TCONS_00050868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050868
Unique NameTCONS_00050868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050868 ID=TCONS_00050868|Name=TCONS_00050868|organism=Clytia hemisphaerica|type=transcript|length=1109bp
GTAATTTTGAGTTGCCGGCGGCCGGCCGGGGTAGTCAAATAAAAATTACG
GGTAGTTGGCTAAGCGGAGCTGGTTTGTTTTGTTCTGCGAAATACAACGA
TTTCGTGTTTTGTTTTCACGAATGCAATCTTTTATGTCGGCCTTTTCCCG
TTGGGTTGTCAGTTAAAAAAATGGCAAAACCACACGCATCCCGAAACTCG
ACCCTTCCCGGTGGTGTCAGCCGTCTTGGCAGAGCTACAGTTTACAAAAA
GAAAGCTCTCTACAAGCGGAAAAAGGTTGCAACTAAACCAGCCGCCAAAG
ATGCAGCTACCACTAAAGTGAAGCAAGTTGGAGGTGACAAAAATGGTAAA
ACACGTACTGTTCCATTACAAAAGGAATCTAGATTCTACCCAACAGAAGA
CATCAAAAGACCCTTGAGAAACAGGAAAACACAACGTCCATCCAAACTGC
GACAAAGTTTGACCCCAGGAACTGTCTGCATTTTGCTTGCTGGCAGACAT
CGTGGAAAACGTGTTGTATTACTCAAACAATTGGACAACTCTGGTCTCCT
GTTGGTTACTGGTCCATACAAAGTTAACGGTGTTCCACTCAGACGTGTTC
CAGCATCTTACGTCATTGCAACTCGAACTAAAGTTGATGTATCCGGAGTT
AAATTGTCTGATAAAATTAATGACACTTTGTTCAAACGCTCCAAGAAAGC
CAAAAGATCATCAGACGCTATGTTCGAAGAATCAGCAGCTggATACAAAG
TATCAGACGAACGTAAATCGGAACAAGAATCCGTCGATACTGCAGTTCTC
GCTGCCATTGGCAAAGAACCACAATTGAAAAGATACATGTCACAACTTTT
CACACTCAGGAAAGGCCAGTTTCCTCATGAAATGATCTTCTAAGAAGata
attttctgtaaaaaaaactttccgAGACTTTTTTCTTCATCCCGACAGTT
AACACTTTTTAAAAGACGTCGACCGTATAAAAAGTGAGATCTGACCTCTt
taaatagacgatatcggctttagataaatgcaatgcattctggtttctag
ggactctcaaaggaattataatctattataattgatctattataattcct
ttgagagtc
Run BLAST on NCBI

protein sequence of TCONS_00050868-protein

>TCONS_00050868-protein ID=TCONS_00050868-protein|Name=TCONS_00050868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
NFELPAAGRGSQIKITGSWLSGAGLFCSAKYNDFVFCFHECNLLCRPFPV
GLSVKKMAKPHASRNSTLPGGVSRLGRATVYKKKALYKRKKVATKPAAKD
AATTKVKQVGGDKNGKTRTVPLQKESRFYPTEDIKRPLRNRKTQRPSKLR
QSLTPGTVCILLAGRHRGKRVVLLKQLDNSGLLLVTGPYKVNGVPLRRVP
ASYVIATRTKVDVSGVKLSDKINDTLFKRSKKAKRSSDAMFEESAAGYKV
SDERKSEQESVDTAVLAAIGKEPQLKRYMSQLFTLRKGQFPHEMIF
Run BLAST on NCBI

transcript from alignment at scaffold_19:46031..56595+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050868 ID=TCONS_00050868|Name=TCONS_00050868|organism=Clytia hemisphaerica|type=transcript|length=10565bp|location=Sequence derived from alignment at scaffold_19:46031..56595+ (Clytia hemisphaerica)
GTAATTTTGAGTTGCCGGCGGCCGGCCGGGGTAGTCAAATAAAAATTACG
GGTAGTTGGCTAAGCGGAGCTGGTTTGTTTTGTTCTGCGAAATACAACGA
TTTCGTGTTTTGTTTTCACGAATGCAATCTTTTATGTCGGCCTTTTCCCG
TTGGGTTGTCAGTTAAAAAAGTATGTGAACTGCATCCATATTTTTCTTGA
CCATATCTAATTCATTCTACTGTATTGATACTGGAGATGATTGTTGAAGG
ACTATTCTTTGATTTTTGTGCCTTATTTTTTGACTGAAAGTTTTCATGGT
CAATTTGTACCTGTCTATCGTCGGGGCACTCTAATTGTGTTAATTGCTAA
ATCTTCCTTGGCTTTTCCTTTCAGATGGCAAAACCACACGCATCCCGAAA
