|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050989 ID=TCONS_00050989|Name=TCONS_00050989|organism=Clytia hemisphaerica|type=transcript|length=956bp AACCAATCTTATGGTATCCGTTCCCCATTAGTCACCACAGAAAATTCTAT GCTTCAAATCTCATCTGCTGTCAACTCGAATCATGACCATAAATATCTGA AATACGGGCTGGTCATCAACAAGCCGTACAACATCAAGATTAGCCAATAC TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA AGTACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGTTCTAT CTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaatttgt aaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCTAAATA GCATACTTTATTGTTAAATAAGCATACAATTNTATGAAGTTCTATCTTTT GCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaatttgtaaatt tcttaTGAAAACATTTAACATTTAACTGGAAAAGGACGCTGCTGGTTATG TGTAAACTATTATAAGTTTatcattaaaattaaaattaatagTGTAAATT ATTGTAACTTTTTGCCTTGGCacttatttttgaattttgattcatTACAG GGAATGAGGAGTTTTGTAAAGATTTGGCTAGATAAATTTCAAACCTTTAA TTTAACCGGTGAGATAATTTAATTAGTGATATTCAGTAAGTAAAGTTTTC AACGGAAACATctcggtttttgccagtagtggcaattCAAGCTAGGGACA ATTTGTTTAGAATTTGCAACTAATGAGGAGAACCAGGGTGTTTCCaaaga aaacattacgtaatgaatattATGAATTAAGTAATCTCACCGGCTGAATC GATAACCGTGTATCCAGTGTCTACAGTAGaatctcgcttattcgaacttc catcattcgaatctttctatatttCGATATAATTCCCAATCCccatcaag gagaaa Run BLAST on NCBI transcript from alignment at scaffold_190:34606..41240+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050989 ID=TCONS_00050989|Name=TCONS_00050989|organism=Clytia hemisphaerica|type=transcript|length=6635bp|location=Sequence derived from alignment at scaffold_190:34606..41240+ (Clytia hemisphaerica) AACCAATCTTATGGTATCCGTTCCCCATTAGTCACCACAGAAAATTCTAT
GCTTCAAATCTCATCTGCTGTCAACTCGAATCATGACCATAAATATCTGA
AATACGGGCTGGTCATCAACAAGCCGTACAACATCAAGATTAGCCAATAC
TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA
AGTACATAACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGT
TCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaa
tttgtaaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCT
AAATAGCATACTTTATTGTTAAATAAGCATACAATTTATCTGGTAACCAC
ATGGTGAAACTTTCATCcgaccatagtataagaaagccgcggctggaatg
ataacatctgaatttctcttgttctatctctgtcgtatttgatgactatt
tgttgatcaagaaatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtaaactgacaggaaagttgtcatcttgaatatagtt
cttataatttcaattttggcgaaaaactattgtttccacaaataccccta
aaatatgtccaaaattagatcaagtgttctattgggtacagactcgaaga
tatctagcaacaaaaatctttttgtggaggaaaataagagaaaaatttca
aaaactatctaccaataataaactgagcatcttgatgttcttataaagct
cggagacagagatgaaacagcaattaactgaaaagacaatgctgtacata
ttccagccgcggctttcttatactatgatccgacacgctaaagctctgaa
gatcaggcaaattttcaacatctggaaggtttacgtTACGGAATTTCGTG
