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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051063 ID=TCONS_00051063|Name=TCONS_00051063|organism=Clytia hemisphaerica|type=transcript|length=2342bp
CAGCTGTTCCATGCGTAATATTGTGATTTCTTGAAGTGCTTGTCTTGTGG
TTAACCTTTAATTGTTACTATCAACATCAAATTTTCAGGTTTGCGAGCTC
ATCCTTTGATCAATGGACAAAGATTCACAAAAGTTACGGCAGCTACGTCA
GTGCATTCAATCTTCAACAGAAAGAATGATAATACGTGGCAGTACATGAT
CATGGGTTCGGATTTTGTGATCGATCTACTAGCCATCATAGTCATAATGA
AACCTTTGCGCACATTGATATTGCTTGTTCAGTCGCTGGACTGCCCAGTC
TggaagcttaaaaagctctatcaaACGGTGAAGAAACATTTGCAACAAGC
ATcttcaaaatatgACAAAACAACGTACCCTACCCTTTTCAAACACAAAA
ATTCCCTTGAGCCTGGAAAAACGTTGCAAGATGTGACTTTGATGGAAGGC
TGGTTGGTAAACACGTCCCAGGGGAGAAGTGGTGTTAAATGGTACATAAG
AAACAAAACTGAGATCAAACGGGATCATTTACGcttcGCCAAAGATCTAA
TGGAATCCCTGGAAAAAATGATTACTCCAGTCTTGAATCAAGACCATATC
AAGGCGCTTGAAGTGTTTGATATGGGGGAGCTAGTGAAACTTAATTGTGG
AACAAGGATTGGAGATCGTATTCAATTTACAAGAGATGAAGGGGAGTACG
AAGAATATGGTGTCATCCAATGCAAAAAGTTTATGTCATCCGTTTGCAAA
ATGCCCAGCTTAGAAGAATTCGGCATCAATTTAGACCCTAGGCTAAGGTA
TTTGATTCCTCCTATATTTATTGTCTTGACAGGTGTTTGATCAATCAACG
ACTGATTATAtTCCAAATACATGCGTCAGTTGAAAGATGCAGTCCGTTTG
GCAGTTTGGGATGGCCTCGTTCCAATGTTTGGTGTGAGTGTTAAAGATGT
TGAATCTATCTCTAAAATAGAAGATGAGCTTTCTTTCGATCTCCAATTCA
ACCTTACATTCAAAAATGGAGAAGAAAAGGAAGTCAAATTGAACGAGCAA
TTGGTCTATGAGAGCTTTTATAATAATGAAAGCCTTTACAAAGTTGCAGA
AAAGCCAGTATGTGCGATGATCGACATTGCTCTGGCAAAAGGTGGACCTG
AAAGCATAGCAGAATCGTACTATGCATGTATGCGTGGCCAGCAACAGGCT
GGTGGTCAAAGCAACGACACATTAAGCTTGAGAACCAAGTTATCGTGGTG
TCTCCCATCCTTTGAAAACTGTCAAAACGGGGGCTTACAGCGTCCCCCAG
TCCCCCCTGAACAAAAAACGCCTACGGCGTTTTACACGCCTCGCCGCCAG
CAATTATATACCCTTGCCATACCATTAAAGTTTTCACAAAACACCTTCTG
CGTCAAATTTCGCCGATTCCATACTggttggtatcttcgttgcgtcacag
cgaaaggtttgtttttattttagtttgtatctttgaaagaccccatcgga
tttaggcagcgctgtcggatttaggacctctcatggaatgatttttttgt
catgttGTCCATACACGGTTCAGCGTATTTGAGTAAACGCTTTTACGACA
AGGATCATAGATACGCCATCGAATATTGGGTGATTGCGGTCAGTAACATT
TGTTGAGGAGGTATGCTGCGAAGAACAGACACATTATTTATTATTGGACC
TTTAttgaagtttttgacttttctaaaaaagcgatgcattgtgggattgt
ttcaagTGTATTACAAATAGGAACTTAGGAACTCTTAGGaactcctcgag
ggaattctattgtaatacacatcgcttttttagaaaaatcaaaaacttca
atAAAGGTCTATTATTCAACACGACATAAGAAAAACTTTCCCATCAAGAT
TCAATATTAATATTATGTAGCTACGTATAATATAATGCAACACAAGAAGG
GGGcaaattgtgaatgttttggtgGTACATGGGATGTTTTGTGTGTGACA
AAACATGTTAAAGCAGCAATCAGAAAatacacttccattttatttttaat
ttttttattaagtcagtagtagaaaatttcaaattcactgctgctggtgg
tcattattcagttcaaacactttaaataatttccaaataaaataagctct
ttcacagcattttCCTCATAATTCTTGAACATGTTACTGGCAAAATGAAA
TGCATCCGTAGAGGTTCGCTTTTTTGATTGCATGGATGTATGAAAACTAG
TAGTGAATTTATAAATtagtgatatttttgtaaaaatggattttattcTT