CTCGACCCTTCCCGGTGGTGTCAGCCGTCTTGGCAGAGCTACAGTTTACA
AAAAGAAAGCTCTCTACAAGCGGAAAAAGGTTGCAACTAAACCAGCCGCC
AAAGATGCAGCTACCACTAAAGTGAAGCAAGTTGGAGGTGACAAAAATGG
TAAAACACGTACTGTTCCATTACAAAAGGAATCTAGATTCTACCCAACAG
AAGACATCAAAAGACCCTTGAGAAACAGGAAAACACAACGTCCATCCAAA
CTGCGACAAAGTTTGACCCCAGGAACTGTCTGCATTTTGCTTGCTGGCAG
ACATCGTGGAAAAGTATGTTTAATTTCTGGCTGCCTTTTACATTTCTAAA
CAAGTGCAGATCAATGAGAAATCGTTTTGTTACACGTGTAACACAAAATC
TTGGTTCTTACATAGTTTATATGGATATGGGATGGAAATAAATTGGAATC
TTTGTCTGTTGTCATAACATAGTTGGTTgtagaaaaattgacaatttaca
ATTTATGAACttaaggcggtcatcgaaaaattgttctatttgtgtcaccc
gcccgcatcaaatgTTCCGCTAATTTTCCGGTGTgcagatgcggaaaaaa
atctgcctgcgaaaagcaatttgttcttttaaagtatagcttttttctca
attgctctgacgaccatcaaaaaattgttttgctcgcgttaccacccgcc
cctgacagtcaggaacagtcgccttattaggagacgcctcctaatcagga
gacgggtgtaattatctcgtgaacgagcaaactgcgcatgatttgattgc
tcccaatggaaagagcacaaaaaattgattccatatggtgattttcagaa
aaatccaccggtggaatcaatcacaattctaataatccataagaaccaat
cagaagtatctgtcttctgaacaaaagcgtctcaaaaagaaaaatggcga
acatgaaaaaaatcaagaggggcttccttgtagtgctttatattaggatt
gtgattgattgcaccgagaaattttgatactttttttaaaacttaaccaa
ttcgaggctgctctttccattaaaactagtttcaaaatgcgcagaaaagc
ctaaagcccttaaaattgagatcaaagttttatgtctcctaattaggaga
cgggtctcctaatcaagcgaccccaagcgacctacatgtctcctaatcag
cctaataaggcgactgttcctgactgcCTGAGTTACTggcatgattaaaa
aaaaccgggaatgtttttgacagcccgtccgcccgcatgcatttttaaca
cccgttgcgacgtaaacagattttttttttcgatgaccgcctaagcTTGT
CAGAAATGGCTCTGGAAAAAAATTAGATCCACTATTGATTTTAGGTGAAT
ATGTTTGtttccagacggtactaatcatTCAATTTCGATTATCGAAGTAA
TTGAACTACCACTTCGATTGATtaacaattgaattttcagtaccaaaatt
ttaaaaaacttgTGAGCATCTGATCACTTtcttaggcggtcatcgaaaaa
ttgttctattcgcgtcacccgcccgcatcaaattttccgctgattttccc
gtgcggagatgcggaaaaaaatctgggaaaagcaatttgttcttttaaag
tatagcttttttctcaattgctcctgacgaccatcgaaaaattgttttgc
tcgcgttactccccgcccctgagttactggcgtgatttaaaaaaacccgg
gaatgtttttgaccgcccgtccgcccgcatgcatttttaacacccgttgc
gacgcgaacagagcattttttcgatgaccgccttagGGGAGCCGttcata
ttcatttgacaacagAAAATGTCAAATTGACGTTAATAGGGGGTGGGGGG
TTTTCAGAAGTTAGGTTTGACattataagaaatcaaaggtactgtatacc
gtcaactgctctaacttgggactatctgacaaaacatgggacggcaattc
ggccaccatttcaacgaacctccaaagtcatttgatttgagttttaagga
acggcatatttaaaaatacacaatttctttccattttacagtaagtgaaa
taCAGACCAGATTAGATATGCAaaagtcccatgttttgaccaatcgtccc
aagttagaacagttgacggtacctttttgtgaaaatcttgaATATTTGTT
ACCACCAATCCACACTATACTTTTTaatctgtcaaaaatatatTGGTGGT
GGTACGCATAGAGCACAGCACAGACGTAGCGCCAAGTGGAGCTTTTTATT
TCTTAttaaataaaggtcattagttaAAGGAACACATACACGCACGGGTA
CAACCAAGTACAAACTTTGCGAGGGGAAAACTTTGATGAGAAAATGGCAA
CATTTTTTGGTATACATCGCTTGACGTTATCTGTGGGGGTGGGGGTTCAG
AGGATAatgtcaatttgacgttatgcattgtcaaatgaatatggaccgAT
