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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051070 ID=TCONS_00051070|Name=TCONS_00051070|organism=Clytia hemisphaerica|type=transcript|length=2845bp
AAATAATGTCTCAGCAGGAAATTGTTATCAACGTAGCTGttgttaaaaac
aaaattaaaaaagtttttacttgTGAGACTTTTCCGGAGATCCTCATTGG
AGCAAAATGACGAAGCAGAGATGAATCTTTGTCTATAGCAAATGATATAT
TCACGGTTAAGACAGTTAAGTACACTCTAACTTTTACAACAACAGAAGAA
AATGTGGTTGAAAATTCTCTGCGTTCTATGGTGGACGTTTTAATGAGAAA
ATCTTTGGCAATTCTAAAGACTCTTCCAGAAAAGGATAAAAAGATTGCAC
TTCACAACGAAATTATCAGGGATGTACAGCAAAAGCCTATCTTCGCTTCA
AAATCCCAGGATGAAGGACACAAAATATCTAGATGGCCGTCCAGAAACAA
TAAACCAAGCCTCGAGCAAGAGAAAATCAGTGGTTGAGATTCCAAAAAGG
TTTCATAAATATAAAGGCTACCAGGATTGGaagaaatggagaaaaaaaac
atcaccAATTGACATGAAAAGCTGTCAATCACACGCAGGTTGCTTTGATG
GAAGTATTAGAAAAACGTGCGATTGTTTGGCCTGAAGACTGGAAAGAAGA
CATTGTTGGCCTTTGTACATCATTTTCTTCATACAGTGATGAATTGAAAG
TGGCAAATGAGAATCAACAAAACAGACAATCACAATTAAACCCTTCACGA
GAGATTTGAAAATGTGCTAACTTTCAATACTGGTCTCCCGTCCCACGAGA
CCATgtcaacaaagatttggaaattcTATCAAGCAAAGTGTCGGAATCAA
ATAAAAACGAACCTTTTCTATTGTCAGAGGAACATTTTGATGAAACCATT
CCACGATCTCGCCAATTAAAACGACTAAAGGAAATCGCGTTAGAAGTTCC
ATGCATTTCTTTAAGGTAAGGAAAGGTTAAAAAGTATTCATTATTTTGTA
acgttttgttgattttattgcTCTCGTATGtacctttttttttcttcaaa
atcctTTGCTAAAGGTAAGTAGAGGGCAAAAAGTAAGGAAATTAGATTTC
TATGTTTTTAACTGTAGAAAAGCTTTTTGCAAACTGAGTTGCGAGTGAAC
TGGTGTTTTTATTgagttgatatttttctttgttataAAGATCAATTTAA
TCTTATTctcttctttttgtttacaCTATTGCTTGACGTTTCAAAACGTT
TTACCTATTTTATCAACATAAGTATTTTACAGCCCTGTATCATCAACcgt
atcaaaagaaaaaacttctCAGAAAGTGGGATTTCAACGAGACAGGGTTT
AGCAAGTTAAGCTTGTTCTTGTTCTTggctttgattatttttttttaaca
ttcaaaatgtttcaatattgAATTTCTTTATATATACGATCCTGGTGGTG
TGGTGGATCCAGCACTTTACTATTCATACAAAAAGTTGCCCCACTGGCTA
ATGAAAACGAAAGAATGGACACTGTTACAAAAATGCTGAAAGCTGTAGAA
CCTGAAATCCCTATCTACCATACTCGAGCAATGCGTAAACAGTTTCATGA
AGAAGTCAAGCTCATTAGTTCAAAAACTCCTGCACATGTCATAAGACATA
TCTACAAGACATTGACTGGGGATCTAAGTTCAGAACCAATATCCCAGGAA
ATTGACGAGCGTGTACAGTTAGCCATTGAAACTGAAGATCCCGACCTGTT
ACTTGATCTCCGTCATCTGAGCAAAGGAAGACCAGGGGAcacttttgata
tcttttttgCAGAATTGGAGAAAATGGTGGATGAAGTCACAGCTGCTGAT
GACCGGAGACATGGAGTTGTTCACATGAGCGAGTTCTTAAGTATCCATCA
CTTGATTGAACAGGTGAAAAAGCGTGTAGAAAAATTCCCTCCCAAACAAC
AGTAATACACGCTTTTGCCCCAACTAACATCCTCAAGAAAACTTCTCAGT
ATTACACTTGGCGCATCAAACTCAAACACGCTATTCAAAGAAGACAGTTA
CATGCCTTCCACACAGATGCACATTGGTGCTCCGCTCTTTACCGATACCT
