TCONS_00050493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050493
Unique NameTCONS_00050493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050493 ID=TCONS_00050493|Name=TCONS_00050493|organism=Clytia hemisphaerica|type=transcript|length=917bp
CAGCTCCACAAAGTAAAGTTCTGCAGTTCAttttttggcgcgaaaactgc
TGTACTGATGGTTGGTTCTTTTCGCGCACCCTCGTTCCAGGTATCATATC
TACACTTTCCCCGGGGGGgaggggcactcaaggtaaatgacctaccggac
gtgcggcgcttaagggtaggtttttcgaggtTCTGACAAAGCCTAGGTAC
GCCCAGGTGCACTGTAAGGCAAGGGTAGgtaatttgagaaaaatgcaGAT
GCAGGATATTAGTTGAATCTAAGACATCTTGATCCTCTAAGTAAGTGAAA
ATGTTAGAAAAATAAGAGAGAACACCAGTATACACATCGCGCCACAATCT
TTCAACTCTCTGATTATGAGTACTCTTTCCAGTAATCATACTTTTCCTAC
CAACCCCTCTTCTCTCGATCATATANAAGAGAGAACACCAGTATACACAT
CGCGCCACAATCTTTCAACTCTCTGATTATGAGTACTCTTTCCAGTAATC
ATACTTTTCCTACCAACCCCTCTTCTCTCGATCATATAATCAGCCaccaa
aacattttctttcccTTTGTCCGCACGCACTCTGCTGGGCAAACCATACT
CTTCAACAGAAGCTTGAAAGCAACTCAAAATAGTTAAAGCCTTGTTGTTA
TTGGTGCAATACAAACCTACAGGTAAACGACTAAAACCGTCAACTATACC
AGTTATGATAAAATTCCACCTTACAAGTTTATCTGTAAGCCCTAGTGACT
TGAAATCTTCCTTTGATAACATCGAAATTATATCAGATGTGATGTTTTCA
TCTTTGAAATTCTGAACGTAATTAATTATGTAAGCCTAATACTTGCAGAA
TGGTATGTAACTTTTGGTCAgccatcttttaaaaaaagacttcagaaatt
tttttctgaaactaGCC
Run BLAST on NCBI

protein sequence of TCONS_00050493-protein

>TCONS_00050493-protein ID=TCONS_00050493-protein|Name=TCONS_00050493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MLSKEDFKSLGLTDKLVRWNFIITGIVDGFSRLPVGLYCTNNNKALTILS
CFQASVEEYGLPSRVRADKGKENVLVADYMIERRGVGRKSMITGKSTHNQ
RVERLWRDVYTGVLSXI
Run BLAST on NCBI

transcript from alignment at scaffold_175:13676..14592

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050493 ID=TCONS_00050493|Name=TCONS_00050493|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at scaffold_175:13676..14592 (Clytia hemisphaerica)
GGCtagtttcagaaaaaaatttctgaagtctttttttaaaagatggcTGA
CCAAAAGTTACATACCATTCTGCAAGTATTAGGCTTACATAATTAATTAC
GTTCAGAATTTCAAAGATGAAAACATCACATCTGATATAATTTCGATGTT
ATCAAAGGAAGATTTCAAGTCACTAGGGCTTACAGATAAACTTGTAAGGT
GGAATTTTATCATAACTGGTATAGTTGACGGTTTTAGTCGTTTACCTGTA
GGTTTGTATTGCACCAATAACAACAAGGCTTTAACTATTTTGAGTTGCTT
TCAAGCTTCTGTTGAAGAGTATGGTTTGCCCAGCAGAGTGCGTGCGGACA
AAgggaaagaaaatgttttggtGGCTGATTATATGATCGAGAGAAGAGGG
GTTGGTAGGAAAAGTATGATTACTGGAAAGAGTACTCATAATCAGAGAGT
TGAAAGATTGTGGCGCGATGTGTATACTGGTGTTCTCTCTTNTATATGAT
CGAGAGAAGAGGGGTTGGTAGGAAAAGTATGATTACTGGAAAGAGTACTC
ATAATCAGAGAGTTGAAAGATTGTGGCGCGATGTGTATACTGGTGTTCTC
TCTTATTTTTCTAACATTTTCACTTACTTAGAGGATCAAGATGTCTTAGA
TTCAACTAATATCCTGCATCtgcatttttctcaaattacCTACCCTTGCC
TTACAGTGCACCTGGGCGTACCTAGGCTTTGTCAGAacctcgaaaaacct
acccttaagcgccgcacgtccggtaggtcatttaccttgagtgcccctcC
CCCCCGGGGAAAGTGTAGATATGATACCTGGAACGAGGGTGCGCGAAAAG
AACCAACCATCAGTACAgcagttttcgcgccaaaaaaTGAACTGCAGAAC
TTTACTTTGTGGAGCTG

Coding sequence (CDS) from alignment at scaffold_175:13676..14592

>TCONS_00050493 ID=TCONS_00050493|Name=TCONS_00050493|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_175:13676..14592 (Clytia hemisphaerica)
ATGTTATCAAAGGAAGATTTCAAGTCACTAGGGCTTACAGATAAACTTGT
AAGGTGGAATTTTATCATAACTGGTATAGTTGACGGTTTTAGTCGTTTAC
CTGTAGGTTTGTATTGCACCAATAACAACAAGGCTTTAACTATTTTGAGT
TGCTTTCAAGCTTCTGTTGAAGAGTATGGTTTGCCCAGCAGAGTGCGTGC
GGACAAAgggaaagaaaatgttttggtGGCTGATTATATGATCGAGAGAA
GAGGGGTTGGTAGGAAAAGTATGATTACTGGAAAGAGTACTCATAATCAG
AGAGTTGAAAGATTGTGGCGCGATGTGTATACTGGTGTTCTCTCTTNTAT
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031974XLOC_031974Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050493-proteinTCONS_00050493-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050493-exon-scaffold_175-1491911889:13676..14592TCONS_00050493-exon-scaffold_175-1491911889:13676..14592Clytia hemisphaericaexon
TCONS_00050493-exon-scaffold_175-1510915933:13676..14592TCONS_00050493-exon-scaffold_175-1510915933:13676..14592Clytia hemisphaericaexon
TCONS_00050493-exon-scaffold_175-1575043694:13676..14592TCONS_00050493-exon-scaffold_175-1575043694:13676..14592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_175supercontigscaffold_175:13676..14592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914539	1.00417	1.4474	1.05889	1.91321	0.975286	1.27078	1.29444	0.769738	1.8689	0.751263	0.94995	0.84692	1.02627	0.762624	1.83755	2.74147	1.26429	1.19781	1.1383	1.04778	1.34486	0.911468	1.80054	0.0932591	0	3.07889	2.53419	2.60206	2.40037
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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