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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050435 ID=TCONS_00050435|Name=TCONS_00050435|organism=Clytia hemisphaerica|type=transcript|length=1483bp
CCGGTCCGGGCCGCTAGTTAGTGATTTTTAGTAACGATTACATGAAAAAA
TTGTTGTAAAAGGATGTCGACTGGGCGATCGGGGCCGGTCTGGGGCCGGT
CTAGGACCGGACGCTTCGCAGCGGCAACTAAATTAACTAGACTCGTAGCG
GCCTTTTAGTAAATTTTTACCGGTCATTTACCGGTCCTTAAAAGACTGTC
TAAAGATCGGTcccattttcaggtactttaaatcgcttggggagtCATAT
ATATTGCATGCCTTCTTATTGGATTTATTAGCTCTCAGAAATAAATATCA
CTTATCTCAAGTAGATAAATTGTGATATCTAATGAAAGGACATTCAATAT
CTGCTTTAATATCTTGTTTCAATATTTATCATAAATCTTAACAATCAGAT
ATTATTTTTATACGGGTAAAATACAAAGTCTAgaggtgttttttttattg
ccATATTATTGATATTATTCATGTCTGAATTATTTGAAAGGTGTTTCTTC
ACTACAAAAAATGTCAATGTTATCAGGCTTGCATACAcctaaatttagaa
atattattaTGCTGTCAAGAATATGTGAAATTTTATTATACATATAATTG
ACTTTAAGGTATACACTAAGCATATTTGTACATGTAGAAAAACTATGACT
TGGGTTAATTTGAATTGGCTTGATGCTGCTATGGAAGAAGCAAAACAGGG
CTTACGTGAAGGTGGGATTCCAATTGGAAGTGTTCTTGTTGATCCTGAAA
CTGGAAATATTGTAGCACGAGGTCACAACCGTAGAATTCAAAATGGTGAT
CCAACTGCACACGCTGAGATGGAATGCTTCAAAAATGCAGGGCGAAGAAA
GGATTGGCATAAGCTGGTTTTAGTTTCTACCTTGAGTCCCTGTCCAATGT
GTAGTGGCACAGCCATTTTGTACAAAGTTCCCCGCATCATTGTTGGAGAA
AACATAAATTATACATCGCCTGCTGAGAAATGGCTGACAGAAAGTAAAGT
TACGGTGCATTTGGAACAAAATAAAGAATGTATTGACATGatggaaaatt
ttatcaaaactaaaCCTGGACTGTGGAATGaagatattcatgatatttga
aaaaaaatttgcttatTTTTCCAACTATTGAGAAAAGTCTGGTTGTTCAA
AGTACAGGATACACAGGATtcctaaaatattattttgaaaacaaactcgc
acatttttgtattattactgtaattattttccaatttttagtCAGCCCAG
GTGACTCTTCAAATCAGttcgacgatttttttcccgctggtcTTCGTTAA
GACTTTAAGTTTTAATTCcaatttcggattattttcgggaaaCAGGATTT
CGGAATTACTTAGCGCGCGAAAATAATTATTCTTAgtgcgaaaataattt
tttcttagtaaGATAAAATAGGACGAGAAAAACACATAACATAAAAAGAC
GCGTATaattaataataagaaaaaaagaaaaaa Run BLAST on NCBI protein sequence of TCONS_00050435-protein >TCONS_00050435-protein ID=TCONS_00050435-protein|Name=TCONS_00050435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MTWVNLNWLDAAMEEAKQGLREGGIPIGSVLVDPETGNIVARGHNRRIQN
GDPTAHAEMECFKNAGRRKDWHKLVLVSTLSPCPMCSGTAILYKVPRIIV
GENINYTSPAEKWLTESKVTVHLEQNKECIDMMENFIKTKPGLWNEDIHD
I Run BLAST on NCBI transcript from alignment at scaffold_171:115792..117556- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050435 ID=TCONS_00050435|Name=TCONS_00050435|organism=Clytia hemisphaerica|type=transcript|length=1765bp|location=Sequence derived from alignment at scaffold_171:115792..117556- (Clytia hemisphaerica)
CCGGTCCGGGCCGCTAGTTAGTGATTTTTAGTAACGATTACATGAAAAAA
TTGTTGTAAAAGGATGTCGACTGGGCGATCGGGGCCGGTCTGGGGCCGGT
CTAGGACCGGACGCTTCGCAGCGGCAACTAAATTAACTAGACTCGTAGCG
GCCTTTTAGTAAATTTTTACCGGTCATTTACCGGTCCTTAAAAGACTGTC
TAAAGATCGGTCCCATTTTCAGGTACTTTAAATCGCTTGGGGAGTCATAT
ATATTGCATGCCTTCTTATTGGATTTATTAGCTCTCAGAAATAAATATCA
CTTATCTCAAGTAGATAAATTGTGATATCTAATGAAAGGACATTCAATAT
CTGCTTTAATATCTTGTTTCAATATTTATCATAAATCTTAACAATCAGAT
ATTATTTTTATACGGGTAAAATACAAAGTCTAGAGGTGTTTTTTTTATTG
CCATATTATTGATATTATTCATGTCTGAATTATTTGAAAGGTGTTTCTTC
ACTACAAAAAATGTCAATGTTATCAGGCTTGCATACACCTAAATTTAGAA
ATATTATTATGCTGTCAAGAATATGTGAAATTTTATTATACATATAATTG
ACTTTAAGGTATACACTAAGCATATTTGTACATGTAGAAAAACTATGACT
TGGGTTAATTTGAATTGGCTTGATGCTGCTATGGAAGAAGCAAAACAGGG
CTTACGTGAAGGTGGGATTCCAATTGGAAGTGTTCTTGTTGATCCTGAAA
CTGGAAATATTGTAGCACGAGGTCACAACCGTAGAATTCAAAATGGTGAT
CCAACTGCACACGCTGAGATGGAATGCTTCAAAAATGCAGGGCGAAGAAA