AAGAGAGATGTCCATCGAGAACAGGGAGAAATGCATTTTCATCTCTTGTG
ATAAGGCAAAAGTTGACTTTGGTGAGCCAGGAGCATTGGTTTCATATGGC
GTACGTGGGAGAAAGAGCCCTATTTCAACCACATCCATGTTAGGTGCCCT
CGATCATGATGTGAATCAAAAAGGTATACATTCTTTTTAAAGCGGCCAGA
AtgaattttgaatgatttttatggtcctttttaaattttaaaggaGAGAT
TAAGCGATTTCGAAAATTGAGTTTAGATTCTTAAGCTTGAAAAAGAGTAA
TACACCAATTCGGAAAAACGGCgcgtatttttgaaaaaagactgGGTAAG
AGTTTAGTGTGGTCGCAAAATCAAAGCATTGAAAAAACCTGTCATTGAAA
ACCCACTTATCAGTGTGGATGATATGTTGATGATGTCGCAGTCAAAAAag
gtctttttttgaaaatttgaaggcaAATGTCAGTGCAGCATCAGTTGCTA
CAATTGAATGTGGATAATCCATTTGTTGGTGCTAGCCCTGTTGGTATAAT
TTCCTGTTCATGCCACGAAGATTTTTGTTTGGAGATAAAATGTCCTTCAT
CCATAAGTCATTAATCGCCAACCGATGAAAAAACAAAGTTGCCTTACATT
AAAGATTCTAAATTGAAAGACACTCATGGTTATTATTCCCAGTGCCAGCT
ACAAATGGGTATAACTGGTTTGAAAAAATTGCTcctttttagtttaaaag
tGCTACTTTTTAGTTTATACAGAACATGGATATCTGATAGACATT Run BLAST on NCBI transcript from alignment at scaffold_193:177326..181017- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051070 ID=TCONS_00051070|Name=TCONS_00051070|organism=Clytia hemisphaerica|type=transcript|length=3692bp|location=Sequence derived from alignment at scaffold_193:177326..181017- (Clytia hemisphaerica)
AAATAATGTCTCAGCAGGAAATTGTTATCAACGTAGCTGTTGTTAAAAAC
AAAATTAAAAAAGTTTTTACTTGTGAGACTTTTCCGGAGATCCTCATTGG
AGCAAAATGACGAAGCAGAGATGAATCTTTGTCTATAGCAAATGATATAT
TCACGGTTAAGACAGTTAAGTACACTCTAACTTTTACAACAACAGAAGAA
AATGTGGTTGAAAATTCTCTGCGTTCTATGGTGGACGTTTTAATGAGAAA
ATCTTTGGCAATTCTAAAGACTCTTCCAGAAAAGGATAAAAAGATTGCAC
TTCACAACGAAATTATCAGGGATGTACAGCAAAAGCCTATCTTCGCTTCA
AAATCCCAGGATGAAGGACACAAAATATCTAGATGGCCGTCCAGAAACAA
TAAACCAAGCCTCGAGCAAGAGAAAATCAGTGGTTGAGATTCCAAAAAGG
TAATTAAATCTGTCTAAAATGTTTTCGAAGGGCTTTCTCAAGATCGAAAG
GAAAAGGAGTGTTTTATCATTGAAAAGATCTTACTCAAAGAATTTCACAT
TTTATTTTATTTTAAAAGATTAAACATTCTATGAAGTTTTTGCAAATTAA
GGTGTATTGAATTTTTTTAAATTGAAATTAAACTTTCGAATCTTTCAGTA
TATATACACTGGGAATTATTCACTTGACAATCCTACATTGACACGACCGG
ACGACAATTACATTTACCTACGGTGAAACCTTTCCCTTAAAGTACTATGT
ACTCTAATTTTCGGCAACGAAAATAAACTTAAGTGACTGTCGTGACTGTA
CACTTTTAAACGTTTTTGAAGACCTGCATGGTCTTTTCAGTTGAAATAAC
ATAGACCGTTTCCATTAGATGAGACGATTTGCTTCCTTCAAATATTCGAG
TTCTTTTTCGCTTTTTTACAGGTTTCATAAATATAAAGGCTACCAGGATT
GGAAGAAATGGAGAAAAAAAACATCACCAATTGACATGAAAAGCTGTCAA
TCACACGCAGGTTCAAAAAGTACTTTTACACTTTTATACTAACTTTCCTG
TTTTGAAAGTGAATTTGTATTCACCCTTATTAGTAGCTTTTTTGGACTAA
