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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051083 ID=TCONS_00051083|Name=TCONS_00051083|organism=Clytia hemisphaerica|type=transcript|length=1091bp
CAAAGATGGGAAACATCTTTACCGATCGCTCGAAGCATACTTCGCTCTCT
ACCTGGCAATCTTCTCGCGTTACATGGATTGCTTCATCAACAAAAACCAA
GCAATTGAACGGGACCTTCGAGCAGTAGTTGTTCATTCCATCTCGGAAGT
CTCGGCGTATTCATCATCCAACaagatcaaaattgaaaaagccCACGATT
CTATCCAAGACGTGCTGACGAAAATCGATTTCGCCAAACTTCAAAAGGAT
TTTGATACCACACTCGTCAATCAGTCAAAGTACATGAGAAGTTTCATGCG
TCTTTTTGAAGTACTTCTCCTGTTCATTCGTGCATCGCGGGATCAACTGT
GGAACCTCCACTTACAAACGTTACATTCCTTGTGTCcctatttttttgct
tttgacaTGCTAAACTACGCAAGAATGACACCGGTGTATCTATCACAAAT
GTTCGCTCTGGAAAAAGCTGACAAAGAAACATGGGAGCTTCTTTCTAATG
GAGGGTTTTGCATCAACAAGTCGCACGTTCCATTCAGCTCAATCGGTGCA
GATCACGGTATAGAACAAGAGAACAGAGCGCTCAAAGTTATTGGAGGAAT
ACGAGGAATCGCTCACAACCAACAAGCCTTGGACGAGTATTTCTTAACTA
CAGCAGAGATGGGAAATTTGGTCGAAACATTTTGTGAAACTTTTGGCATC
GAAGAAGATGGTGCTCGTAAAAGAGATGAGCATTACCAATTGTCTGGTTC
GAAGAATGTGAGAGTCAGCTCAAATACAGAGAAGATTTCACGCGTTTTGG
ATGAGCATGAAGTGGTATTTAGCACAAAAGAAACAACGCCAAATCAATCA
AATGAAGATAACACGGAAGCAGATAGTTTTGGTGACGGTGGTGATGTGTT
CAATATCTTGACCAAGAAAGTTCTTCCTGTAAAGATATCGAAATCCTTGA
TCCAAATTGAAGAAATCGGTCAAAGTCGATACCGATCGTTTTTAACAGAA
AAGCTCGAAGGTACATTTAAAGATTCACCTTAACATTTATCTCAACGCTC
GCTTCTTGCTTTTTccataataattttcttttcagactttt Run BLAST on NCBI protein sequence of TCONS_00051083-protein >TCONS_00051083-protein ID=TCONS_00051083-protein|Name=TCONS_00051083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
KDGKHLYRSLEAYFALYLAIFSRYMDCFINKNQAIERDLRAVVVHSISEV
SAYSSSNKIKIEKAHDSIQDVLTKIDFAKLQKDFDTTLVNQSKYMRSFMR
LFEVLLLFIRASRDQLWNLHLQTLHSLCPYFFAFDMLNYARMTPVYLSQM
FALEKADKETWELLSNGGFCINKSHVPFSSIGADHGIEQENRALKVIGGI
RGIAHNQQALDEYFLTTAEMGNLVETFCETFGIEEDGARKRDEHYQLSGS
KNVRVSSNTEKISRVLDEHEVVFSTKETTPNQSNEDNTEADSFGDGGDVF
NILTKKVLPVKISKSLIQIEEIGQSRYRSFLTEKLEGTFKDSP Run BLAST on NCBI transcript from alignment at scaffold_193:40441..41531 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051083 ID=TCONS_00051083|Name=TCONS_00051083|organism=Clytia hemisphaerica|type=transcript|length=1091bp|location=Sequence derived from alignment at scaffold_193:40441..41531 (Clytia hemisphaerica)
aaaagtctgaaaagaaaattattatggAAAAAGCAAGAAGCGAGCGTTGA
GATAAATGTTAAGGTGAATCTTTAAATGTACCTTCGAGCTTTTCTGTTAA
AAACGATCGGTATCGACTTTGACCGATTTCTTCAATTTGGATCAAGGATT
TCGATATCTTTACAGGAAGAACTTTCTTGGTCAAGATATTGAACACATCA
CCACCGTCACCAAAACTATCTGCTTCCGTGTTATCTTCATTTGATTGATT
TGGCGTTGTTTCTTTTGTGCTAAATACCACTTCATGCTCATCCAAAACGC
GTGAAATCTTCTCTGTATTTGAGCTGACTCTCACATTCTTCGAACCAGAC
AATTGGTAATGCTCATCTCTTTTACGAGCACCATCTTCTTCGATGCCAAA