CCCCTTAAACAAGGGGACTTGATAACTGTTTGAGtgctttgattgttatt
gattacttcgataaccaattaaATTACCTCCACACTAATATCGTGCATTC
TGATTGGTctgagaaaacaaaaaagtgatTGCGTATGAATCGCATGTTTT
TTAATTCACGAGACAAACTTAGTTTCAGATTATTCTGATGCGTCGTTTTA
GGAAACACATTTGATAAAATTGAGggtattcaatatgattgaAGGTAATC
GAAAAGTAATCGTAATGGCCAAAGAAATCAGAAGCAGTTGAAGAGAGTGC
CATTATCTGGAATCAAGCGAGCATATGATCGACAATAAAATAGGTGGTCA
CTGACCGCCATCATCCGTCATTGTTGATTACTTTGATCACAATTGATTAG
TACTGTCTGGTTGTTTAAACTATAAACAAagtggattttttttctttacc
aTTTCTGAGAAGTCTGAATTTACATGAAAGGTGgcatataatttttgatt
ttctgcgttttcaggcaaaataccacgtgatagaactcttcaaagtgagc
aaaaaaatgtattacaacaaaGTCGCAACTTTTCTTGATCAATAGTTATG
GTcttttttgttgtcaaaaagtgttataattttgcataaattaattttgc
ataaattatacATATTGTGGGGAAATTCTGTTTTCGATCGTTTTTTGACc
acaaaaacgcccataactttAAAGAGCTCTAGCACGTGGTATagatcttt
tttgattttgaggaccccaaaaatcatgaattactcaaaaactgcgggtt
taagcttggtaacatttaaatttggaatcagcaccctcaactTGACTAGG
AAACatagggcttttccagaaaaaatccgttcatggggggtggaggatat
attattttttcatgaattactcctggatatttcgatttttaaccccatgg
acacgggttatacccctggacaaacatcaaattaaccccgtggacacaaa
aaattacccctggacattggaatttaccccctggacattgcaattttttg
gtattttttcaatacccctggaaaattcatcctccaccccccatgaacgg
attttttctggaagagcccatatcaaaaagttggtcacggacattttaaa
ttttttcttaattttttaaacttgagCAATTCACTGGCCACAGCCTCATA
CTTCTCATATTAAGGGGCCACTCACATATCAATGTTTCCCGcaactaacg
tcaaattgacgcaaGAGGGTGGGATGGTCAGAGGCAGTAGCGTTACGAAA
ATCAAGTCATTCATTGATTTTCAGGGCGGATTGAATTCTGATTTTTCAGT
CAgatatttttcactttgttaACTACTAAATTGCTATGCATAGTTTAATC
ATCTACTTTTCATGGCTTTTACACTAAAAAATTGGTGTCAAGGCAAGACA
AGCCAATTGAGTTAAAAGTTAAAGCTAAGATTAAAATTacaatttcattg
atttttggtGGCTGACGCTGGGGTAGGGGGTGGGAGATATGGGAGTTATG
GGAGAAATAGATATGTGAGTGGCCCTTATAAAAGATCAACTAAAACCATC
AAAAATCAGACTTGTCATGAAAAACCACGATTGGACGTTTGGGAGGTGGG
AAAGAAATTTCGCCCAGAAATATTAATTTTGGAGAAGTTCATTCCATGCC
AAATGTTACTCTGCCATGTTTCTTTTTAACTGCCTTAAATTTTTGCATAC
AGCTGGCGTTTTCAGCTGCTGCTATTAATTACAAATATTAATATAAACTG
TAGGTTGTAACAAAAAAGCAAGACGGCCGCTAAAACAGCAATGGAATATT
TACAGTGATTAAGGGTTAAAGATAGGTTTAATTGCCATGACAACAATTTA
AAAGCAAGGGGGTGAGAGTTTGTAATAAAATGGCCATTCAATTTATTTGT
GGTAAGTAAGTCTGAGTTGGATGGCTCCCTAAAAGGAATGTGCAAAATCA
CAAACAGCTTCAGAAGGGTTAGCTTTTATAAAGTTAAAAAAGTAAACATT
GAAAGAAATCTGACAAATTGAAGAATTATCACTTTGATGTTTGAAACCCT
CAAGGAAGTATGAATGTCATTTTTctaatggaaaaaaaaataaaccaagc
tctttgttttcaataatgTTTATTTCCTCTTTTAGCGTGTTGTATTACTC
AAACAATTGGACAACTCTGGTCTCCTGTTGGTTACTGGTGAGCTTAATTA
TTATAGTGTATTTTTCCTCGCACTTCCTAAGATCAAATCCTCAAATTTCT
TTACTATTTAATAAGTAGGGGTAGGGGGTAGagtaacttttttggggggt
atcttcagatcttcttcgcctggtgttttttctgttccatataatgatag
aagacatttaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaa
ttttttaaatgtcttctatcattatatggaacagaaaaaacaccaggcga
agaagatctgaagataccgaCTTTTACCCCCTACCCCTAATTTAAGCAGT
