TCONS_00051069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051069
Unique NameTCONS_00051069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051069 ID=TCONS_00051069|Name=TCONS_00051069|organism=Clytia hemisphaerica|type=transcript|length=2555bp
AAATAATGTCTCAGCAGGAAATTGTTATCAACGTAGCTGttgttaaaaac
aaaattaaaaaagtttttacttgTGAGACTTTTCCGGAGATCCTCATTGG
AGCAAAATGACGAAGCAGAGATGAATCTTTGTCTATAGCAAATGATATAT
TCACGGTTAAGACAGTTAAGTACACTCTAACTTTTACAACAACAGAAGAA
AATGTGGTTGAAAATTCTCTGCGTTCTATGGTGGACGTTTTAATGAGAAA
ATCTTTGGCAATTCTAAAGACTCTTCCAGAAAAGGATAAAAAGATTGCAC
TTCACAACGAAATTATCAGGGATGTACAGCAAAAGCCTATCTTCGCTTCA
AAATCCCAGGATGAAGGACACAAAATATCTAGATGGCCGTCCAGAAACAA
TAAACCAAGCCTCGAGCAAGAGAAAATCAGTGGTTGAGATTCCAAAAAGG
TTTCATAAATATAAAGGCTACCAGGATTGGaagaaatggagaaaaaaaac
atcaccAATTGACATGAAAAGCTGTCAATCACACGCAGGTTCAAAAAGTT
GCTTTGATGGAAGTATTAGAAAAACGTGCGATTGTTTGGCCTGAAGACTG
GAAAGAAGACATTGTTGGCCTTTGTACATCATTTTCTTCATACAGTGATG
AATTGAAAGTGGCAAATGAGAATCAACAAAACAGACAATCACAATTAAAC
CCTTCACGAGAGATTTGAAAATGTGCTAACTTTCAATACTGGTCTCCCGT
CCCACGAGACCATgtcaacaaagatttggaaattcTATCAAGCAAAGTGT
CGGAATCAAATAAAAACGAACCTTTTCTATTGTCAGAGGAACATTTTGAT
GAAACCATTCCACGATCTCGCCAATTAAAACGACTAAAGGAAATCGCGTT
AGAAGTTCCATGCATTTCTTTAAGGTAAGGAAAGGTTAAAAAGTATTCAT
TATTTTGTAacgttttgttgattttattgcTCTCGTATGtaccttttttt
ttcttcaaaatcctTTGCTAAAGGTAAGTAGAGGGCAAAAAGTAAGGAAA
TTAGATTTCTATGTTTTTAACTGTAGAAAAGCTTTTTGCAAACTGAGTTG
CGAGTGAACTGGTGTTTTTATTgagttgatatttttctttgttataAAGA
TCAATTTAATCTTATTctcttctttttgtttacaCTATTGCTTGACGTTT
CAAAACGTTTTACCTATTTTATCAACATAAGTATTTTACAGCCCTGTATC
ATCAACcgtatcaaaagaaaaaacttctCAGAAAGTGGGATTTCAACGAG
ACAGGGTTTAGCAAGTTAAGCTTGTTCTTGTTCTTggctttgattatttt
tttttaacattcaaaatgtttcaatattgAATTTCTTTATATATACGATC
CTGGTGGTGTGGTGGATCCAGCACTTTACTATTCATACAAAAAGTTGCCC
CACTGGCTAATGAAAACGAAAGAATGGACACTGTTACAAAAATGCTGAAA
GCTGTAGAACCTGAAATCCCTATCTACCATACTCGAGCAATGCGTAAACA
GTTTCATGAAGAAGTCAAGCTCATTAGTTCAAAAACTCCTGCACATGTCA
TAAGACATATCTACAAGACATTGACTGGGGATCTAAGTTCAGAACCAATA
TCCCAGGAAATTGACGAGCGTGTACAGTTAGCCATTGAAACTGAAGATCC
CGACCTGTTACTTGATCTCCGTCATCTGAGCAAAGGAAGACCAGGGGAca
cttttgatatcttttttgCAGAATTGGAGAAAATGGTGGATGAAGTCACA
GCTGCTGATGACCGGAGACATGGAGTTGTTCACATGAGCGAGTTCTTAAG
TATCCATCACTTGATTGAACAGGTGAAAAAGCGTGTAGAAAAATTCCCTC
CCAAACAACAGTAATACACGCTTTTGCCCCAACTAACATCCTCAAGAAAA
CTTCTCAGTATTACACTTGGCGCATCAAACTCAAACACGCTATTCAAAGA
AGACAGTTACATGCCTTCCACACAGATGCACATTGGTGCTCCGCTCTTTA
CCGATACCTAAGAGAGATGTCCATCGAGAACAGGGAGAAATGCATTTTCA
