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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050448 ID=TCONS_00050448|Name=TCONS_00050448|organism=Clytia hemisphaerica|type=transcript|length=634bp
ctttttcagagcAATGCGGGTCGGTTATTTTAGCCAGCATCACGTGGACG
CTTTATCTTTAAAACAAACAAGTTTAGAATTCTTCAAAAAACGATTCCCA
GGAAAATTGGACGTTGAATACAGAAGTCATCTCGGAAAATATGGTGTGAC
GGGTGACCTTGCAATGCGACCTATATCGAGTTTATCCGGAGGTCAAAAAA
GTCGAGTTGCTTTCGCCTTAATGACATGGCATGAACCAAACTTCTTCATT
CTTGATGAACCTACCAATCATCTGGATATCGAAACGGTGGAAGCCCTCGG
AAAAGCACTACAGAAATTCAATGGCGGAGTCATCCTAGTATCTCACAACG
AACAACTCATACAAATGATCGCGCAAGAGACTTGGTTGTGCGGAGAAAAG
ACTGTCAAACGAATCGATGGAGGTTTCCAAGCCTACAAAAAGACTTTAGA
GGAAGAGTTTAAACGGATTAATGCAATATGAAAATGTTGAGGAAAGtagg
agagagagagagagagaaattacaaaataataGATTTCTAATTTTTGTAT
TAAAATTTCTTGTTTGTTCATTACTCCTCATCTTTCCTACTCCTGATCTG
TTACTAAAAGTACCTTAGGAGTGCCAGAAATCCG Run BLAST on NCBI transcript from alignment at scaffold_172:11917..14650+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050448 ID=TCONS_00050448|Name=TCONS_00050448|organism=Clytia hemisphaerica|type=transcript|length=2734bp|location=Sequence derived from alignment at scaffold_172:11917..14650+ (Clytia hemisphaerica)
ctttttcagagcAATGCGGGTCGGTTATTTTAGCCAGCATCACGTGGACG
CTTTATCTTTAAAACAAACAAGTTTAGAATTCTTCAAAAAACGATTCCCA
GGTATACATAAAGAATCCAGCAGTTTGATATAATTTCAGGAGAGTTCTAT
AATATTGTGTCACAAATCAGGGTTGCCACGTCTGCCGAAAATGTCTGGAA
ATAGTATACCTGTCTGGAAAAAGTCTGGAAATAGAGAAACATAATACTGT
TTTCGCTGTTTCACTGTTAACTTTATTATCTTTGTTAAAGACAACCTTAG
AATTTTGGtttttgcacgtttttttactTGTATAGACTTTGTCACTTACA
AAAAAGTCCGGAAAATATTGGTATTTATACCTAAAGTCTGGAAAAATTTG
gcgattttaagcaaaaatatctggaaaaaattgagatttttgggcaaaag
tctggaattttgaaagtttcctaCCCATGGCAACCCTGCAAATGGTGTCA
TCCATTGCATAAATCAATTTTGTGGAAATTTCGAAGGTTGCATGAAAACT
CATAATCATGCGATTGAATAATCCCTCATTTTAGACTTtcgttttttgtt
atttttggaaCAATATCTTGAAGTTTGAATAGTAAAATTGAGAGGGGCAA
CGGATGTACTAATTCTTCACTTAACTTATTTCAGGAAAATTGGACGTTGA
ATACAGAAGTCATCTCGGAAAATATGGTGTGACGGGTGACCTTGCAATGC
GACCTATATCGAGTTTATCCGGAGGTCAAAAAAGTCGAGTTGCTTTCGCC
TTAATGACATGGCATGAGTAAGTCCTATTGAGCTTCGACTCGGGAGTCTC
TAAATTACGATCAAAATAGCATGAATTCCtttaaattataaaattataaa
tcTTGTTAAAGTAATATGACCCCATAATCATTTTCAGCAATGATATTTCT
ATTCTTGAAACATTACCAAATGATATGTAAAGTAACGAGCTATATTTAGG
TTTTTTCACCTTATCACAATTTTTGCATGTACATTGAATCATATTTGATT
TAACACGTATTGATCTAATGAGATCTCAGTTAGTGGATACTATCTCCACT
TCTTACGTTTGAAAtcatattttctttgatttttcattCAGACCAAACTT
CTTCATTCTTGATGAACCTACCAATCATCTGGATATCGAAACGGTGGAAG
CCCTCGGAAAAGCACTACAGAAATTCAATGTAAGAACTTTTTTCTCTTAC
TCCATCATTGAACTTACTGCTGCTTAGGTTATATAGTCTTTTGCAAAATA
TGATGATACACCTTGCAAATCTACAATAATTCAGACTCCCGTCCCGAAAA
AAAATTGGGTGTAATAGCAGCTCATTTCAAAGAACAACATTGATTTAGGG
AAAGGGAGAAGCTTTTCTTTTTGATTGTAGATGTAAGAGGTTCAATCCCC
TTGAAAAATATAGGAATTGAGTTTCTCTTGAGAGATAGCACAAGAAATTA
ATTTTTCCTTTAAAAATACATGAAGTTCACACAGAAAAGCATAATAAAAA
TATTTCCTCTAAGTAAACTAATTTTTCCTCGTTTATTTATAGGGCGGAGT
CATCCTAGTATCTCACAACGAACAACTCATACAAATGATCGCGCAAGAGA
CTTGGTTGTGCGGAGAAAAGACTGTCAAACGAATCGATGGAGGTTTCCAA
GCCTACAAAAAGACTTTAGAGGAAGAGTTTAAACGGATTAATGCAATATG
AAAATGTTGAGGAAAGtaggagagagagagagagagagagaaattacaaa
ataatagatttctaatttttgtacaaaaatttctTGTTTGTTCGTTACTC
CTCATCTTTCCTACTCCTGATCTGTTACTAAAAGTACCTTAAGAGTGCCA
GAAATCCAAACTAATACTTTAACACGTGCTTTTATAGAGGATTTTTAGGT
TTTACCAAAGTTACGTAACTTATGGAAAATCGCTATTATGGAAGCAAACT
