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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051065 ID=TCONS_00051065|Name=TCONS_00051065|organism=Clytia hemisphaerica|type=transcript|length=2161bp
CAGCTGTTCCATGCGTAATATTGTGATTTCTTGAAGTGCTTGTCTTGTGG
TTAACCTTTAATTGTTACTATCAACATCAAATTTTCAGGTTTGCGAGCTC
ATCCTTTGATCAATGGACAAAGATTCACAAAAGTTACGGCAGCTACGTCA
GTGCATTCAATCTTCAACAGAAAGAATGATAATACGTGGCAGTACATGAT
CATGGGTTCGGATTTTGTGATCGATCTACTAGCCATCATAGTCATAATGA
AACCTTTGCGCACATTGATATTGCTTGTTCAGTCGCTGGACTGCCCAGTC
TggaagcttaaaaagctctatcaaACGGTGAAGAAACATTTGCAACAAGC
ATcttcGCCAAAGATCTAATGGAATCCCTGGAAAAAATGATTACTCCAGT
CTTGAATCAAGACCATATCAAGGCGCTTGAAGTGTTTGATATGGGGGAGC
TAGTGAAACTTAATTGTGGAACAAGGATTGGAGATCGTATTCAATTTACA
AGAGATGAAGGGGAGTACGAAGAATATGGTGTCATCCAATGCAAAAAGTT
TATGTCATCCGTTTGCAAAATGCCCAGCTTAGAAGAATTCGGCATCAATT
TAGACCCTAGGCTAAGGTATTTGATTCCTCCTATATTTATTGTCTTGACA
GGTGTTTGATCAATCAACGACTGATTATAtTCCAAATACATGCGTCAGTT
GAAAGATGCAGTCCGTTTGGCAGTTTGGGATGGCCTCGTTCCAATGTTTG
GTGTGAGTGTTAAAGATGTTGAATCTATCTCTAAAATAGAAGATGAGCTT
TCTTTCGATCTCCAATTCAACCTTACATTCAAAAATGGAGAAGAAAAGGA
AGTCAAATTGAACGAGCAATTGGTCTATGAGAGCTTTTATAATAATGAAA
GCCTTTACAAAGTTGCAGAAAAGCCAGTATGTGCGATGATCGACATTGCT
CTGGCAAAAGGTGGACCTGAAAGCATAGCAGAATCGTACTATGCATGTAT
GCGTGGCCAGCAACAGGCTGGTGGTCAAAGCAACGACACATTAAGCTTGA
GAACCAAGTTATCGTGGTGTCTCCCATCCTTTGAAAACTGTCAAAACGGG
GGCTTACAGCGTCCCCCAGTCCCCCCTGAACAAAAAACGCCTACGGCGTT
TTACACGCCTCGCCGCCAGCAATTATATACCCTTGCCATACCATTAAAGT
TTTCACAAAACACCTTCTGCGTCAAATTTCGCCGATTCCATACTggttgg
tatcttcgttgcgtcacagcgaaaggtttgtttttattttagtttgtatc
tttgaaagaccccatcggatttaggcagcgctgtcggatttaggacctct
catggaatgatttttttgtcatgttGTCCATACACGGTTCAGCGTATTTG
AGTAAACGCTTTTACGACAAGGATCATAGATACGCCATCGAATATTGGGT
GATTGCGGTCAGTAACATTTGTTGAGGAGGTATGCTGCGAAGAACAGACA
CATTATTTATTATTGGACCTTTAttgaagtttttgacttttctaaaaaag
cgatgcattgtgggattgtttcaagTGTATTACAAATAGGAACTTAGGAA
CTCTTAGGaactcctcgagggaattctattgtaatacacatcgctttttt
agaaaaatcaaaaacttcaatAAAGGTCTATTATTCAACACGACATAAGA
AAAACTTTCCCATCAAGATTCAATATTAATATTATGTAGCTACGTATAAT
ATAATGCAACACAAGAAGGGGGcaaattgtgaatgttttggtgGTACATG
GGATGTTTTGTGTGTGACAAAACATGTTAAAGCAGCAATCAGAAAataca
cttccattttatttttaatttttttattaagtcagtagtagaaaatttca
aattcactgctgctggtggtcattattcagttcaaacactttaaataatt
tccaaataaaataagctctttcacagcattttCCTCATAATTCTTGAACA
TGTTACTGGCAAAATGAAATGCATCCGTAGAGGTTCGCTTTTTTGATTGC
ATGGATGTATGAAAACTAGTAGTGAATTTATAAATtagtgatatttttgt