TCTCTTGTGATAAGGCAAAAGTTGACTTTGGTGAGCCAGGAGCATTGGTT
TCATATGGCGTACGTGGGAGAAAGAGCCCTATTTCAACCACATCCATGTT
AGGTGCCCTCGATCATGATGTGAATCAAAAAGgcaAATGTCAGTGCAGCA
TCAGTTGCTACAATTGAATGTGGATAATCCATTTGTTGGTGCTAGCCCTG
TTGGTATAATTTCCTGTTCATGCCACGAAGATTTTTGTTTGGAGATAAAA
TGTCCTTCATCCATAAGTCATTAATCGCCAACCGATGAAAAAACAAAGTT
GCCTTACATTAAAGATTCTAAATTGAAAGACACTCATGGTTATTATTCCC
AGTGCCAGCTACAAATGGGTATAACTGGTTTGAAAAAATTGCTccttttt
agtttaaaagtGCTACTTTTTAGTTTATACAGAACATGGATATCTGATAG
ACATT
Run BLAST on NCBI

transcript from alignment at scaffold_193:177326..181017-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051069 ID=TCONS_00051069|Name=TCONS_00051069|organism=Clytia hemisphaerica|type=transcript|length=3692bp|location=Sequence derived from alignment at scaffold_193:177326..181017- (Clytia hemisphaerica)
AAATAATGTCTCAGCAGGAAATTGTTATCAACGTAGCTGTTGTTAAAAAC
AAAATTAAAAAAGTTTTTACTTGTGAGACTTTTCCGGAGATCCTCATTGG
AGCAAAATGACGAAGCAGAGATGAATCTTTGTCTATAGCAAATGATATAT
TCACGGTTAAGACAGTTAAGTACACTCTAACTTTTACAACAACAGAAGAA
AATGTGGTTGAAAATTCTCTGCGTTCTATGGTGGACGTTTTAATGAGAAA
ATCTTTGGCAATTCTAAAGACTCTTCCAGAAAAGGATAAAAAGATTGCAC
TTCACAACGAAATTATCAGGGATGTACAGCAAAAGCCTATCTTCGCTTCA
AAATCCCAGGATGAAGGACACAAAATATCTAGATGGCCGTCCAGAAACAA
TAAACCAAGCCTCGAGCAAGAGAAAATCAGTGGTTGAGATTCCAAAAAGG
TAATTAAATCTGTCTAAAATGTTTTCGAAGGGCTTTCTCAAGATCGAAAG
GAAAAGGAGTGTTTTATCATTGAAAAGATCTTACTCAAAGAATTTCACAT
TTTATTTTATTTTAAAAGATTAAACATTCTATGAAGTTTTTGCAAATTAA
GGTGTATTGAATTTTTTTAAATTGAAATTAAACTTTCGAATCTTTCAGTA
TATATACACTGGGAATTATTCACTTGACAATCCTACATTGACACGACCGG
ACGACAATTACATTTACCTACGGTGAAACCTTTCCCTTAAAGTACTATGT
ACTCTAATTTTCGGCAACGAAAATAAACTTAAGTGACTGTCGTGACTGTA
CACTTTTAAACGTTTTTGAAGACCTGCATGGTCTTTTCAGTTGAAATAAC
ATAGACCGTTTCCATTAGATGAGACGATTTGCTTCCTTCAAATATTCGAG
TTCTTTTTCGCTTTTTTACAGGTTTCATAAATATAAAGGCTACCAGGATT
GGAAGAAATGGAGAAAAAAAACATCACCAATTGACATGAAAAGCTGTCAA
TCACACGCAGGTTCAAAAAGTACTTTTACACTTTTATACTAACTTTCCTG
TTTTGAAAGTGAATTTGTATTCACCCTTATTAGTAGCTTTTTTGGACTAA
AATTTCCATCTAAAGCTTGACGGAGTCTTGCTTTTATTTCCAGGATAGCA
GTTTTAGTACAGCAGTTTTTCCTAATATGTCTAATACTAAATAAGCATAC
TTGTTTCATTTTAGGTTGCTTTGATGGAAGTATTAGAAAAACGTGCGATT
GTTTGGCCTGAAGACTGGAAAGAAGACATTGTTGGCCTTTGTACATCATT
TTCTTCATACAGTGATGAATTGAAAGTGGCAAATGAGAATCAACAAAACA
GACAATCACAATTAAACCCTTCACGAGAGGTAAAAACTGAGAGATTATCA
CTTTTTCGTTCATTAAATAAAAAACTTGAGAAACTTATATATCAGTATCT
TTTTGAGCAGACCAGCTTTATATGCAAGAAATTGAAAGGGTTTTTTACAC
AGAACTTGAGTTCTGTGACCTTTTTTATATAAAGTTATAATTCTATTTAG
