TCONS_00051068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051068
Unique NameTCONS_00051068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051068 ID=TCONS_00051068|Name=TCONS_00051068|organism=Clytia hemisphaerica|type=transcript|length=359bp
CACCAATAGAAAAATCAAATGTTAAGAAAGATATGATAAATCTATCAGAC
AAAATTGCTGAACTAAGTGAACAAGTCCCATACCTTGTGTCTGATCAGAA
GAAGACTTTGATCAGACCATTCCAAGGTATGACCCAGGTGGTGGATCAAA
CACGCtcgtttttcttcaaaaagtcgCTACTTTAGTtgctgaaaatgaga
aaatggaTATCGCAATGAAAATGCTTAAAGCAGTGGAACCAGACATTCCA
ATTTACCATACTAGAGCCATGCGACGGAAATTTCAACAGGAGGTCAAGCT
TCTGAGCTCGCCAACGCCTCCACATGTTTTGCGACACATTTACAAATCAT
TAACAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_193:132748..133367-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051068 ID=TCONS_00051068|Name=TCONS_00051068|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at scaffold_193:132748..133367- (Clytia hemisphaerica)
CACCAATAGAAAAATCAAATGTTAAGAAAGATATGATAAATCTATCAGAC
AAAATTGCTGAACTAAGTGAACAAGTCCCATACCTTGTGTCTGATCAGAA
GAAGACTTTGATCAGACCATTCCAAGGTTTCGTCCGTTGAAATTGCTCAA
AGAAATAGCTCTAGAAGTACCTTGCATTTCTTTAAGGTATAAATTGATCA
TACCTATTTATCCTGTACTTCAAAAACTTAATTTTGATTGTCTAAGTCAT
GCAACAAGTTTTATTTTAATTACGTTCTGCGCCAGGACCATACATTGAAT
TTCATAAACAAACTAAAATATTATGTATAGTCAATTTCATTGTTGGGCCA
CTTTAAAACATCAAACAAATACCGCTCTTTTTTAAAGGTATGACCCAGGT
GGTGGATCAAACACGCTCGTTTTTCTTCAAAAAGTCGCTACTTTAGTTGC
TGAAAATGAGAAAATGGATATCGCAATGAAAATGCTTAAAGCAGTGGAAC
CAGACATTCCAATTTACCATACTAGAGCCATGCGACGGAAATTTCAACAG
GAGGTCAAGCTTCTGAGCTCGCCAACGCCTCCACATGTTTTGCGACACAT
TTACAAATCATTAACAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032369XLOC_032369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051068-exon-scaffold_193-1575043694:133242..133367TCONS_00051068-exon-scaffold_193-1575043694:133242..133367Clytia hemisphaericaexon
TCONS_00051068-exon-scaffold_193-1575043694:132748..132980TCONS_00051068-exon-scaffold_193-1575043694:132748..132980Clytia hemisphaericaexon
TCONS_00051068-exon-scaffold_193-1510915933:133242..133367TCONS_00051068-exon-scaffold_193-1510915933:133242..133367Clytia hemisphaericaexon
TCONS_00051068-exon-scaffold_193-1510915933:132748..132980TCONS_00051068-exon-scaffold_193-1510915933:132748..132980Clytia hemisphaericaexon
TCONS_00051068-exon-scaffold_193-1491911889:133242..133367TCONS_00051068-exon-scaffold_193-1491911889:133242..133367Clytia hemisphaericaexon
TCONS_00051068-exon-scaffold_193-1491911889:132748..132980TCONS_00051068-exon-scaffold_193-1491911889:132748..132980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:132748..133367 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236518	0.461285	0.535596	0.261999	1.27583	1.00818	1.82449	0.569355	1.99309	0	4.31324	2.20528	1.10111	2.94045	3.62618	2.5943	3.90617	5.82357	3.77136	1.84168	2.28679	1.67313	0.813561	1.23274	0	0.226635	2.27019	0	1.05007	0.802389
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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