GGATTGGCATAAGCTGGTTTTAGTTTCTACCTTGAGGTATACCTTTAATT
TTAAATGATCATCAGAGCCAGATCACATGATTTCTGCAGTCTCTCACAAG
ATTTTTTTCTAGTTAGATTCTTAAATTGAAGACTTTTTTTGCACCAAAAG
ATATCCCTTGTTTATGTGAGAAGCCCAATAGGAGGCAATAAGTTGTTACT
TTTTTATTCCACAGTAAATACATGTTGTGTAAAAGTTGTGCTGCCTATGA
GAGAAATATCTAAATTTCAGATTTCAGCTTAGTTTTTATTTTCTTTGAAA
TATTGGTTTGTTCTCTAGTCCCTGTCCAATGTGTAGTGGCACAGCCATTT
TGTACAAAGTTCCCCGCATCATTGTTGGAGAAAACATAAATTATACATCG
CCTGCTGAGAAATGGCTGACAGAAAGTAAAGTTACGGTGCATTTGGAACA
AAATAAAGAATGTATTGACATGATGGAAAATTTTATCAAAACTAAACCTG
GACTGTGGAATGAAGATATTCATGATATTTGAAAAAAAATTTGCTTATTT
TTCCAACTATTGAGAAAAGTCTGGTTGTTCAAAGTACAGGATACACAGGA
TTCCTAAAATATTATTTTGAAAACAAACTCGCACATTTTTGTATTATTAC
TGTAATTATTTTCCAATTTTTAGTCAGCCCAGGTGACTCTTCAAATCAGT
TCGACGATTTTTTTCCCGCTGGTCTTCGTTAAGACTTTAAGTTTTAATTC
CAATTTCGGATTATTTTCGGGAAACAGGATTTCGGAATTACTTAGCGCGC
GAAAATAATTATTCTTAGTGCGAAAATAATTTTTTCTTAGTAAGATAAAA
TAGGACGAGAAAAACACATAACATAAAAAGACGCGTATAATTAATAATAA
GAAAAAAAGAAAAAA Coding sequence (CDS) from alignment at scaffold_171:115792..117556- >TCONS_00050435 ID=TCONS_00050435|Name=TCONS_00050435|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_171:115792..117556- (Clytia hemisphaerica)
TCCCTGTCCAATGTGTAGTGGCACAGCCATTTTGTACAAAGTTCCCCGCA
TCATTGTTGGAGAAAACATAAATTATACATCGCCTGCTGAGAAATGGCTG
ACAGAAAGTAAAGTTACGGTGCATTTGGAACAAAATAAAGAATGTATTGA
CATGATGGAAAATTTTATCAAAACTAAACCTGGACTGTGGAATGAAGATA
TTCATGATATTTGAATGACTTGGGTTAATTTGAATTGGCTTGATGCTGCT
ATGGAAGAAGCAAAACAGGGCTTACGTGAAGGTGGGATTCCAATTGGAAG
TGTTCTTGTTGATCCTGAAACTGGAAATATTGTAGCACGAGGTCACAACC
GTAGAATTCAAAATGGTGATCCAACTGCACACGCTGAGATGGAATGCTTC
AAAAATGCAGGGCGAAGAAAGGATTGGCATAAGCTGGTTTTAGTTTCTAC
CTTGAGTCCCTGTCCAATGTGTAGTGGCACAGCCATTTTGTACAAAGTTC
CCCGCATCATTGTTGGAGAAAACATAAATTATACATCGCCTGCTGAGAAA
TGGCTGACAGAAAGTAAAGTTACGGTGCATTTGGAACAAAATAAAGAATG
TATTGACATGATGGAAAATTTTATCAAAACTAAACCTGGACTGTGGAATG
AAGATATTCATGATATTTGAATGACTTGGGTTAATTTGAATTGGCTTGAT
GCTGCTATGGAAGAAGCAAAACAGGGCTTACGTGAAGGTGGGATTCCAAT
TGGAAGTGTTCTTGTTGATCCTGAAACTGGAAATATTGTAGCACGAGGTC
ACAACCGTAGAATTCAAAATGGTGATCCAACTGCACACGCTGAGATGGAA
TGCTTCAAAAATGCAGGGCGAAGAAAGGATTGGCATAAGCTGGTTTTAGT
TTCTACCTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050435-exon-scaffold_171-1575043694:116671..117556 | TCONS_00050435-exon-scaffold_171-1575043694:116671..117556 | Clytia hemisphaerica | exon |
| TCONS_00050435-exon-scaffold_171-1575043694:115792..116388 | TCONS_00050435-exon-scaffold_171-1575043694:115792..116388 | Clytia hemisphaerica | exon |
| TCONS_00050435-exon-scaffold_171-1510915933:116671..117556 | TCONS_00050435-exon-scaffold_171-1510915933:116671..117556 | Clytia hemisphaerica | exon |
| TCONS_00050435-exon-scaffold_171-1510915933:115792..116388 | TCONS_00050435-exon-scaffold_171-1510915933:115792..116388 | Clytia hemisphaerica | exon |
| TCONS_00050435-exon-scaffold_171-1491911889:116671..117556 | TCONS_00050435-exon-scaffold_171-1491911889:116671..117556 | Clytia hemisphaerica | exon |
| TCONS_00050435-exon-scaffold_171-1491911889:115792..116388 | TCONS_00050435-exon-scaffold_171-1491911889:115792..116388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:115792..117556 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002125 | CMP_dCMP_dom |
| IPR016193 | Cytidine_deaminase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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