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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054413 ID=TCONS_00054413|Name=TCONS_00054413|organism=Clytia hemisphaerica|type=transcript|length=2608bp GAAATtataagaaataagaattttaatcGAATTCTATATCAATTTTATAC GAATcggaaagattttaaaagtcaGTATCATAACCAAAAGAGCGTTTGCA CGGAAAGTTTTCTGGtcaattttggtattttttgaaaatgtgtgtGGTtt tatgaagaagaaaatgtctGCTACCATGTTGAAGATTTGGTTCTACACAT CCCTGCTACTTTTTGTCGCCGTTGCTTCAtcaaaagGCAACAAGAGACAT TTGGGTTTACCACACGATCTTCCAGACATTTTGAAGAACGATAAAGTTGA TGCAAATGATTTGAAATATGCAACAGACGATTTTCGTGTTGATACTCATC CGAATCAAGGAGTCATCATCGAAAGTGAAGGCGTCGGAGGACCTCATAAG AAAAGCCAAACCCTTCAGCCCAAAAAGAAGGGTAAAGAAATGACAGGAGT GAAGAAGCAATTTGGCACGGACTTAAACATGATGCCCGAATTACCGTTAG TTGGTCCACAACCGGAAGAACATCTTACCGTAGAACCTCCTGCACCGATC GAACCTATCGAGCCGGTACACCCGATTGAACCGGTACCGATAGAACCGAT GCCGGAACCAATCATATCACATGTATCTGAACCAGTCCCTATTATCCAAC AAGAGCCACCTCCAATTGTACACCACGAGGAACCTATCATTCATCATGAG CCTGTTCTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCTCCACCGCCACC GCCCTGCACCGTACATATCCCGGTTACCGTTCATTTGAAAGGAAAGCTTG CTATCAAGATGAAACATTGTCAGAAATGtgatttttcaaagaatatcgag TCTATTGGTCCTTTGAAAATCTCCTCTCTGAATCAATTAGAAGACAAACT AAAGGAACGTTTGGACAAATCGTTCAAAGTCAATGCTAAACGAGGAGGTA AAAAGAGAGGGAAATTACATAAAGCACATCACAAGAAATCAAAAGATATT AAAGGCACTAAACGTGATCACCCGCCTGTTATTGATTACGACCGCCTAGA CCGCGCGAACGAACGCTTCATTTTTGGTAGCGATGGCGAGGAGGGCGAGG AAACTGACGTTCAAGGGAGCAAGAAAGATCAAGTGGATGAACCAGGACAA GACGCTTTCTTCAGGAAAGCTGTCaacattccaaagGTGTTTATCCCATC AGCTGCTTACAAACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCA TGTTGAAATGTGTTGTCCCCaaagatgaaaacaaaaaatcttctaaaaaa gaaaagatagatGACAATTCATCTTTTATTTCGTTTATTACCAAGCCAAC TGAAGCTCCAGCAGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATT TTTCTAACAATGTGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGC TTCACCAAAACAGCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGT TAGTGGTGTAACCAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAG ACGTAACCGATACTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCA GCTGAAGCGGCGCCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATC AGCTATACAAAATATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGG CCGGTGTGACACAACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAA CCGTCACCtgaaacacaaaacaaaaaatttgctgATAATTTTATGAAAGT CTTGGATAAAGATATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATA TTATGAGTGAACTGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCA CCTTCAATGACTGAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAG CAATGAACGAACAGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTT TGATTGCACCACCAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTA AAGAGATCGGAAACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCG TCCAAAGATTCGTGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAG CTGATGAAAGCGGATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGAT GATCATGAGAAAGATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTT CATGAAAGGGGCTTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAG CTCCATATCAAAACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCA ATCGAAGTCGGTCAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGG TAAATTACCCAGGGTTCCActcaaaattactttaaatCCCAAAGGACCGT TAGCCAAgctgaaagaaccaatcacgaTTGATTTGAAACCTCCAGATGGT AAACGATCAAACTCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGC AGTGACTATCGCAGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAG ACCAAAAC Run BLAST on NCBI transcript from alignment at scaffold_242:1547742..1554093- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054413 ID=TCONS_00054413|Name=TCONS_00054413|organism=Clytia hemisphaerica|type=transcript|length=6352bp|location=Sequence derived from alignment at scaffold_242:1547742..1554093- (Clytia hemisphaerica) GAAATTATAAGAAATAAGAATTTTAATCGAATTCTATATCAATTTTATAC