TACCACTTTTAGTCATAACATCCTAAACTATCAAAAAGTCCA Run BLAST on NCBI transcript from alignment at scaffold_193:46818..49744- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051063 ID=TCONS_00051063|Name=TCONS_00051063|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at scaffold_193:46818..49744- (Clytia hemisphaerica)
CAGCTGTTCCATGCGTAATATTGTGATTTCTTGAAGTGCTTGTCTTGTGG
TTAACCTTTAATTGTTACTATCAACATCAAATTTTCAGGTTTGCGAGCTC
ATCCTTTGATCAATGGACAAAGATTCACAAAAGTTACGGCAGCTACGTCA
GTGCATTCAATCTTCAACAGAAAGAATGATAATACGTGGCAGTACATGAT
CATGGGTTCGGATTTTGTGATCGATCTACTAGCCATCATAGTCATAATGA
AACCTTTGCGCACATTGATATTGCTTGTTCAGTCGCTGGACTGCCCAGTC
TGGAAGCTTAAAAAGCTCTATCAAACGGTGAAGAAACATTTGCAACAAGC
ATGTAAGAGTTATTCTGTAATTTCTTTCCAATTCTTTAAATTTCGACATC
TATTTAAAATTATAACATTGTTTAGGCCTACTTTAGACAGTAGACTCTCT
GCTGACTTTCGTCAAAATTGAGGGAAGGCAAGGCAGAAAGTCGGCCGTCT
AAACTAGAGCTTAGTTACATATCTTTCATAGTCAGGCTGTAAACATCGTT
TTTGTAGCATCATCATTCCTTATAAAGCTTGAAGACTGCTTTAGATAAAA
CGGATGTCTTTTTTTAGCTTCAAAATATGACAAAACAACGTACCCTACCC
TTTTCAAACACAAAAATTCCCTTGAGCCTGGAAAAACGTTGCAAGATGTG
ACTTTGATGGAAGGCTGGTTGGTAAACACGTCCCAGGGGAGAAGTGGTGT
TAAATGGTACATAAGAAACAAAACTGAGATCAAACGGGATCATTTACGGT
AGATACTATTGTTTAAACATTTTATATAAGTAACCAAAGTTTGTGTATTT
TTTCTAATCAACTATGTTACCCACTTATAGACAAATCTCAAACTTGACAC
AGCCAGATTTATCAACATACCTCTAAAATACTGACTATTGACTATAATTA
TAATATATTCATTTCATTTCTTTTTTTCAGCTTCGCCAAAGATCTAATGG
AATCCCTGGAAAAAATGATTACTCCAGTCTTGAATCAAGACCATATCAAG
GCGCTTGAAGTGTTTGATATGGGGGAGCTAGTGAAACTTAATTGTGGAAC
AAGGATTGGAGATCGTATTCAATTTACAAGAGATGAAGGGGAGTACGAAG
AATATGGTGTCATCCAATGCAAAAAGTTTATGTCATCCGTTTGCAAAATG
CCCAGCTTAGAAGAATTCGGCATCAATTTAGACCCTAGGCTAAGGTATTT
GATTCCTCCTATATTTATTGTCTTGACAGGTGTTTGATCAATCAACGACT
GATTATAGTAAGTATGAGGGTATGAGGGGACTGGTAGTATTTTTAAGATA
CATTGGTAATATTATCAAATGAAAATGTTTTAGTCATATCATGATAATAT
AGAAATAGGTACAAGATCTAAAAATATGAAAATGATTTTTTACAGTTCCA
AATACATGCGTCAGTTGAAAGATGCAGTCCGTTTGGCAGTTTGGGATGGC
CTCGTTCCAATGTTTGGTGTGAGTGTTAAAGATGTTGAATCTATCTCTAA
AATAGAAGATGAGCTTTCTTTCGATCTCCAATTCAACCTTACATTCAAAA
ATGGAGAAGAAAAGGAAGTCAAATTGAACGAGCAATTGGTCTATGAGAGC
TTTTATAATAATGAAAGCCTTTACAAAGTTGCAGAAAAGCCAGTATGTGC
GATGATCGACATTGCTCTGGCAAAAGGTGGACCTGAAAGCATAGCAGAAT
CGTACTATGCATGTATGCGTGGCCAGCAACAGGCTGGTGGTCAAAGCAAC
GACACATTAAGCTTGAGAACCAAGTTATCGTGGTGTCTCCCATCCTTTGA
AAACTGTCAAAACGGGGGCTTACAGCGTCCCCCAGTCCCCCCTGAACAAA
AAACGCCTACGGCGTTTTACACGCCTCGCCGCCAGCAATTATATACCCTT
GCCATACCATTAAAGTTTTCACAAAACACCTTCTGCGTCAAATTTCGCCG
ATTCCATACTGGTTGGTATCTTCGTTGCGTCACAGCGAAAGGTTTGTTTT
TATTTTAGTTTGTATCTTTGAAAGACCCCATCGGATTTAGGCAGCGCTGT
CGGATTTAGGACCTCTCATGGAATGATTTTTTTGTCATGTTGTCCATACA
CGGTTCAGCGTATTTGAGTAAACGCTTTTACGACAAGGATCATAGATACG