ATTGAATGTGTCcttgatttgaaaattcaaagaaagTGAACCCTTTCAGG
TAAAATCTAAAATAACATGGATATCGTTGGTTCGTTTTAGGTCCATACAA
AGTTAACGGTGTTCCACTCAGACGTGTTCCAGCATCTTACGTCATTGCAA
CTCGAACTAAAGTTGATGTATCCGGAGTTAAATTGTCTGATAAAATTAAT
GACACTTTGTTCAAACGCTCCAAGAAAGCCAAAAGATCATCAGACGCTAT
GTTCGAAGAATCAGCAGCTGTAAGAtatttatttgttgttttttaattct
ttttaattttcactgTGCTCTTTAAAGAAGAGTGTCTTGAGATGATGGAC
CTTCAGGCGATGAAGACTATCTACATAAGgaaaaattttacaagaactaa
ttttggtgaatttggcTAAATAAGTTCTTGcctaaaattcatcaaaatag
ggcaaaatagggggacaagctggagtttttacaagtttgatttggttggt
cattaacctgtaataaaacaattttgttactttttctaaagaacgcgtca
tctctattacttcaaataaccaattagtgaagtctcttgtaCAAAAGTTA
CCTTaggagcggtcattaagtatagCATATACCGGGGTGGAGGggatttt
tcgtttttgttttcgtACCCTatcaaaaattctcaaaaaaatttcaaacc
ctaCCAAAAAGTGGGATGAAATTTTCATACCCTACCAGCCGCATAGACAT
GAAACAACACTTTCATCTAAATGCGATGTTTGGGCTTCAACAAAGCTAGC
GTATAAAGGCAATGTGGGGGCAATGTATATTTCACACCCCAACTTAAACT
ATACACACACCTTAAAGGATCATTTTTGCAAGAGAGCTGTTCTTTAAATA
CCTGGTAACTTATGCTACAAGtagaattgatggttttgaagaaacTAATT
ATAGAATCAAGTAACTACTTGTAAACTAGTTGGTTTTGAAGATTCTATTT
GTAAGATAGAtggttttgaggattttacgtTTAACAAATTGATTGTTTGG
AAGATCCTACTTCTAGAATTGATGATTTGAAGATCCTGCATTTAATTAAA
CACGATGGGTTTGAAGATCCTATTTGtagaattgatggttttgaaaaTCC
TATTTTTAAAATCGATGGGTTTGAAGAtgatattttaaaaattgatggtt
ttgaagatcCTAAGTTGTAGAAGTGATGGTCTTGaaaattcttgttgtag
aagtggtcttgaaaattcttgttgtagaagtgATGGTCTTAcaaattctt
gttgtagaagtgatggtcttgaaaattcttgttgtagaagtgATGGTCTT
GAAAATTCTTGTTGTGGAAgtgatgattttgaaaattcttgttgtagaag
tgATGGTCTTGAAAATTCTTGTTGTGGAAGTGATGGTCTTGaaaattctt
gttgtagaagtggtcttgaaaattcttgttgtagaagtgATGGTCGtgaa
gattcttgttgtagaaatGATGGTTTTGAAGATTCTTGTTGTGGAAGTGa
tggttttgaaaattattgttgTGGAAGTGATGGTTTTGAAGatggttttg
aaaattattgttgTGGAAGTGATGGTCTTAAAAATTCTTGTTGTGGAAGT
GATGGTCTTGAAAATTATTGTTGTAGAAGTGATGGTCTTGAAAATTATTG
TTGCCGTTGTTCTGTTGTATGATTGATAGTTTTAAAGATCCTATTTGTAA
AGTTGATGGTTTTGCAGATCCTACTTGGAATAATGGTTTTTAGCATTCTA
CTTGGGAAGttgatggttttgaataatCTGTTTGtaaaattaatcttttt
aaagatcCTTCTTGCAGAATTGATGGCTTTGAAGATCCTACTTGTACAAC
TGATGGATTTGAAAATCCTATATTGTAAAATTTAAGGTTTTGAAGATCCT
ACTTTAAAATTGATGGGTTTTAAGATCCTATTTGTAAAATTGATGGTCTT
GAAGATCTCACTTGTAGAATTAATTGTTTTGAAGATCCTGcttgtaaaat
tgatggttttgaataTCCTACTTGCAAAATTTATGGTTTTTATTTCactt
aattttttattattttccaatttattGAACGTTGGTCTTACATAGTAGGT
ATAGTAATAATTAAATATTAATTCATACCAACTATAGAGAAATTGATTTC
ATGTAAGATTCTGCTTGAGAAGTTGATGGTTTTGAGGCTACTTTACCAGT
AAAATTGATGGTCTTGAAAATCCTGCatgtaaaattgatggttttgcaGA
GCCTAGTCATAGAATTTATGGTTTTGAGGAGCCAATATATAAAATGTTAA
AACACTAAAATTTGGTTTATCGGCCCCACCTCCAAAATTGACTTCTAAAA
GGAAGGTGATTTTCGGAAATCTTTTTATGTAGTATTGATATATGCATAAA
AGTTAGTCATTCTGTAAAATTTTAGACTGAAAGGTCCATTGGTGCCTATT
