TCONS_00050421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050421
Unique NameTCONS_00050421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050421 ID=TCONS_00050421|Name=TCONS_00050421|organism=Clytia hemisphaerica|type=transcript|length=903bp
TGGAACCCATCAGTTTTGCAATGAAATTCTTGAAACTGGAACCCATCAGC
TTTGCAATGGAATTCTTGAAACTGGAACCCATCAGCTTTGCAATGGAATA
GTATCAATATGAAGCGTGGAATCCGTATATATCTATCCTGATCATTTTAT
GTTTACGTGGTAGAGGTTGTTTGTGGTTTAGTTCTTTATCCTTCAGAATG
GCATACTTTTATTTGGCACTGTTTTCCCGGAATTCCCTTTTGTGATTATT
CATTTGGGGAGTTTTTGTCAATGATGTCTACAATAATTGTCATATTGTTT
GTTTGTGTGCAAGCCAACATTTTGAATTCTTGAAACTGGAACCCATCAGT
TTTGCAATGGAATTCTTGAAACTGGAACCCATCAGCTTTGCAATGGAATT
CTTTAAACTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAAC
CCATCAGCTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCA
ATGGAATTCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAA
ACTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCA
GCTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCAATGGAA
TTCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAAACTGGA
ACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCAGCTTTG
CAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCAATGGAATTCTTT
AAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAAACTGGAACCCAT
CAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCAGCTTTGCAATGG
AAT
Run BLAST on NCBI

protein sequence of TCONS_00050421-protein

>TCONS_00050421-protein ID=TCONS_00050421-protein|Name=TCONS_00050421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
FHCKADGLQFKEFHCKTDGFQFKEFHCKADGLQFKEFHCKTDGFQFKEFH
CKADGLQFKEFHCKTDGFQFKEFHCKADGLQFKEFHCKTDGFQFKEFHCK
ADGLQFKEFHCKTDGFQFKEFHCKADGLQFKEFHCKTDGFQFKEFHCKAD
GLQFKEFHCKTDGFQFKEFHCKADGFQFQEFHCKTDGFQFQEFKMLACTQ
TNNMTIIVDIIDKNSPNE
Run BLAST on NCBI

transcript from alignment at scaffold_171:170136..171038+

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050421 ID=TCONS_00050421|Name=TCONS_00050421|organism=Clytia hemisphaerica|type=transcript|length=903bp|location=Sequence derived from alignment at scaffold_171:170136..171038+ (Clytia hemisphaerica)
TGGAACCCATCAGTTTTGCAATGAAATTCTTGAAACTGGAACCCATCAGC
TTTGCAATGGAATTCTTGAAACTGGAACCCATCAGCTTTGCAATGGAATA
GTATCAATATGAAGCGTGGAATCCGTATATATCTATCCTGATCATTTTAT
GTTTACGTGGTAGAGGTTGTTTGTGGTTTAGTTCTTTATCCTTCAGAATG
GCATACTTTTATTTGGCACTGTTTTCCCGGAATTCCCTTTTGTGATTATT
CATTTGGGGAGTTTTTGTCAATGATGTCTACAATAATTGTCATATTGTTT
GTTTGTGTGCAAGCCAACATTTTGAATTCTTGAAACTGGAACCCATCAGT
TTTGCAATGGAATTCTTGAAACTGGAACCCATCAGCTTTGCAATGGAATT
CTTTAAACTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAAC
CCATCAGCTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCA
ATGGAATTCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAA
ACTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCA
GCTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCAATGGAA
TTCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAAACTGGA
ACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCAGCTTTG
CAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCAATGGAATTCTTT
AAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAAACTGGAACCCAT
CAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCAGCTTTGCAATGG
AAT

Coding sequence (CDS) from alignment at scaffold_171:170136..171038+

>TCONS_00050421 ID=TCONS_00050421|Name=TCONS_00050421|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_171:170136..171038+ (Clytia hemisphaerica)
TTATTCATTTGGGGAGTTTTTGTCAATGATGTCTACAATAATTGTCATAT
TGTTTGTTTGTGTGCAAGCCAACATTTTGAATTCTTGAAACTGGAACCCA
TCAGTTTTGCAATGGAATTCTTGAAACTGGAACCCATCAGCTTTGCAATG
GAATTCTTTAAACTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACT
GTAACCCATCAGCTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTT
TTGCAATGGAATTCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTC
TTTAAACTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACC
CATCAGCTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCAA
TGGAATTCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAAA
CTGGAACCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCAG
CTTTGCAATGGAATTCTTTAAACTGGAACCCATCAGTTTTGCAATGGAAT
TCTTTAAACTGTAACCCATCAGCTTTGCAATGGAATTCTTTAAACTGGAA
CCCATCAGTTTTGCAATGGAATTCTTTAAACTGTAACCCATCAGCTTTGC
AATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031926XLOC_031926Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050421-proteinTCONS_00050421-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050421-exon-scaffold_171-1491911889:170136..171038TCONS_00050421-exon-scaffold_171-1491911889:170136..171038Clytia hemisphaericaexon
TCONS_00050421-exon-scaffold_171-1510915933:170136..171038TCONS_00050421-exon-scaffold_171-1510915933:170136..171038Clytia hemisphaericaexon
TCONS_00050421-exon-scaffold_171-1575043694:170136..171038TCONS_00050421-exon-scaffold_171-1575043694:170136..171038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:170136..171038 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197817	0.149552	0.0578814	0.0976793	1.50607	1.46563	1.87124	2.15737	1.33604	1.13511	2.20142	1.06636	0.68612	0.6758	0.058056	0.171391	0.383761	0.05151	0.21737	0.227462	0.181145	0.0876392	0.0586139	0.0675985	1.88064	2.24613	0.171542	0.168805	0.11348	0.142469
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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