AATTTCCATCTAAAGCTTGACGGAGTCTTGCTTTTATTTCCAGGATAGCA
GTTTTAGTACAGCAGTTTTTCCTAATATGTCTAATACTAAATAAGCATAC
TTGTTTCATTTTAGGTTGCTTTGATGGAAGTATTAGAAAAACGTGCGATT
GTTTGGCCTGAAGACTGGAAAGAAGACATTGTTGGCCTTTGTACATCATT
TTCTTCATACAGTGATGAATTGAAAGTGGCAAATGAGAATCAACAAAACA
GACAATCACAATTAAACCCTTCACGAGAGGTAAAAACTGAGAGATTATCA
CTTTTTCGTTCATTAAATAAAAAACTTGAGAAACTTATATATCAGTATCT
TTTTGAGCAGACCAGCTTTATATGCAAGAAATTGAAAGGGTTTTTTACAC
AGAACTTGAGTTCTGTGACCTTTTTTATATAAAGTTATAATTCTATTTAG
ATTTGAAAATGTGCTAACTTTCAATACTGGTCTCCCGTCCCACGAGACCA
TGTCAACAAAGATTTGGAAATTCTATCAAGCAAAGTGTCGGAATCAAATA
AAAACGAACCTTTTCTATTGTCAGAGGAACATTTTGATGAAACCATTCCA
CGATCTCGCCAATTAAAACGACTAAAGGAAATCGCGTTAGAAGTTCCATG
CATTTCTTTAAGGTAAGGAAAGGTTAAAAAGTATTCATTATTTTGTAACG
TTTTGTTGATTTTATTGCTCTCGTATGTACCTTTTTTTTTCTTCAAAATC
CTTTGCTAAAGGTAAGTAGAGGGCAAAAAGTAAGGAAATTAGATTTCTAT
GTTTTTAACTGTAGAAAAGCTTTTTGCAAACTGAGTTGCGAGTGAACTGG
TGTTTTTATTGAGTTGATATTTTTCTTTGTTATAAAGATCAATTTAATCT
TATTCTCTTCTTTTTGTTTACACTATTGCTTGACGTTTCAAAACGTTTTA
CCTATTTTATCAACATAAGTATTTTACAGCCCTGTATCATCAACCGTATC
AAAAGAAAAAACTTCTCAGAAAGTGGGATTTCAACGAGACAGGGTTTAGC
AAGTTAAGCTTGTTCTTGTTCTTGGCTTTGATTATTTTTTTTTAACATTC
AAAATGTTTCAATATTGAATTTCTTTATATATACGATCCTGGTGGTGTGG
TGGATCCAGCACTTTACTATTCATACAAAAAGTTGCCCCACTGGCTAATG
AAAACGAAAGAATGGACACTGTTACAAAAATGCTGAAAGCTGTAGAACCT
GAAATCCCTATCTACCATACTCGAGCAATGCGTAAACAGTTTCATGAAGA
AGTCAAGCTCATTAGTTCAAAAACTCCTGCACATGTCATAAGACATATCT
ACAAGACATTGACTGGGGATCTAAGTTCAGAACCAATATCCCAGGAAATT
GACGAGCGTGTACAGTTAGCCATTGAAACTGAAGATCCCGACCTGTTACT
TGATCTCCGTCATCTGAGCAAAGGAAGACCAGGGGACACTTTTGATATCT
TTTTTGCAGAATTGGAGAAAATGGTGGATGAAGTCACAGCTGCTGATGAC
CGGAGACATGGAGTTGTTCACATGAGCGAGTTCTTAAGTATCCATCACTT
GATTGAACAGGTGAAAAAGCGTGTAGAAAAATTCCCTCCCAAACAACAGT
AATACACGCTTTTGCCCCAACTAACATCCTCAAGAAAACTTCTCAGTATT
ACACTTGGCGCATCAAACTCAAACACGCTATTCAAAGAAGACAGTTACAT
GCCTTCCACACAGATGCACATTGGTGCTCCGCTCTTTACCGATACCTAAG
AGAGATGTCCATCGAGAACAGGGAGAAATGCATTTTCATCTCTTGTGATA
AGGCAAAAGTTGACTTTGGTGAGCCAGGAGCATTGGTTTCATATGGCGTA
CGTGGGAGAAAGAGCCCTATTTCAACCACATCCATGTTAGGTGCCCTCGA
TCATGATGTGAATCAAAAAGGTATACATTCTTTTTAAAGCGGCCAGAATG
AATTTTGAATGATTTTTATGGTCCTTTTTAAATTTTAAAGGAGAGATTAA
GCGATTTCGAAAATTGAGTTTAGATTCTTAAGCTTGAAAAAGAGTAATAC
ACCAATTCGGAAAAACGGCGCGTATTTTTGAAAAAAGACTGGGTAAGAGT
TTAGTGTGGTCGCAAAATCAAAGCATTGAAAAAACCTGTCATTGAAAACC
CACTTATCAGTGTGGATGATATGTTGATGATGTCGCAGTCAAAAAAGGTC