TTATGAaactttgaagtttttgaaattttgtggtTTACAAGGATATTGGC
GCTTTAAGGCtgataaaatcaaagtttttacaaaaataaagcacagctca
aaagattttcataccctACCTAAAATGAGGGGAAAAGTTTCATGACCTAC
CCAAATCCCTTCCGCCCCGGTATATGttatacttaatgaccgctccctta
tgtgacaaggatcttgtgtcccaaatttcatccaaaaagacccactagat
caaaagttaagggtggtacaggaaaagcccccctcCCCCCTAGGTTCCGA
AccacccctaaaagcctaggtttaAAAGGGTTAAAGGACAACAGAAATTT
AAGTAAAGCCTCAGCTTAAGAAAATAtgtagtcaattttttttttcgctt
cAAAACCtcttaaagtctgtctcaatataatttgcagtggagacaaaaaa
ggctgtaacttttgatagaatttgaagtAGAAAGCAGTTCtgtgcttgtt
aaaaagataatttgcAGTGGAATATATTATCgaaatagaaaaaattcaaa
aaatggaaaaacgaagatgaaaaatgaagaagaagaaaatcaacttcttg
ttaaataatgctatgatcttcattttaatatcagaaattctttaatctta
gaACGTCGCGaatgcgaaaaaaaattcaaaaaatatttatcaagTCAAAT
TAtacagtttaaaaaaaaacttcgcCCTGGTCGACTTTTAAAAGGgctat
ttttgatgttttttgattgtttttgaagtcaatcagtTTTAAACTTTTGA
CTATATTTTTCGATGGaatgaatttctttgaattttttttttcacataac
agggtgtctacgggaccttaAAAACATTTCAAGTGAACCACCCAAcattg
aaacccttgaaaactGTCACATTTCTGGAAATAACCTGGAAAACCtcgaa
aaatcgttaaaaaccttgaagaagttaattttcaatcttcattttccgac
ctttttaagttttttctttatgataatattccactcctgtttaGCTTTTT
AACAAGTACAGaaccgctatctaattcgaattctatcaaaagttatagcc
ttttttgtctctgcTGCAAATTACATTGAGACAAGACTTTCGAACAATCA
TTTCTGGTTGCAAGGTAGTTAGTTGAAATCTAGCTATTCTATTGCTGCAT
CAAGATAAAACCTTTGGTATTATCCAGTTCTTCTGTCTTAAAACTTAAAC
ACATTGCACAGTTTGTTTTTGTGTATATttaggtctgttagcacaaaaat
actgaaGAAAAAGGCTGAAATGTGGCACATACGACCCAAAAAATGACTCC
AAAATTAtgagttttttctgttttgccTGGCTGTGGTAAAACactttttc
tggaaattttcttaatttgttcatttctttgttgttgtttttttagggAT
ACAAAGTATCAGACGAACGTAAATCGGAACAAGAATCCGTCGATACTGCA
GTTCTCGCTGCCATTGGCAAAGAACCACAATTGAAAAGATACATGTCACA
ACTTTTCACACTCAGGAAAGGCCAGTTTCCTCATGAAATGATCTTCTAAG
AAGataattttctgtaaaaaaaactttccgAGACTTTTTTCTTCATCCCG
ACAGTTAACACTTTTTAAAAGACGTCGACCGTATAAAAAGTGAGATCTGA
CCTCTttaaatagacgatatcggctttagataaatgcaatgcattctggt
ttctagggactctcaaaggaattataatctattataattgatctattata
attcctttgagagtc

Coding sequence (CDS) from alignment at scaffold_19:46031..56595+

>TCONS_00050868 ID=TCONS_00050868|Name=TCONS_00050868|organism=Clytia hemisphaerica|type=CDS|length=4455bp|location=Sequence derived from alignment at scaffold_19:46031..56595+ (Clytia hemisphaerica)
AATTTTGAGTTGCCGGCGGCCGGCCGGGGTAGTCAAATAAAAATTACGGG
TAGTTGGCTAAGCGGAGCTGGTTTGTTTTGTTCTGCGAAATACAACGATT
TCGTGTTTTGTTTTCACGAATGCAATCTTTTATGTCGGCCTTTTCCCGTT
GGGTTGTCAGTTAAAAAAATGGCAAAACCACACGCATCCCGAAACTCGAC
CCTTCCCGGTGGTGTCAGCCGTCTTGGCAGAGCTACAGTTTACAAAAAGA
AAGCTCTCTACAAGCGGAAAAAGGTTGCAACTAAACCAGCCGCCAAAGAT
GCAGCTACCACTAAAGTGAAGCAAGTTGGAGGTGACAAAAATGGTAAAAC
ACGTACTGTTCCATTACAAAAGGAATCTAGATTCTACCCAACAGAAGACA
TCAAAAGACCCTTGAGAAACAGGAAAACACAACGTCCATCCAAACTGCGA
