTCAGAATGCCGC
CCTGGTGGAGTATCTCATCTTCATGTTACCTTCGCCCTGGCACCGGAAAA
GTTTCAGTAAAATCGCATCACAGCCCATCTATAACATCCGTCATTTTGGT
CTCAAGACCGCTCGTAGCCCGCGCGGTCAACACAATGGAGAGTTTTTCCG
TCGACGTGGTTACTACTTGAAAACATTAGAGAACAGGAAAGTACACATCA
CTTATCGATATTTCCCAACTATCAGATTCCGGTTGTATCGCAACCATGTG
GAAAACCGAGATTTCATCGTTTGTCAAGACATCTTTCTGAGCTCAGGAGA
ATCAGTGGATTGTTACACAGCGTACGAAATCGTCCGTGTGGGCGATTACC
AGGAACAAAGAGAAGTTGTTCAAAACGAAACTCTTCCAGCTAATCCACGT
GAAATGATGAGAATGGGCGCTGATACGCCATTCCCGCCCATCCGTCCTGC
ACCAGAGACAAATGAAGGCGAAGAACAGCGTGTATCAGCTGTTTCATCAC
CGCCCATGCCGCCCCATGATCGCTCGAGGGCGTTAGGTGATCAACCAACA
TTGGATGTTTCAGATTCATCTGAAGGCGAAACAGAAGAAGATGGCGGCGG
TCAACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050440-exon-scaffold_171-1491911889:104283..105905 | TCONS_00050440-exon-scaffold_171-1491911889:104283..105905 | Clytia hemisphaerica | exon |
| TCONS_00050440-exon-scaffold_171-1510915933:104283..105905 | TCONS_00050440-exon-scaffold_171-1510915933:104283..105905 | Clytia hemisphaerica | exon |
| TCONS_00050440-exon-scaffold_171-1575043694:104283..105905 | TCONS_00050440-exon-scaffold_171-1575043694:104283..105905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:104283..105905 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001810 | F-box_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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