GAATCGGAAAGATTTTAAAAGTCAGTATCATAACCAAAAGAGCGTTTGCA
CGGAAAGTTTTCTGGTCAATTTTGGTATTTTTTGAAAATGTGTGTGGTTT
TATGAAGAAGAAAATGTCTGCTACCATGTTGAAGGTGAGGTCAAACTTTT
GTTTTCTTTTGTTTTCTTTTGTTCTTGCTATATATTTGTGGTACGTTTTG
TTTGGAGCTCTCGCATGGAAACGAAACACTAATAAAATTGTCAAATTTTA
TGTGATTATCTTCCTGACTTAAATCCAACTATCCGAAAATTACCTCTCCT
ACGTCCTAGATAGAAACTTTTCGTGTGTTCATGATAAAGCTATGCACATG
TTGTTCTAGCTGTGTAAGAAAGCACAAAAATATGTTGATACCAATATACT
ATCTCCCCTTGTGGGTAATCTCTGTGCCAGGGCGAATCTTACGTAAAACG
TACCGTGGGGAAGGGGGTTGTACTTTTGCGGTGTAAAGGGATTGGCCCTT
TTTTAGTATGGTATTACGGGACTTGACAAAAAAGAGACGGGAAAACAGAT
TTCCATAGATATTGGGTCTCTGGCCCTGGCAGTGTTCTTTTTTACATACC
TACACTCTGTTCCGTTCTCAAAAGGAAAGTATAATTAATACACCATGCGA
TTCCTACTTTTAGATTTGGTTCTACACATCCCTGCTACTTTTTGTCGCCG
TTGCTTCATCAAAAGGTAATTATTTTCAATTTGGGCTAAAGTCCTCAGGA
TCTCAGGATCTCAAAAGCTCATAATTCGTATTCCAATAAGGCTGAGAATA
TAGCCTAGAAGCCACTGAACCCCTCCAAAATCGAAATATCCAATGAAATA
AAGTGGAACTAGCCGACTGATAGTGTGAAGGTTTCGATCACAAACTTACA
CTGCAATGGACTGTGTTCGAATCCCAAGCACTTTCAGGCAGGGTGCTAGG
GGAATATGGTGATAGACTCTCACTCATTAAGTGGAATTACTAAATTGGCA
ATTCTCACCCGAACTTTAAATTCTGAGCAACGTTAAAATGCACAAAATTC
TCAATATATTTTGACCAAGATTGCAGAAACAATACATTTAAGTTTTTTAT
TATCAGGCAACAAGAGACATTTGGGTTTACCACACGATCTTCCAGACATT
TTGAAGAACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAGACGA
TTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATCGAAAGTGAAG
GCGTCGGAGGGCCTCATAAGAAAAGCCAAACTCAAAAGTTAAAAGGTTTA
TCCATGTTTTTGTTTAACCCTTTAACTGCAGTTACTTGTTTGCTACCAAA
CTGAGGTCGTGCGCAGACCAGGGAGATACTAGGATTCAGAGCTGACGGGT
GCGTGTCGCCCGACTTCTGCCGCGCCTACTTCGCCGACCATAAAATGCTG
AGTGGGTAGTGGCCTTTAGTGAGACTAAAAAGTAGGGAAACCTTTGTGAA
ATTTACAACCCTGCTTGGGACTAATTTGACCTAATTTTGATCTTTCAAGG
AGCAAATCCTTGAAATTTTCCGATTTCTCCGACCCTTAGTGGGACTGAGA
TTTAATTTTCTGACCTTCTCAATCTTAATAGGAACTGCCAGGTTCCAAAA
AGACACCCTTAAGGATGGCACATACCTGTACCCTTCACTTGCCTTGGAAC
CCCTCTGGGCTCAGCTATGCGTGTTGGCACATTATCATATGTAGGTCTTC
AAGTTCCGTTTGCGTATGTGTGGTTTTTTGACAAGCCTCCACTATCTAGA
TTAAAGGACCACCCCCGTAACAGAATATCTTTCTTTTTATTTCTTTCGTA
GAAATCACAGGCAACAAGAGACATTTTGGAATGCCACACGATCTTCCAAA
TATTTTGAAGAACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAG
ACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATAGAAAGT
GAAGGTGTCGGAGGACCTCATAAGAAAAGCCAAACTCGGAAATCAAAAGG
TACGTTTTTCTGTAGTTTGTTTTGGCTTTCGTACAGTGTCCTCTTTTTAT
GGAACATTAGACGCTTCCTGGTCTAGGATGGGCGGAAAATCTGGTGGCTC
AAATAGTGATTACCTGAAGGCGTTTTAAAGCATCGGCCCGTAAAAACTTA
AAATGTTATCAATCGCGTGTGAATGTGAGTATTTTGTTGAAATTCCACGA
TCTATAAGTTCAAAGACCCTAAAATCCATCGAATCATCACAGAATACGGT
CAAAGAAAAATTACTTTGATAATATCTGCGAAATTGGTTTAACCTCGACT
TTCCAACTAATATCTGAATCCTTTCTTTAAATTCAAAATTTAACTTTTTG
GCTATTTTGTAGATGTCACGTTCAACAAGAGACATTTGGGAATGCCTCAC
GATCTTCCAGACATTTTGAAAAACGATAAAGTTGATGCAAATGATTTGAA
ATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCA
TCATTGAAAGTGAAGGCGTCGGAGGGTCTCATAAGAAAAGCCAAACTCAA
GAATCAAAAGGTATTTTCACATCTTTTTGTCGTTTATTTTGGCTTTCGTT
TTAGAAGATTAGCTAGTTCGCACTTTGAAACTGCTATTTTTGATACCGCC
TGATAAAGGACGGGCAGGAAAAGCGGTAAAAGCGGTAAAAGTTATAATAT