CAAAGTTTGACCCCAGGAACTGTCTGCATTTTGCTTGCTGGCAGACATCG
TGGAAAACGTGTTGTATTACTCAAACAATTGGACAACTCTGGTCTCCTGT
TGGTTACTGGTCCATACAAAGTTAACGGTGTTCCACTCAGACGTGTTCCA
GCATCTTACGTCATTGCAACTCGAACTAAAGTTGATGTATCCGGAGTTAA
ATTGTCTGATAAAATTAATGACACTTTGTTCAAACGCTCCAAGAAAGCCA
AAAGATCATCAGACGCTATGTTCGAAGAATCAGCAGCTggATACAAAGTA
TCAGACGAACGTAAATCGGAACAAGAATCCGTCGATACTGCAGTTCTCGC
TGCCATTGGCAAAGAACCACAATTGAAAAGATACATGTCACAACTTTTCA
CACTCAGGAAAGGCCAGTTTCCTCATGAAATGATCTTCTAAAATTTTGAG
TTGCCGGCGGCCGGCCGGGGTAGTCAAATAAAAATTACGGGTAGTTGGCT
AAGCGGAGCTGGTTTGTTTTGTTCTGCGAAATACAACGATTTCGTGTTTT
GTTTTCACGAATGCAATCTTTTATGTCGGCCTTTTCCCGTTGGGTTGTCA
GTTAAAAAAATGGCAAAACCACACGCATCCCGAAACTCGACCCTTCCCGG
TGGTGTCAGCCGTCTTGGCAGAGCTACAGTTTACAAAAAGAAAGCTCTCT
ACAAGCGGAAAAAGGTTGCAACTAAACCAGCCGCCAAAGATGCAGCTACC
ACTAAAGTGAAGCAAGTTGGAGGTGACAAAAATGGTAAAACACGTACTGT
TCCATTACAAAAGGAATCTAGATTCTACCCAACAGAAGACATCAAAAGAC
CCTTGAGAAACAGGAAAACACAACGTCCATCCAAACTGCGACAAAGTTTG
ACCCCAGGAACTGTCTGCATTTTGCTTGCTGGCAGACATCGTGGAAAACG
TGTTGTATTACTCAAACAATTGGACAACTCTGGTCTCCTGTTGGTTACTG
GTCCATACAAAGTTAACGGTGTTCCACTCAGACGTGTTCCAGCATCTTAC
GTCATTGCAACTCGAACTAAAGTTGATGTATCCGGAGTTAAATTGTCTGA
TAAAATTAATGACACTTTGTTCAAACGCTCCAAGAAAGCCAAAAGATCAT
CAGACGCTATGTTCGAAGAATCAGCAGCTggATACAAAGTATCAGACGAA
CGTAAATCGGAACAAGAATCCGTCGATACTGCAGTTCTCGCTGCCATTGG
CAAAGAACCACAATTGAAAAGATACATGTCACAACTTTTCACACTCAGGA
AAGGCCAGTTTCCTCATGAAATGATCTTCTAAAATTTTGAGTTGCCGGCG
GCCGGCCGGGGTAGTCAAATAAAAATTACGGGTAGTTGGCTAAGCGGAGC
TGGTTTGTTTTGTTCTGCGAAATACAACGATTTCGTGTTTTGTTTTCACG
AATGCAATCTTTTATGTCGGCCTTTTCCCGTTGGGTTGTCAGTTAAAAAA
ATGGCAAAACCACACGCATCCCGAAACTCGACCCTTCCCGGTGGTGTCAG
CCGTCTTGGCAGAGCTACAGTTTACAAAAAGAAAGCTCTCTACAAGCGGA
AAAAGGTTGCAACTAAACCAGCCGCCAAAGATGCAGCTACCACTAAAGTG
AAGCAAGTTGGAGGTGACAAAAATGGTAAAACACGTACTGTTCCATTACA
AAAGGAATCTAGATTCTACCCAACAGAAGACATCAAAAGACCCTTGAGAA
ACAGGAAAACACAACGTCCATCCAAACTGCGACAAAGTTTGACCCCAGGA
ACTGTCTGCATTTTGCTTGCTGGCAGACATCGTGGAAAACGTGTTGTATT
ACTCAAACAATTGGACAACTCTGGTCTCCTGTTGGTTACTGGTCCATACA
AAGTTAACGGTGTTCCACTCAGACGTGTTCCAGCATCTTACGTCATTGCA
ACTCGAACTAAAGTTGATGTATCCGGAGTTAAATTGTCTGATAAAATTAA
TGACACTTTGTTCAAACGCTCCAAGAAAGCCAAAAGATCATCAGACGCTA
TGTTCGAAGAATCAGCAGCTggATACAAAGTATCAGACGAACGTAAATCG
GAACAAGAATCCGTCGATACTGCAGTTCTCGCTGCCATTGGCAAAGAACC
ACAATTGAAAAGATACATGTCACAACTTTTCACACTCAGGAAAGGCCAGT
TTCCTCATGAAATGATCTTCTAAAATTTTGAGTTGCCGGCGGCCGGCCGG
GGTAGTCAAATAAAAATTACGGGTAGTTGGCTAAGCGGAGCTGGTTTGTT
TTGTTCTGCGAAATACAACGATTTCGTGTTTTGTTTTCACGAATGCAATC
TTTTATGTCGGCCTTTTCCCGTTGGGTTGTCAGTTAAAAAAATGGCAAAA
CCACACGCATCCCGAAACTCGACCCTTCCCGGTGGTGTCAGCCGTCTTGG
CAGAGCTACAGTTTACAAAAAGAAAGCTCTCTACAAGCGGAAAAAGGTTG
CAACTAAACCAGCCGCCAAAGATGCAGCTACCACTAAAGTGAAGCAAGTT
