TCONS_00050988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050988
Unique NameTCONS_00050988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050988 ID=TCONS_00050988|Name=TCONS_00050988|organism=Clytia hemisphaerica|type=transcript|length=512bp
AACCAATCTTATGGTATCCGTTCCCCATTAGTCACCACAGAAAATTCTAT
GCTTCAAATCTCATCTGCTGTCAACTCGAATCATGACCATAAATATCTGA
AATACGGGCTGGTCATCAACAAGCCGTACAACATCAAGATTAGCCAATAC
TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA
AGTACATAACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGT
TCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaa
tttgtaaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCT
AAATAGCATACTTTATTGTTAAATAAGCATACAATTTATCTGGTAACCAC
ATGGTGAAACTTTCATCcgaccatagtataagaaagccgcggctggaatg
ataacatctgaatttctcttgttctatctctgtcgtatttgatgactatt
tgttgatcaaga
Run BLAST on NCBI

transcript from alignment at scaffold_190:34606..35117+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050988 ID=TCONS_00050988|Name=TCONS_00050988|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at scaffold_190:34606..35117+ (Clytia hemisphaerica)
AACCAATCTTATGGTATCCGTTCCCCATTAGTCACCACAGAAAATTCTAT
GCTTCAAATCTCATCTGCTGTCAACTCGAATCATGACCATAAATATCTGA
AATACGGGCTGGTCATCAACAAGCCGTACAACATCAAGATTAGCCAATAC
TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA
AGTACATAACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGT
TCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaa
tttgtaaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCT
AAATAGCATACTTTATTGTTAAATAAGCATACAATTTATCTGGTAACCAC
ATGGTGAAACTTTCATCcgaccatagtataagaaagccgcggctggaatg
ataacatctgaatttctcttgttctatctctgtcgtatttgatgactatt
tgttgatcaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032325XLOC_032325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050988-exon-scaffold_190-1491911889:34606..35117TCONS_00050988-exon-scaffold_190-1491911889:34606..35117Clytia hemisphaericaexon
TCONS_00050988-exon-scaffold_190-1510915933:34606..35117TCONS_00050988-exon-scaffold_190-1510915933:34606..35117Clytia hemisphaericaexon
TCONS_00050988-exon-scaffold_190-1575043694:34606..35117TCONS_00050988-exon-scaffold_190-1575043694:34606..35117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_190supercontigscaffold_190:34606..35117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05594	0.363972	0.92419	0.0595209	0.233205	0.409418	2.63209	0.870371	2.48299	1.34498	6.45289	3.50465	8.04085	4.51686	0.266585	0.0647515	0.212683	0.437185	15.8188	10.4422	3.71136	3.88276	0.336772	1.43815	2.5636	0	0.334748	0.102834	0	0.207015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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