aaaaatggattttattcTTTACCACTTTTAGTCATAACATCCTAAACTAT
CAAAAAGTCCA Run BLAST on NCBI transcript from alignment at scaffold_193:46818..49744- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051065 ID=TCONS_00051065|Name=TCONS_00051065|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at scaffold_193:46818..49744- (Clytia hemisphaerica)
CAGCTGTTCCATGCGTAATATTGTGATTTCTTGAAGTGCTTGTCTTGTGG
TTAACCTTTAATTGTTACTATCAACATCAAATTTTCAGGTTTGCGAGCTC
ATCCTTTGATCAATGGACAAAGATTCACAAAAGTTACGGCAGCTACGTCA
GTGCATTCAATCTTCAACAGAAAGAATGATAATACGTGGCAGTACATGAT
CATGGGTTCGGATTTTGTGATCGATCTACTAGCCATCATAGTCATAATGA
AACCTTTGCGCACATTGATATTGCTTGTTCAGTCGCTGGACTGCCCAGTC
TGGAAGCTTAAAAAGCTCTATCAAACGGTGAAGAAACATTTGCAACAAGC
ATGTAAGAGTTATTCTGTAATTTCTTTCCAATTCTTTAAATTTCGACATC
TATTTAAAATTATAACATTGTTTAGGCCTACTTTAGACAGTAGACTCTCT
GCTGACTTTCGTCAAAATTGAGGGAAGGCAAGGCAGAAAGTCGGCCGTCT
AAACTAGAGCTTAGTTACATATCTTTCATAGTCAGGCTGTAAACATCGTT
TTTGTAGCATCATCATTCCTTATAAAGCTTGAAGACTGCTTTAGATAAAA
CGGATGTCTTTTTTTAGCTTCAAAATATGACAAAACAACGTACCCTACCC
TTTTCAAACACAAAAATTCCCTTGAGCCTGGAAAAACGTTGCAAGATGTG
ACTTTGATGGAAGGCTGGTTGGTAAACACGTCCCAGGGGAGAAGTGGTGT
TAAATGGTACATAAGAAACAAAACTGAGATCAAACGGGATCATTTACGGT
AGATACTATTGTTTAAACATTTTATATAAGTAACCAAAGTTTGTGTATTT
TTTCTAATCAACTATGTTACCCACTTATAGACAAATCTCAAACTTGACAC
AGCCAGATTTATCAACATACCTCTAAAATACTGACTATTGACTATAATTA
TAATATATTCATTTCATTTCTTTTTTTCAGCTTCGCCAAAGATCTAATGG
AATCCCTGGAAAAAATGATTACTCCAGTCTTGAATCAAGACCATATCAAG
GCGCTTGAAGTGTTTGATATGGGGGAGCTAGTGAAACTTAATTGTGGAAC
AAGGATTGGAGATCGTATTCAATTTACAAGAGATGAAGGGGAGTACGAAG
AATATGGTGTCATCCAATGCAAAAAGTTTATGTCATCCGTTTGCAAAATG
CCCAGCTTAGAAGAATTCGGCATCAATTTAGACCCTAGGCTAAGGTATTT
GATTCCTCCTATATTTATTGTCTTGACAGGTGTTTGATCAATCAACGACT
GATTATAGTAAGTATGAGGGTATGAGGGGACTGGTAGTATTTTTAAGATA
CATTGGTAATATTATCAAATGAAAATGTTTTAGTCATATCATGATAATAT
AGAAATAGGTACAAGATCTAAAAATATGAAAATGATTTTTTACAGTTCCA
AATACATGCGTCAGTTGAAAGATGCAGTCCGTTTGGCAGTTTGGGATGGC
CTCGTTCCAATGTTTGGTGTGAGTGTTAAAGATGTTGAATCTATCTCTAA
AATAGAAGATGAGCTTTCTTTCGATCTCCAATTCAACCTTACATTCAAAA
ATGGAGAAGAAAAGGAAGTCAAATTGAACGAGCAATTGGTCTATGAGAGC
TTTTATAATAATGAAAGCCTTTACAAAGTTGCAGAAAAGCCAGTATGTGC
GATGATCGACATTGCTCTGGCAAAAGGTGGACCTGAAAGCATAGCAGAAT
CGTACTATGCATGTATGCGTGGCCAGCAACAGGCTGGTGGTCAAAGCAAC
GACACATTAAGCTTGAGAACCAAGTTATCGTGGTGTCTCCCATCCTTTGA
AAACTGTCAAAACGGGGGCTTACAGCGTCCCCCAGTCCCCCCTGAACAAA
AAACGCCTACGGCGTTTTACACGCCTCGCCGCCAGCAATTATATACCCTT
GCCATACCATTAAAGTTTTCACAAAACACCTTCTGCGTCAAATTTCGCCG