GGAGGTGACAAAAATGGTAAAACACGTACTGTTCCATTACAAAAGGAATC
TAGATTCTACCCAACAGAAGACATCAAAAGACCCTTGAGAAACAGGAAAA
CACAACGTCCATCCAAACTGCGACAAAGTTTGACCCCAGGAACTGTCTGC
ATTTTGCTTGCTGGCAGACATCGTGGAAAACGTGTTGTATTACTCAAACA
ATTGGACAACTCTGGTCTCCTGTTGGTTACTGGTCCATACAAAGTTAACG
GTGTTCCACTCAGACGTGTTCCAGCATCTTACGTCATTGCAACTCGAACT
AAAGTTGATGTATCCGGAGTTAAATTGTCTGATAAAATTAATGACACTTT
GTTCAAACGCTCCAAGAAAGCCAAAAGATCATCAGACGCTATGTTCGAAG
AATCAGCAGCTggATACAAAGTATCAGACGAACGTAAATCGGAACAAGAA
TCCGTCGATACTGCAGTTCTCGCTGCCATTGGCAAAGAACCACAATTGAA
AAGATACATGTCACAACTTTTCACACTCAGGAAAGGCCAGTTTCCTCATG
AAATGATCTTCTAAAATTTTGAGTTGCCGGCGGCCGGCCGGGGTAGTCAA
ATAAAAATTACGGGTAGTTGGCTAAGCGGAGCTGGTTTGTTTTGTTCTGC
GAAATACAACGATTTCGTGTTTTGTTTTCACGAATGCAATCTTTTATGTC
GGCCTTTTCCCGTTGGGTTGTCAGTTAAAAAAATGGCAAAACCACACGCA
TCCCGAAACTCGACCCTTCCCGGTGGTGTCAGCCGTCTTGGCAGAGCTAC
AGTTTACAAAAAGAAAGCTCTCTACAAGCGGAAAAAGGTTGCAACTAAAC
CAGCCGCCAAAGATGCAGCTACCACTAAAGTGAAGCAAGTTGGAGGTGAC
AAAAATGGTAAAACACGTACTGTTCCATTACAAAAGGAATCTAGATTCTA
CCCAACAGAAGACATCAAAAGACCCTTGAGAAACAGGAAAACACAACGTC
CATCCAAACTGCGACAAAGTTTGACCCCAGGAACTGTCTGCATTTTGCTT
GCTGGCAGACATCGTGGAAAACGTGTTGTATTACTCAAACAATTGGACAA
CTCTGGTCTCCTGTTGGTTACTGGTCCATACAAAGTTAACGGTGTTCCAC
TCAGACGTGTTCCAGCATCTTACGTCATTGCAACTCGAACTAAAGTTGAT
GTATCCGGAGTTAAATTGTCTGATAAAATTAATGACACTTTGTTCAAACG
CTCCAAGAAAGCCAAAAGATCATCAGACGCTATGTTCGAAGAATCAGCAG
CTggATACAAAGTATCAGACGAACGTAAATCGGAACAAGAATCCGTCGAT
ACTGCAGTTCTCGCTGCCATTGGCAAAGAACCACAATTGAAAAGATACAT
GTCACAACTTTTCACACTCAGGAAAGGCCAGTTTCCTCATGAAATGATCT
TCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032238XLOC_032238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050868-exon-scaffold_19-1491911889:46031..46200TCONS_00050868-exon-scaffold_19-1491911889:46031..46200Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1510915933:46031..46200TCONS_00050868-exon-scaffold_19-1510915933:46031..46200Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1575043694:46031..46200TCONS_00050868-exon-scaffold_19-1575043694:46031..46200Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1491911889:46405..46743TCONS_00050868-exon-scaffold_19-1491911889:46405..46743Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1510915933:46405..46743TCONS_00050868-exon-scaffold_19-1510915933:46405..46743Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1575043694:46405..46743TCONS_00050868-exon-scaffold_19-1575043694:46405..46743Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1491911889:51116..51167TCONS_00050868-exon-scaffold_19-1491911889:51116..51167Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1510915933:51116..51167TCONS_00050868-exon-