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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050992 ID=TCONS_00050992|Name=TCONS_00050992|organism=Clytia hemisphaerica|type=transcript|length=1646bpRun BLAST on NCBI protein sequence of TCONS_00050992-protein >TCONS_00050992-protein ID=TCONS_00050992-protein|Name=TCONS_00050992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp MKIMADVEELKNQKRKAEEAYRNAVPATQNQQQKLRVCEICAAFLSLYDNRun BLAST on NCBI transcript from alignment at scaffold_190:58033..81088+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050992 ID=TCONS_00050992|Name=TCONS_00050992|organism=Clytia hemisphaerica|type=transcript|length=23056bp|location=Sequence derived from alignment at scaffold_190:58033..81088+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_190:58033..81088+ >TCONS_00050992 ID=TCONS_00050992|Name=TCONS_00050992|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at scaffold_190:58033..81088+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050992 vs. Swiss-Prot (Human)
Match: LC7L2 (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2) HSP 1 Score: 247.284 bits (630), Expect = 2.093e-75 Identity = 117/217 (53.92%), Postives = 163/217 (75.12%), Query Frame = 3
Query: 210 TKFSDPEVCKSYLLGLCPYDLFHNTGSFKSSKKLDLGVCTKVHDPALKADYELAANGKEYEYEFEQFGNISKFVEDCDHKVEANKKRLEETQDQ--EQLAPEALAVHVLNESIGKKLSQAEELGAEGNVEESMKIMADVEELKNQKRKAEEAYRNAVPATQNQQQKLRVCEICAAFLSLYDNDRRLADHFGGRLHMGFIAVRDRLEELKAIVEKKRE 854
KFSD VCKS+LL CP+D+ T ++DLG C KVHD AL+ADYE+A+ +++ +E + ++ F+ DCD + E KKRL ETQ++ ++A +A VH LNE IGK L++ E+LGAEGNVEES K+M +VE+ + +KR+AEE YRN++PA+ QQQKLRVCE+C+A+L L+DNDRRLADHFGG+LH+GFI +R++LEELK +V +K+E
Sbjct: 28 IKFSDDRVCKSHLLNCCPHDVLSGT-------RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE 237 The following BLAST results are available for this feature:
BLAST of TCONS_00050992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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