ATTTGAAAATGTGCTAACTTTCAATACTGGTCTCCCGTCCCACGAGACCA
TGTCAACAAAGATTTGGAAATTCTATCAAGCAAAGTGTCGGAATCAAATA
AAAACGAACCTTTTCTATTGTCAGAGGAACATTTTGATGAAACCATTCCA
CGATCTCGCCAATTAAAACGACTAAAGGAAATCGCGTTAGAAGTTCCATG
CATTTCTTTAAGGTAAGGAAAGGTTAAAAAGTATTCATTATTTTGTAACG
TTTTGTTGATTTTATTGCTCTCGTATGTACCTTTTTTTTTCTTCAAAATC
CTTTGCTAAAGGTAAGTAGAGGGCAAAAAGTAAGGAAATTAGATTTCTAT
GTTTTTAACTGTAGAAAAGCTTTTTGCAAACTGAGTTGCGAGTGAACTGG
TGTTTTTATTGAGTTGATATTTTTCTTTGTTATAAAGATCAATTTAATCT
TATTCTCTTCTTTTTGTTTACACTATTGCTTGACGTTTCAAAACGTTTTA
CCTATTTTATCAACATAAGTATTTTACAGCCCTGTATCATCAACCGTATC
AAAAGAAAAAACTTCTCAGAAAGTGGGATTTCAACGAGACAGGGTTTAGC
AAGTTAAGCTTGTTCTTGTTCTTGGCTTTGATTATTTTTTTTTAACATTC
AAAATGTTTCAATATTGAATTTCTTTATATATACGATCCTGGTGGTGTGG
TGGATCCAGCACTTTACTATTCATACAAAAAGTTGCCCCACTGGCTAATG
AAAACGAAAGAATGGACACTGTTACAAAAATGCTGAAAGCTGTAGAACCT
GAAATCCCTATCTACCATACTCGAGCAATGCGTAAACAGTTTCATGAAGA
AGTCAAGCTCATTAGTTCAAAAACTCCTGCACATGTCATAAGACATATCT
ACAAGACATTGACTGGGGATCTAAGTTCAGAACCAATATCCCAGGAAATT
GACGAGCGTGTACAGTTAGCCATTGAAACTGAAGATCCCGACCTGTTACT
TGATCTCCGTCATCTGAGCAAAGGAAGACCAGGGGACACTTTTGATATCT
TTTTTGCAGAATTGGAGAAAATGGTGGATGAAGTCACAGCTGCTGATGAC
CGGAGACATGGAGTTGTTCACATGAGCGAGTTCTTAAGTATCCATCACTT
GATTGAACAGGTGAAAAAGCGTGTAGAAAAATTCCCTCCCAAACAACAGT
AATACACGCTTTTGCCCCAACTAACATCCTCAAGAAAACTTCTCAGTATT
ACACTTGGCGCATCAAACTCAAACACGCTATTCAAAGAAGACAGTTACAT
GCCTTCCACACAGATGCACATTGGTGCTCCGCTCTTTACCGATACCTAAG
AGAGATGTCCATCGAGAACAGGGAGAAATGCATTTTCATCTCTTGTGATA
AGGCAAAAGTTGACTTTGGTGAGCCAGGAGCATTGGTTTCATATGGCGTA
CGTGGGAGAAAGAGCCCTATTTCAACCACATCCATGTTAGGTGCCCTCGA
TCATGATGTGAATCAAAAAGGTATACATTCTTTTTAAAGCGGCCAGAATG
AATTTTGAATGATTTTTATGGTCCTTTTTAAATTTTAAAGGAGAGATTAA
GCGATTTCGAAAATTGAGTTTAGATTCTTAAGCTTGAAAAAGAGTAATAC
ACCAATTCGGAAAAACGGCGCGTATTTTTGAAAAAAGACTGGGTAAGAGT
TTAGTGTGGTCGCAAAATCAAAGCATTGAAAAAACCTGTCATTGAAAACC
CACTTATCAGTGTGGATGATATGTTGATGATGTCGCAGTCAAAAAAGGTC
TTTTTTTGAAAATTTGAAGGCAAATGTCAGTGCAGCATCAGTTGCTACAA
TTGAATGTGGATAATCCATTTGTTGGTGCTAGCCCTGTTGGTATAATTTC
CTGTTCATGCCACGAAGATTTTTGTTTGGAGATAAAATGTCCTTCATCCA
TAAGTCATTAATCGCCAACCGATGAAAAAACAAAGTTGCCTTACATTAAA
GATTCTAAATTGAAAGACACTCATGGTTATTATTCCCAGTGCCAGCTACA
AATGGGTATAACTGGTTTGAAAAAATTGCTCCTTTTTAGTTTAAAAGTGC