AGACCgcttcaagaattttgcagtgggaggtctggtaacccagccctcgt
tttcggggatcggcaggtccaaccgaaatatttataGGTTTACGCACAAG
Ggatgttgaacccgactggaggtgcggcacatcaaaggccgactatcatt
cctctccgttgggaaattggcccgctcctttagagctttagcgtgggtgg
ccgccaatccgccatcggaatatcagataatcaGATAAGCATATAATTGT
TATAtagcttttttgtttctttttcttcttttgtttgttcttttttgttc
gctattttttattttgttgtttaatacacactttttttataagaatatct
tctaccTTATCGGGAAAGAAACGtcagagttttatttagtcggagttttt
tttcgtcggggaaaagtttcgtcacctagaggcattttcgtcactctccc
tcgaccaaaatttcaattcgtcacttttccccgacgaaatttacaatttt
gtcACTTTCGCCCAACTAAATCGTCCAAATGAAATGTTTTCCTTCACtaa
ctcgaaaaaagatcttgtaattcgacgaaGGCGCAaattcggttaataaa
ggtgtgaaaaatttagattttaattttggttagCCTTTTGCTTATTTTAG
ACAGGCTATTGTTAAAAACCGTACTTAAATATTCAAATGTATcctggttt
gtttacaaatttcgtcaatacttttatgtccctacaaaatcaaaacatat
gtcacatgtcaaaatcaaaaatcaaaacaaatatggctgattttgattgt
ttcaattgttttacaagtttgttttgcttTAAATATTCAAATGGGGTAAA
ATCTTGGTTATCTTTTAGGAACTTGATTCAATCATTCAGGTAACATGTAG
AccgaaaatcaaataaaattgagAACGTGTaaaagaatacacgtttttat
aagagcaaactgtataagaacataaggcttccatggctaaaatcttaaaa
acaagttaagaacatttaaaggctttgcggactcttaaacacccgatttc
ttatgaaaataggcaaaaatggtgaaaataagaacatgttaagtacattt
taagcttaaaatccaaaaagttaagaaaatccgaaggcttcaaaaagttt
ggatgttcttataaaaaaaacacgtaagaacaaaaaatcatcaaagtata
ccgaaaaagaaaatgttaataAATTGCAATCGCATTTTTTTTCTCGCAAA
GACAGTACTAGTATATGAAAGATTATCGTTGAACGAGGAAGAATAAAGAT
GCATCAAAACAAATCATCatcaactttcttttttctGGCAATTTTAACGA
TCGttgatttgtcttttttagAGGCTAAAAATAAATGCATAGTAAGTaca
aatactcaaaaaataccGGACACAAGCCAATTCCTGGTAAAGCAGTATGG
TGTCCGCTAGCTTTTTTCATCTgctggtgtttttttataaaagagctgta
ctctcgggtacctataatagccgtccccccgctaaataatttttcgaaag
ttttgcacccaagacattcttattccagccCCTTCCCcacttattgattt
ttgagagttttccgatccccctgcttattccaatctccccggctattagg
tacccgagagtatataACAAGATTTTGCTGATTTCAAGCAAAGGCATACA
TCACtgtgaatttgattattttcaatccaaattttttttctagaaaggaA
TACCAGAAAATATCCATGGAGCTAAGCCACAAATATTGATCAAAGGTAAA
ATGGACCGTTCGAGAAAAATTTtggtacatgggggtggaggatatattgg
atattttgtacGGGGGGGTAGTGAAATATCGGCGAAATTTGCCTTATTTG
GgggcaaacttgctctgttttGATAGTTTTGAATCTCTGGGAGGTCAACT
GATGCTTACCCGGGGGATCATAATTCACAAAGTAAAGGGTAAAGGgagta
aatttcaaaaaaatttcatatccTCTAGCCCCCATATTAATTTTTTCTTG
GAGAGGCCAATAAATATTTTCTGAAAAGATGAAGGAGAGAGAAAAATCTT
AAACCCTTCCCATGCAAGCAAAGTGAAAGCTTCTTAGAACTtgctaccgt
gaaaagcacagctcaaaatcatatatttacgctgtgccgacgaatcgaga
ttctattcatcgcgcaatcagcgaagacaaaagtaaccatgacgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaca
taaagtctgtctattatttcgattcaattaaagtgacatttccataatta
aaagtttagtaattactgttatacatttggggatcatgtaaaagatttct
ttcgaaataaactcatttcaactacacttggaggtttctggggaattcgt