TTTGAAGCTGAAGACGAAATNCGGTGGAAGCCCTCGGAAAAGCACTACAG
AAATTCAATGTAAGAACTTTTTTCTCTTACTCCATCATTGAACTTACTGC
TGCTTAGGTTATATAGTCTTTTGCAAAATATGATGATACACCTTGCAAAT
CTACAATAATTCAGACTCCcgtcccgaaaaaaaattgggtgtAATAGCAG
CTCATTTCAAAGAACAACATTGATTTAGGGAAAGGGAGAAGCTTTTCTTT
TTGATTGTAGATGTAAGAGGTTCAATCCCCTTGAAAAATATAGGAATTGA
GTTTCTCTTGAGAGATAGCacaagaaattaatttttcctttaaaaataca
tgaAGTTCACACAGAAAAgcataataaaaatatttcctctAAGTAAACTA
ATTTTTCCTCGTTTATTTATAGGGCGGAGTCATCCTAGTATCTCACAACG
AACAACTCATACAAATGATCGCGCAAGAGACTTGGTTGTGCGGAGAAAAG
ACTGTCAAACGAATCGATGGAGGTTTCCAAGCCTACAAAAAGACTTTAGA
GGAAGAGTTTAAACGGATTAATGCAATATGAAAATGTTGAGGAAAGtagg
agagagagagagagagaaattacaaaataataGATTTCTAATTTTTGTAT
TAAAATTTCTTGTTTGTTCATTACTCCTCATCTTTCCTACTCCTGATCTG
TTACTAAAAGTACCTTAGGAGTGCCAGAAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050448-exon-scaffold_172-1491911889:11917..12017 | TCONS_00050448-exon-scaffold_172-1491911889:11917..12017 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1510915933:11917..12017 | TCONS_00050448-exon-scaffold_172-1510915933:11917..12017 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1575043694:11917..12017 | TCONS_00050448-exon-scaffold_172-1575043694:11917..12017 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1491911889:12601..12733 | TCONS_00050448-exon-scaffold_172-1491911889:12601..12733 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1510915933:12601..12733 | TCONS_00050448-exon-scaffold_172-1510915933:12601..12733 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1575043694:12601..12733 | TCONS_00050448-exon-scaffold_172-1575043694:12601..12733 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1491911889:13058..13145 | TCONS_00050448-exon-scaffold_172-1491911889:13058..13145 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1510915933:13058..13145 | TCONS_00050448-exon-scaffold_172-1510915933:13058..13145 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1575043694:13058..13145 | TCONS_00050448-exon-scaffold_172-1575043694:13058..13145 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1491911889:14339..14650 | TCONS_00050448-exon-scaffold_172-1491911889:14339..14650 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1510915933:14339..14650 | TCONS_00050448-exon-scaffold_172-1510915933:14339..14650 | Clytia hemisphaerica | exon |
| TCONS_00050448-exon-scaffold_172-1575043694:14339..14650 | TCONS_00050448-exon-scaffold_172-1575043694:14339..14650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_172 | supercontig | scaffold_172:11917..14650 + |
Blast
BLAST of TCONS_00050448 vs. Swiss-Prot (Human)
Match: ABCF3 (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 1.268e-61 Identity = 88/153 (57.52%), Postives = 122/153 (79.74%), Query Frame = 2
Query: 8 RAMRVGYFSQHHVDALSLKQTSLEFFKKRFPGKLDVEYRSHLGKYGVTGDLAMRPISSLSGGQKSRVAFALMTWHEPNFFILDEPTNHLDIETVEALGKALQKFNGGVILVSHNEQLIQMIAQETWLCGEKTVKRIDGGFQAYKKTLEEEFKR 466
R +++GYFSQHHV+ L L +++E ++FPG+ + EYR LG+YG++G+LAMRP++SLSGGQKSRVAFA MT PNF+ILDEPTNHLD+ET+EALG+AL F GGVILVSH+E+ I+++ +E W+C V R++GGF Y+ L+E+F+R
Sbjct: 553 RNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQEQFRR 705
The following BLAST results are available for this feature:
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