CCATCGAATATTGGGTGATTGCGGTCAGTAACATTTGTTGAGGAGGTATG
CTGCGAAGAACAGACACATTATTTATTATTGGACCTTTATTGAAGTTTTT
GACTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCAAGTGTATTACA
AATAGGAACTTAGGAACTCTTAGGAACTCCTCGAGGGAATTCTATTGTAA
TACACATCGCTTTTTTAGAAAAATCAAAAACTTCAATAAAGGTCTATTAT
TCAACACGACATAAGAAAAACTTTCCCATCAAGATTCAATATTAATATTA
TGTAGCTACGTATAATATAATGCAACACAAGAAGGGGGCAAATTGTGAAT
GTTTTGGTGGTACATGGGATGTTTTGTGTGTGACAAAACATGTTAAAGCA
GCAATCAGAAAATACACTTCCATTTTATTTTTAATTTTTTTATTAAGTCA
GTAGTAGAAAATTTCAAATTCACTGCTGCTGGTGGTCATTATTCAGTTCA
AACACTTTAAATAATTTCCAAATAAAATAAGCTCTTTCACAGCATTTTCC
TCATAATTCTTGAACATGTTACTGGCAAAATGAAATGCATCCGTAGAGGT
TCGCTTTTTTGATTGCATGGATGTATGAAAACTAGTAGTGAATTTATAAA
TTAGTGATATTTTTGTAAAAATGGATTTTATTCTTTACCACTTTTAGTCA
TAACATCCTAAACTATCAAAAAGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051063-exon-scaffold_193-1575043694:49393..49744 | TCONS_00051063-exon-scaffold_193-1575043694:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1575043694:48947..49127 | TCONS_00051063-exon-scaffold_193-1575043694:48947..49127 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1575043694:48438..48764 | TCONS_00051063-exon-scaffold_193-1575043694:48438..48764 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1575043694:46818..48299 | TCONS_00051063-exon-scaffold_193-1575043694:46818..48299 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1510915933:49393..49744 | TCONS_00051063-exon-scaffold_193-1510915933:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1510915933:48947..49127 | TCONS_00051063-exon-scaffold_193-1510915933:48947..49127 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1510915933:48438..48764 | TCONS_00051063-exon-scaffold_193-1510915933:48438..48764 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1510915933:46818..48299 | TCONS_00051063-exon-scaffold_193-1510915933:46818..48299 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1491911889:49393..49744 | TCONS_00051063-exon-scaffold_193-1491911889:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1491911889:48947..49127 | TCONS_00051063-exon-scaffold_193-1491911889:48947..49127 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1491911889:48438..48764 | TCONS_00051063-exon-scaffold_193-1491911889:48438..48764 | Clytia hemisphaerica | exon |
| TCONS_00051063-exon-scaffold_193-1491911889:46818..48299 | TCONS_00051063-exon-scaffold_193-1491911889:46818..48299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:46818..49744 - |
Blast
The following BLAST results are available for this feature:
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