aaatagtaaactgcatactgatacagtctgttagacattaatatggtaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcagtgattagattgacacatgcgcgataaaatttct
attatttgtcttcagaggttactattttctttgaaaacttaacctctgat
actcagggtaagaaCTTGCTCTTGATCGTCAAATCCTAATATTCTTATAT
AGcttctatttaaaaaaatgtacatACTCTGAAAGCCATTTACTTAGCCG
GTCTATAGGATAAATTTTCCTGTCTTAGAAATGAAAGCCAGATCTGGTGG
ATTTATTACAAGCATTGCACGGCAGTCTACCGAATGGGAAATCTCTTTCA
CCGTCAATTTTCATAGCTTTGGAAAAAACGAATCTGACTGGCATAATATT
TTTATCATCACAAACCACGGTAGCAGGCAATCATATGGTATTCGTTCCCC
ATTAGTCACCACACAAAATTCAATGCTTCAAATCTCATCTGCTGTCAACT
CAAATTATGACCATAAATATCTGAAATACGGGCTGGTCATCAACAAGCCG
TACATGATCAAGATTAGCCAATACTATATTGCAAATGGTCAATATAAATA
CCGAATTGAATTAGATGGCGAAGAAGTACATAACACACTCAACAATGATG
CCAGACAATTTTATGATATGAAGTTCTATCTTTTGCGAACGAATGGTGCA
GATTGTGACGTCTctgatttcaaatttgtaaatttcttaTGAAAACTCTA
AACCTTTAACTAGAGATTATTGCTAAATAGCATACTTTATTGTTAAATAA
GCATACAATTNTATGAAGTTCTATCTTTTGCGAACGAATGGTGCAGATTG
TGACGTCTctgatttcaaatttgtaaatttcttaTGAAAACATTTAACAT
TTAACTGGAAAAGGACGCTGCTGGTTATGTGTAAACTATTATAAGTTTat
cattaaaattaaaattaatagTGTAAATTATTGTAACTTTTTGCCTTGGC
acttatttttgaattttgattcatTACAGGGAATGAGGAGTTTTGTAAAG
ATTTGGCTAGATAAATTTCAAACCTTTAATTTAACCGGTGAGATAATTTA
ATTAGTGATATTCAGTAAGTAAAGTTTTCAACGGAAACATctcggttttt
gccagtagtggcaattCAAGCTAGGGACAATTTGTTTAGAATTTGCAACT
AATGAGGAGAACCAGGGTGTTTCCaaagaaaacattacgtaatgaatatt
ATGAATTAAGTAATCTCACCGGCTGAATCGATAACCGTGTATCCAGTGTC
TACAGTAGaatctcgcttattcgaacttccatcattcgaatctttctata
tttCGATATAATTCCCAATCCccatcaaggagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050989-exon-scaffold_190-1491911889:34606..34810 | TCONS_00050989-exon-scaffold_190-1491911889:34606..34810 | Clytia hemisphaerica | exon |
TCONS_00050989-exon-scaffold_190-1510915933:34606..34810 | TCONS_00050989-exon-scaffold_190-1510915933:34606..34810 | Clytia hemisphaerica | exon |
TCONS_00050989-exon-scaffold_190-1575043694:34606..34810 | TCONS_00050989-exon-scaffold_190-1575043694:34606..34810 | Clytia hemisphaerica | exon |
TCONS_00050989-exon-scaffold_190-1491911889:40490..41240 | TCONS_00050989-exon-scaffold_190-1491911889:40490..41240 | Clytia hemisphaerica | exon |
TCONS_00050989-exon-scaffold_190-1510915933:40490..41240 | TCONS_00050989-exon-scaffold_190-1510915933:40490..41240 | Clytia hemisphaerica | exon |
TCONS_00050989-exon-scaffold_190-1575043694:40490..41240 | TCONS_00050989-exon-scaffold_190-1575043694:40490..41240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_190 | supercontig | scaffold_190:34606..41240 + |
Blast
The following BLAST results are available for this feature:
|