scaffold_19-1510915933:51116..51167Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1575043694:51116..51167TCONS_00050868-exon-scaffold_19-1575043694:51116..51167Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1491911889:52371..52549TCONS_00050868-exon-scaffold_19-1491911889:52371..52549Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1510915933:52371..52549TCONS_00050868-exon-scaffold_19-1510915933:52371..52549Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1575043694:52371..52549TCONS_00050868-exon-scaffold_19-1575043694:52371..52549Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1491911889:56227..56595TCONS_00050868-exon-scaffold_19-1491911889:56227..56595Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1510915933:56227..56595TCONS_00050868-exon-scaffold_19-1510915933:56227..56595Clytia hemisphaericaexon
TCONS_00050868-exon-scaffold_19-1575043694:56227..56595TCONS_00050868-exon-scaffold_19-1575043694:56227..56595Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050868-proteinTCONS_00050868-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:46031..56595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
866.876	878.274	938.965	970.343	1017.52	842.247	1300.2	1378.74	2315.14	1980.31	2443.33	2962.19	3694.38	3741.15	3322.39	3145.75	3343.06	3526.38	1974.97	2145.86	3184.15	3054.3	1944.69	1960.1	2462.9	2561.97	2723.71	2734.96	1786.57	1826.8
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR00091560S_ribosomal_L6E
IPR014722Rib_L2_dom2
IPR005568Ribosomal_L6_N
IPR008991Translation_prot_SH3-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00050868 vs. Swiss-Prot (Human)
Match: RL6 (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 2.208e-48
Identity = 92/193 (47.67%), Postives = 126/193 (65.28%), Query Frame = 3 
Query:  330 GGDKNGKTRTVPLQKESRFYPTEDIKRPLRNRK----TQRPSKLRQSLTPGTVCILLAGRHRGKRVVLLKQLDNSGLLLVTGPYKVNGVPLRRVPASYVIATRTKVDVSGVKLSDKINDTLFXXXXXXX--XXXDAMFEESAAGYKVSDERKSEQESVDTAVLAAIGKEPQLKRYMSQLFTLRKGQFPHEMIF 890
            GGDKNG TR V L+K  R+YPTED+ R L +      +Q   KLR S+TPGT+ I+L GRHRGKRVV LKQL  SGLLLVTGP  +N VPLRR    +VIAT TK+D+S VK+   + D  FK+ K  K       +F+     Y+++++RK +Q++VD+ +L  I   PQL+ Y+  +F L  G +PH+++F
Sbjct:   97 GGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQL-ASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
The following BLAST results are available for this feature:
BLAST of TCONS_00050868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL62.208e-4847.6760S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
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