ATTCCATACTGGTTGGTATCTTCGTTGCGTCACAGCGAAAGGTTTGTTTT
TATTTTAGTTTGTATCTTTGAAAGACCCCATCGGATTTAGGCAGCGCTGT
CGGATTTAGGACCTCTCATGGAATGATTTTTTTGTCATGTTGTCCATACA
CGGTTCAGCGTATTTGAGTAAACGCTTTTACGACAAGGATCATAGATACG
CCATCGAATATTGGGTGATTGCGGTCAGTAACATTTGTTGAGGAGGTATG
CTGCGAAGAACAGACACATTATTTATTATTGGACCTTTATTGAAGTTTTT
GACTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCAAGTGTATTACA
AATAGGAACTTAGGAACTCTTAGGAACTCCTCGAGGGAATTCTATTGTAA
TACACATCGCTTTTTTAGAAAAATCAAAAACTTCAATAAAGGTCTATTAT
TCAACACGACATAAGAAAAACTTTCCCATCAAGATTCAATATTAATATTA
TGTAGCTACGTATAATATAATGCAACACAAGAAGGGGGCAAATTGTGAAT
GTTTTGGTGGTACATGGGATGTTTTGTGTGTGACAAAACATGTTAAAGCA
GCAATCAGAAAATACACTTCCATTTTATTTTTAATTTTTTTATTAAGTCA
GTAGTAGAAAATTTCAAATTCACTGCTGCTGGTGGTCATTATTCAGTTCA
AACACTTTAAATAATTTCCAAATAAAATAAGCTCTTTCACAGCATTTTCC
TCATAATTCTTGAACATGTTACTGGCAAAATGAAATGCATCCGTAGAGGT
TCGCTTTTTTGATTGCATGGATGTATGAAAACTAGTAGTGAATTTATAAA
TTAGTGATATTTTTGTAAAAATGGATTTTATTCTTTACCACTTTTAGTCA
TAACATCCTAAACTATCAAAAAGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051065-exon-scaffold_193-1575043694:49393..49744 | TCONS_00051065-exon-scaffold_193-1575043694:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1575043694:48438..48764 | TCONS_00051065-exon-scaffold_193-1575043694:48438..48764 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1575043694:46818..48299 | TCONS_00051065-exon-scaffold_193-1575043694:46818..48299 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1510915933:49393..49744 | TCONS_00051065-exon-scaffold_193-1510915933:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1510915933:48438..48764 | TCONS_00051065-exon-scaffold_193-1510915933:48438..48764 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1510915933:46818..48299 | TCONS_00051065-exon-scaffold_193-1510915933:46818..48299 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1491911889:49393..49744 | TCONS_00051065-exon-scaffold_193-1491911889:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1491911889:48438..48764 | TCONS_00051065-exon-scaffold_193-1491911889:48438..48764 | Clytia hemisphaerica | exon |
| TCONS_00051065-exon-scaffold_193-1491911889:46818..48299 | TCONS_00051065-exon-scaffold_193-1491911889:46818..48299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:46818..49744 - |
Blast
The following BLAST results are available for this feature:
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