TCONS_00050989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050989
Unique NameTCONS_00050989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length956

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050989 ID=TCONS_00050989|Name=TCONS_00050989|organism=Clytia hemisphaerica|type=transcript|length=956bp
AACCAATCTTATGGTATCCGTTCCCCATTAGTCACCACAGAAAATTCTAT
GCTTCAAATCTCATCTGCTGTCAACTCGAATCATGACCATAAATATCTGA
AATACGGGCTGGTCATCAACAAGCCGTACAACATCAAGATTAGCCAATAC
TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA
AGTACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGTTCTAT
CTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaatttgt
aaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCTAAATA
GCATACTTTATTGTTAAATAAGCATACAATTNTATGAAGTTCTATCTTTT
GCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaatttgtaaatt
tcttaTGAAAACATTTAACATTTAACTGGAAAAGGACGCTGCTGGTTATG
TGTAAACTATTATAAGTTTatcattaaaattaaaattaatagTGTAAATT
ATTGTAACTTTTTGCCTTGGCacttatttttgaattttgattcatTACAG
GGAATGAGGAGTTTTGTAAAGATTTGGCTAGATAAATTTCAAACCTTTAA
TTTAACCGGTGAGATAATTTAATTAGTGATATTCAGTAAGTAAAGTTTTC
AACGGAAACATctcggtttttgccagtagtggcaattCAAGCTAGGGACA
ATTTGTTTAGAATTTGCAACTAATGAGGAGAACCAGGGTGTTTCCaaaga
aaacattacgtaatgaatattATGAATTAAGTAATCTCACCGGCTGAATC
GATAACCGTGTATCCAGTGTCTACAGTAGaatctcgcttattcgaacttc
catcattcgaatctttctatatttCGATATAATTCCCAATCCccatcaag
gagaaa
Run BLAST on NCBI

transcript from alignment at scaffold_190:34606..41240+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050989 ID=TCONS_00050989|Name=TCONS_00050989|organism=Clytia hemisphaerica|type=transcript|length=6635bp|location=Sequence derived from alignment at scaffold_190:34606..41240+ (Clytia hemisphaerica)
AACCAATCTTATGGTATCCGTTCCCCATTAGTCACCACAGAAAATTCTAT GCTTCAAATCTCATCTGCTGTCAACTCGAATCATGACCATAAATATCTGA AATACGGGCTGGTCATCAACAAGCCGTACAACATCAAGATTAGCCAATAC TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA AGTACATAACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGT TCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaa tttgtaaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCT AAATAGCATACTTTATTGTTAAATAAGCATACAATTTATCTGGTAACCAC ATGGTGAAACTTTCATCcgaccatagtataagaaagccgcggctggaatg ataacatctgaatttctcttgttctatctctgtcgtatttgatgactatt tgttgatcaagaaatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNtaaactgacaggaaagttgtcatcttgaatatagtt cttataatttcaattttggcgaaaaactattgtttccacaaataccccta aaatatgtccaaaattagatcaagtgttctattgggtacagactcgaaga tatctagcaacaaaaatctttttgtggaggaaaataagagaaaaatttca aaaactatctaccaataataaactgagcatcttgatgttcttataaagct cggagacagagatgaaacagcaattaactgaaaagacaatgctgtacata ttccagccgcggctttcttatactatgatccgacacgctaaagctctgaa