TACTTTTTAGTTTATACAGAACATGGATATCTGATAGACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032370XLOC_032370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051069-exon-scaffold_193-1575043694:180569..181017TCONS_00051069-exon-scaffold_193-1575043694:180569..181017Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1575043694:179999..180096TCONS_00051069-exon-scaffold_193-1575043694:179999..180096Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1575043694:179639..179803TCONS_00051069-exon-scaffold_193-1575043694:179639..179803Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1575043694:177948..179467TCONS_00051069-exon-scaffold_193-1575043694:177948..179467Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1575043694:177326..177648TCONS_00051069-exon-scaffold_193-1575043694:177326..177648Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1510915933:180569..181017TCONS_00051069-exon-scaffold_193-1510915933:180569..181017Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1510915933:179999..180096TCONS_00051069-exon-scaffold_193-1510915933:179999..180096Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1510915933:179639..179803TCONS_00051069-exon-scaffold_193-1510915933:179639..179803Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1510915933:177948..179467TCONS_00051069-exon-scaffold_193-1510915933:177948..179467Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1510915933:177326..177648TCONS_00051069-exon-scaffold_193-1510915933:177326..177648Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1491911889:180569..181017TCONS_00051069-exon-scaffold_193-1491911889:180569..181017Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1491911889:179999..180096TCONS_00051069-exon-scaffold_193-1491911889:179999..180096Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1491911889:179639..179803TCONS_00051069-exon-scaffold_193-1491911889:179639..179803Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1491911889:177948..179467TCONS_00051069-exon-scaffold_193-1491911889:177948..179467Clytia hemisphaericaexon
TCONS_00051069-exon-scaffold_193-1491911889:177326..177648TCONS_00051069-exon-scaffold_193-1491911889:177326..177648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:177326..181017 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0366962	0	0	0.191303	0.0867313	0.174875	0.598204	0.105555	0.726129	0.797764	0	0.253416	1.69215	1.18129	0	0.892077	0.488301	0.191425	0.784965	1.22781	0.378043	0.229347	0	0	0.500277	1.19364	0.556802	0.496945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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