AGTTTCACAAAATGTTTCGACCAAATTTCCCATCTCTGCTGTAGTTAAGA
AATACTCGTCCAAGGCTTGTTGGTTGTGAGCGATTCCTCGTATTCCTCCA
ATAACTTTGAGCGCTCTGTTCTCTTGTTCTATACCGTGATCTGCACCGAT
TGAGCTGAATGGAACGTGCGACTTGTTGATGCAAAACCCTCCATTAGAAA
GAAGCTCCCATGTTTCTTTGTCAGCTTTTTCCAGAGCGAACATTTGTGAT
AGATACACCGGTGTCATTCTTGCGTAGTTTAGCAtgtcaaaagcaaaaaa
ataggGACACAAGGAATGTAACGTTTGTAAGTGGAGGTTCCACAGTTGAT
CCCGCGATGCACGAATGAACAGGAGAAGTACTTCAAAAAGACGCATGAAA
CTTCTCATGTACTTTGACTGATTGACGAGTGTGGTATCAAAATCCTTTTG
AAGTTTGGCGAAATCGATTTTCGTCAGCACGTCTTGGATAGAATCGTGgg
ctttttcaattttgatcttGTTGGATGATGAATACGCCGAGACTTCCGAG
ATGGAATGAACAACTACTGCTCGAAGGTCCCGTTCAATTGCTTGGTTTTT
GTTGATGAAGCAATCCATGTAACGCGAGAAGATTGCCAGGTAGAGAGCGA
AGTATGCTTCGAGCGATCGGTAAAGATGTTTCCCATCTTTG Coding sequence (CDS) from alignment at scaffold_193:40441..41531 >TCONS_00051083 ID=TCONS_00051083|Name=TCONS_00051083|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_193:40441..41531 (Clytia hemisphaerica)
TTAAGGTGAATCTTTAAATGTACCTTCGAGCTTTTCTGTTAAAAACGATC
GGTATCGACTTTGACCGATTTCTTCAATTTGGATCAAGGATTTCGATATC
TTTACAGGAAGAACTTTCTTGGTCAAGATATTGAACACATCACCACCGTC
ACCAAAACTATCTGCTTCCGTGTTATCTTCATTTGATTGATTTGGCGTTG
TTTCTTTTGTGCTAAATACCACTTCATGCTCATCCAAAACGCGTGAAATC
TTCTCTGTATTTGAGCTGACTCTCACATTCTTCGAACCAGACAATTGGTA
ATGCTCATCTCTTTTACGAGCACCATCTTCTTCGATGCCAAAAGTTTCAC
AAAATGTTTCGACCAAATTTCCCATCTCTGCTGTAGTTAAGAAATACTCG
TCCAAGGCTTGTTGGTTGTGAGCGATTCCTCGTATTCCTCCAATAACTTT
GAGCGCTCTGTTCTCTTGTTCTATACCGTGATCTGCACCGATTGAGCTGA
ATGGAACGTGCGACTTGTTGATGCAAAACCCTCCATTAGAAAGAAGCTCC
CATGTTTCTTTGTCAGCTTTTTCCAGAGCGAACATTTGTGATAGATACAC
CGGTGTCATTCTTGCGTAGTTTAGCAtgtcaaaagcaaaaaaataggGAC
ACAAGGAATGTAACGTTTGTAAGTGGAGGTTCCACAGTTGATCCCGCGAT
GCACGAATGAACAGGAGAAGTACTTCAAAAAGACGCATGAAACTTCTCAT
GTACTTTGACTGATTGACGAGTGTGGTATCAAAATCCTTTTGAAGTTTGG
CGAAATCGATTTTCGTCAGCACGTCTTGGATAGAATCGTGggctttttca
attttgatcttGTTGGATGATGAATACGCCGAGACTTCCGAGATGGAATG
AACAACTACTGCTCGAAGGTCCCGTTCAATTGCTTGGTTTTTGTTGATGA
AGCAATCCATGTAACGCGAGAAGATTGCCAGGTAGAGAGCGAAGTATGCT
TCGAGCGATCGGTAAAGATGTTTCCCATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051083-exon-scaffold_193-1491911889:40441..41531 | TCONS_00051083-exon-scaffold_193-1491911889:40441..41531 | Clytia hemisphaerica | exon |
| TCONS_00051083-exon-scaffold_193-1510915933:40441..41531 | TCONS_00051083-exon-scaffold_193-1510915933:40441..41531 | Clytia hemisphaerica | exon |
| TCONS_00051083-exon-scaffold_193-1575043694:40441..41531 | TCONS_00051083-exon-scaffold_193-1575043694:40441..41531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:40441..41531 . |
Blast
The following BLAST results are available for this feature:
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