gatcaggcaaattttcaacatctggaaggtttacgtTACGGAATTTCGTG AGACCgcttcaagaattttgcagtgggaggtctggtaacccagccctcgt tttcggggatcggcaggtccaaccgaaatatttataGGTTTACGCACAAG Ggatgttgaacccgactggaggtgcggcacatcaaaggccgactatcatt cctctccgttgggaaattggcccgctcctttagagctttagcgtgggtgg ccgccaatccgccatcggaatatcagataatcaGATAAGCATATAATTGT TATAtagcttttttgtttctttttcttcttttgtttgttcttttttgttc gctattttttattttgttgtttaatacacactttttttataagaatatct tctaccTTATCGGGAAAGAAACGtcagagttttatttagtcggagttttt tttcgtcggggaaaagtttcgtcacctagaggcattttcgtcactctccc tcgaccaaaatttcaattcgtcacttttccccgacgaaatttacaatttt gtcACTTTCGCCCAACTAAATCGTCCAAATGAAATGTTTTCCTTCACtaa ctcgaaaaaagatcttgtaattcgacgaaGGCGCAaattcggttaataaa ggtgtgaaaaatttagattttaattttggttagCCTTTTGCTTATTTTAG ACAGGCTATTGTTAAAAACCGTACTTAAATATTCAAATGTATcctggttt gtttacaaatttcgtcaatacttttatgtccctacaaaatcaaaacatat gtcacatgtcaaaatcaaaaatcaaaacaaatatggctgattttgattgt ttcaattgttttacaagtttgttttgcttTAAATATTCAAATGGGGTAAA ATCTTGGTTATCTTTTAGGAACTTGATTCAATCATTCAGGTAACATGTAG AccgaaaatcaaataaaattgagAACGTGTaaaagaatacacgtttttat aagagcaaactgtataagaacataaggcttccatggctaaaatcttaaaa acaagttaagaacatttaaaggctttgcggactcttaaacacccgatttc ttatgaaaataggcaaaaatggtgaaaataagaacatgttaagtacattt taagcttaaaatccaaaaagttaagaaaatccgaaggcttcaaaaagttt ggatgttcttataaaaaaaacacgtaagaacaaaaaatcatcaaagtata ccgaaaaagaaaatgttaataAATTGCAATCGCATTTTTTTTCTCGCAAA GACAGTACTAGTATATGAAAGATTATCGTTGAACGAGGAAGAATAAAGAT GCATCAAAACAAATCATCatcaactttcttttttctGGCAATTTTAACGA TCGttgatttgtcttttttagAGGCTAAAAATAAATGCATAGTAAGTaca aatactcaaaaaataccGGACACAAGCCAATTCCTGGTAAAGCAGTATGG TGTCCGCTAGCTTTTTTCATCTgctggtgtttttttataaaagagctgta ctctcgggtacctataatagccgtccccccgctaaataatttttcgaaag ttttgcacccaagacattcttattccagccCCTTCCCcacttattgattt ttgagagttttccgatccccctgcttattccaatctccccggctattagg tacccgagagtatataACAAGATTTTGCTGATTTCAAGCAAAGGCATACA TCACtgtgaatttgattattttcaatccaaattttttttctagaaaggaA TACCAGAAAATATCCATGGAGCTAAGCCACAAATATTGATCAAAGGTAAA ATGGACCGTTCGAGAAAAATTTtggtacatgggggtggaggatatattgg atattttgtacGGGGGGGTAGTGAAATATCGGCGAAATTTGCCTTATTTG GgggcaaacttgctctgttttGATAGTTTTGAATCTCTGGGAGGTCAACT GATGCTTACCCGGGGGATCATAATTCACAAAGTAAAGGGTAAAGGgagta aatttcaaaaaaatttcatatccTCTAGCCCCCATATTAATTTTTTCTTG GAGAGGCCAATAAATATTTTCTGAAAAGATGAAGGAGAGAGAAAAATCTT AAACCCTTCCCATGCAAGCAAAGTGAAAGCTTCTTAGAACTtgctaccgt gaaaagcacagctcaaaatcatatatttacgctgtgccgacgaatcgaga ttctattcatcgcgcaatcagcgaagacaaaagtaaccatgacgNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaca taaagtctgtctattatttcgattcaattaaagtgacatttccataatta aaagtttagtaattactgttatacatttggggatcatgtaaaagatttct ttcgaaataaactcatttcaactacacttggaggtttctggggaattcgt