TTTTTTTGAAAATTTGAAGGCAAATGTCAGTGCAGCATCAGTTGCTACAA
TTGAATGTGGATAATCCATTTGTTGGTGCTAGCCCTGTTGGTATAATTTC
CTGTTCATGCCACGAAGATTTTTGTTTGGAGATAAAATGTCCTTCATCCA
TAAGTCATTAATCGCCAACCGATGAAAAAACAAAGTTGCCTTACATTAAA
GATTCTAAATTGAAAGACACTCATGGTTATTATTCCCAGTGCCAGCTACA
AATGGGTATAACTGGTTTGAAAAAATTGCTCCTTTTTAGTTTAAAAGTGC
TACTTTTTAGTTTATACAGAACATGGATATCTGATAGACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051070-exon-scaffold_193-1575043694:180569..181017 | TCONS_00051070-exon-scaffold_193-1575043694:180569..181017 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1575043694:180008..180096 | TCONS_00051070-exon-scaffold_193-1575043694:180008..180096 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1575043694:179639..179803 | TCONS_00051070-exon-scaffold_193-1575043694:179639..179803 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1575043694:177326..179467 | TCONS_00051070-exon-scaffold_193-1575043694:177326..179467 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1510915933:180569..181017 | TCONS_00051070-exon-scaffold_193-1510915933:180569..181017 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1510915933:180008..180096 | TCONS_00051070-exon-scaffold_193-1510915933:180008..180096 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1510915933:179639..179803 | TCONS_00051070-exon-scaffold_193-1510915933:179639..179803 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1510915933:177326..179467 | TCONS_00051070-exon-scaffold_193-1510915933:177326..179467 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1491911889:180569..181017 | TCONS_00051070-exon-scaffold_193-1491911889:180569..181017 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1491911889:180008..180096 | TCONS_00051070-exon-scaffold_193-1491911889:180008..180096 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1491911889:179639..179803 | TCONS_00051070-exon-scaffold_193-1491911889:179639..179803 | Clytia hemisphaerica | exon |
| TCONS_00051070-exon-scaffold_193-1491911889:177326..179467 | TCONS_00051070-exon-scaffold_193-1491911889:177326..179467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:177326..181017 - |
Blast
The following BLAST results are available for this feature:
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