aaatagtaaactgcatactgatacagtctgttagacattaatatggtaNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNcagtgattagattgacacatgcgcgataaaatttct attatttgtcttcagaggttactattttctttgaaaacttaacctctgat actcagggtaagaaCTTGCTCTTGATCGTCAAATCCTAATATTCTTATAT AGcttctatttaaaaaaatgtacatACTCTGAAAGCCATTTACTTAGCCG GTCTATAGGATAAATTTTCCTGTCTTAGAAATGAAAGCCAGATCTGGTGG ATTTATTACAAGCATTGCACGGCAGTCTACCGAATGGGAAATCTCTTTCA CCGTCAATTTTCATAGCTTTGGAAAAAACGAATCTGACTGGCATAATATT TTTATCATCACAAACCACGGTAGCAGGCAATCATATGGTATTCGTTCCCC ATTAGTCACCACACAAAATTCAATGCTTCAAATCTCATCTGCTGTCAACT CAAATTATGACCATAAATATCTGAAATACGGGCTGGTCATCAACAAGCCG TACATGATCAAGATTAGCCAATACTATATTGCAAATGGTCAATATAAATA CCGAATTGAATTAGATGGCGAAGAAGTACATAACACACTCAACAATGATG CCAGACAATTTTATGATATGAAGTTCTATCTTTTGCGAACGAATGGTGCA GATTGTGACGTCTctgatttcaaatttgtaaatttcttaTGAAAACTCTA AACCTTTAACTAGAGATTATTGCTAAATAGCATACTTTATTGTTAAATAA GCATACAATTNTATGAAGTTCTATCTTTTGCGAACGAATGGTGCAGATTG TGACGTCTctgatttcaaatttgtaaatttcttaTGAAAACATTTAACAT TTAACTGGAAAAGGACGCTGCTGGTTATGTGTAAACTATTATAAGTTTat cattaaaattaaaattaatagTGTAAATTATTGTAACTTTTTGCCTTGGC acttatttttgaattttgattcatTACAGGGAATGAGGAGTTTTGTAAAG ATTTGGCTAGATAAATTTCAAACCTTTAATTTAACCGGTGAGATAATTTA ATTAGTGATATTCAGTAAGTAAAGTTTTCAACGGAAACATctcggttttt gccagtagtggcaattCAAGCTAGGGACAATTTGTTTAGAATTTGCAACT AATGAGGAGAACCAGGGTGTTTCCaaagaaaacattacgtaatgaatatt ATGAATTAAGTAATCTCACCGGCTGAATCGATAACCGTGTATCCAGTGTC TACAGTAGaatctcgcttattcgaacttccatcattcgaatctttctata tttCGATATAATTCCCAATCCccatcaaggagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032325XLOC_032325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050989-exon-scaffold_190-1491911889:34606..34810TCONS_00050989-exon-scaffold_190-1491911889:34606..34810Clytia hemisphaericaexon
TCONS_00050989-exon-scaffold_190-1510915933:34606..34810TCONS_00050989-exon-scaffold_190-1510915933:34606..34810Clytia hemisphaericaexon
TCONS_00050989-exon-scaffold_190-1575043694:34606..34810TCONS_00050989-exon-scaffold_190-1575043694:34606..34810Clytia hemisphaericaexon
TCONS_00050989-exon-scaffold_190-1491911889:40490..41240TCONS_00050989-exon-scaffold_190-1491911889:40490..41240Clytia hemisphaericaexon
TCONS_00050989-exon-scaffold_190-1510915933:40490..41240TCONS_00050989-exon-scaffold_190-1510915933:40490..41240Clytia hemisphaericaexon
TCONS_00050989-exon-scaffold_190-1575043694:40490..41240TCONS_00050989-exon-scaffold_190-1575043694:40490..41240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_190supercontigscaffold_190:34606..41240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.0475335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.104537 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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