TATCGGTCGTGTGTGTATGTGGGTATTTTGTTAAAGCTCGAGGCTCGAAA
TTCGAGAATCCTAAAATCTCTATCCAATTTTCATCGAATTTGGTCAGAGA
ACAATTACTTTCATTATGGTCTTTGTGAATTTTGTTTAACCTCAACTTTC
CGTCATAGTATCTAAATCCTTTATACTATTTCCAGATTTTTCCTCTTTGA
CCGTTCTTTTTCGTAGACGCAACGTTTGACAAGAGACAGTTGGGCTCGCC
ACGTGATCTTCCAGACATTTTGAAGAACGATAAAGTTGATGCAAATGATT
TGAAATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGA
GTCATCATCGAAAGTGAAGGCGTCGGAGGACCTCATAAGAAAAGCCAAAC
CCTTCAGCCCAAAAAGAAGGGTAAGTTTACATTTCTTTAACGACAGACGT
TCGTAGTGCTAAAACACTGAAGAACATGCTTTCAAAATGCTTGTCTGAAA
GATTCTAGCATCAGGTTCAAATTTCTGGCCAGATGATTGGAGAAATTGTT
CTCGAAACGTAGCCGAAAGTAACTCTCGTGATTCAAGTCGTGCTAAACCT
TCAATATAGATATTAGCTCTGTCTTCTAAAATAAGTACCATTTAATTTCG
CGATTTAGCCATTTTGGTGTGTTTCGCGGAATTTAATTTCGCGAATTACG
CCCAAATTCGCGAAATTAAATTCCGCGAAAATTTCTTCCGCAAAAATTTC
TTCCCTTAAGGTAATAGTTATCGGACAATTGCGAGTACAATATGAGAAAT
ATTTTACGAGTTCCGAGATTTTTCCGTATAATATTTTCCGAGTCTTTAGA
GGAGGAAAATATACGGAAAATCTGGAACGCGTGAAATAATTCTATATTGT
ACGAGCAATAGACGATATCGGCTTAACGAAATTCTCTCCGAATGATTACC
CATGATGCATTGCGCAAAAAAATTCAGTAAGTCAATATTGTCCGTGAATT
TTTTTGCGCAATGCATTATGGGTAATCATTCGGGGAGAATTCAGAAAGCC
GATATCGTCTATTGTCTAATAACTATTTTTCTATGACCTTAGGTAAAGAA
ATGACAGGAGTGAAGAAGCAATTTGGCACGGACTTAAACATGATGCCCGA
ATTACCGTTAGTTGGTCCACAACCGGAAGAACATCTTACCGTAGAACCTC
CTGCACCGATCGAACCTATCGAGCCGGTACACCCGATTGAACCGGTACCG
ATAGAACCGATGCCGGAACCAATCATATCACATGTATCTGAACCAGTCCC
TATTATCCAACAAGAGCCACCTCCAATTGTACACCACGAGGAACCTATCA
TTCATCATGAGCCTGTTCTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCT
CCACCGCCACCGCCCTGCACCGTACATATCCCGGTTACCGTTCATTTGAA
AGGAAAGCTTGCTATCAAGATGAAACATTGTCAGAAATGTGATTTTTCAA
AGAATATCGAGTCTATTGGTCCTTTGAAAATCTCCTCTCTGAATCAATTA
GAAGACAAACTAAAGGAACGTTTGGACAAATCGTTCAAAGTCAATGCTAA
ACGAGGAGGTAAAAAGAGAGGGAAATTACATAAAGCACATCACAAGAAAT
CAAAAGATATTAAAGGCACTAAACGTGATCACCCGCCTGTTATTGATTAC
GACCGCCTAGACCGCGCGAACGAACGCTTCATTTTTGGTAGCGATGGCGA
GGAGGGCGAGGAAACTGACGTTCAAGGGAGCAAGAAAGATCAAGTGGATG
AACCAGGACAAGACGCTTTCTTCAGGAAAGCTGTCAACATTCCAAAGGTA
TTTCTACCTTATACATACTTTTTGTCTTCGGCTTAAGTTTGCTTTCACCC
ACTGGAACCTTAGTAATTCAAACTAATCATAACTCGTTGGATAGATTGTT
TTCCTTAAATTTCCAGTTATCATGGTCTTTGTGCGAAGAGCTTACGATTT
CAGAATTTATGCGTATTTAGACCTGTAAGTGTAGGATCTAGTCAGATAAA
TTTTAGCCTTCTAGGGCGTCATGATTTTCTTGATATTGATTACTATGTAG
TTTCATCACTTATCTGATTATTTATTTCAGGTGTTTATCCCATCAGCTGC
TTACAAACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCATGTTGA
AATGTGTTGTCCCCAAAGATGAAAACAAAAAATCTTCTAAAAAAGAAAAG
ATAGATGACAATTCATCTTTTATTTCGTTTATTACCAAGCCAACTGAAGC
TCCAGCAGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATTTTTCTA
ACAATGTGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGCTTCACC
AAAACAGCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGTTAGTGG
TGTAACCAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAGACGTAA
CCGATACTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCAGCTGAA
GCGGCGCCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATCAGCTAT
ACAAAATATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGGCCGGTG
TGACACAACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAACCGTCA
CCTGAAACACAAAACAAAAAATTTGCTGATAATTTTATGAAAGTCTTGGA
TAAAGATATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATATTATGA
GTGAACTGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCACCTTCA
ATGACTGAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAGCAATGA
ACGAACAGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTTTGATTG
CACCACCAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTAAAGAGA
TCGGAAACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCGTCCAAA
GATTCGTGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAGCTGATG
AAAGCGGATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGATGATCAT
GAGAAAGATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTTCATGAA
AGGGGCTTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAGCTCCAT
ATCAAAACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCAATCGAA
GTCGGTCAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGGTAAATT
ACCCAGGGTTCCACTCAAAATTACTTTAAATCCCAAAGGACCGTTAGCCA
AGCTGAAAGAACCAATCACGATTGATTTGAAACCTCCAGATGGTAAACGA
TCAAACTCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGCAGTGAC
TATCGCAGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAGACCAAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054413-exon-scaffold_242-1575043694:1553910..1554093 | TCONS_00054413-exon-scaffold_242-1575043694:1553910..1554093 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1575043694:1553329..1553380 | TCONS_00054413-exon-scaffold_242-1575043694:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1575043694:1552897..1552937 | TCONS_00054413-exon-scaffold_242-1575043694:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1575043694:1550874..1551027 | TCONS_00054413-exon-scaffold_242-1575043694:1550874..1551027 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1575043694:1549447..1550201 | TCONS_00054413-exon-scaffold_242-1575043694:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1575043694:1547742..1549163 | TCONS_00054413-exon-scaffold_242-1575043694:1547742..1549163 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1510915933:1553910..1554093 | TCONS_00054413-exon-scaffold_242-1510915933:1553910..1554093 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1510915933:1553329..1553380 | TCONS_00054413-exon-scaffold_242-1510915933:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1510915933:1552897..1552937 | TCONS_00054413-exon-scaffold_242-1510915933:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1510915933:1550874..1551027 | TCONS_00054413-exon-scaffold_242-1510915933:1550874..1551027 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1510915933:1549447..1550201 | TCONS_00054413-exon-scaffold_242-1510915933:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1510915933:1547742..1549163 | TCONS_00054413-exon-scaffold_242-1510915933:1547742..1549163 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1491911889:1553910..1554093 | TCONS_00054413-exon-scaffold_242-1491911889:1553910..1554093 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1491911889:1553329..1553380 | TCONS_00054413-exon-scaffold_242-1491911889:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1491911889:1552897..1552937 | TCONS_00054413-exon-scaffold_242-1491911889:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1491911889:1550874..1551027 | TCONS_00054413-exon-scaffold_242-1491911889:1550874..1551027 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1491911889:1549447..1550201 | TCONS_00054413-exon-scaffold_242-1491911889:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054413-exon-scaffold_242-1491911889:1547742..1549163 | TCONS_00054413-exon-scaffold_242-1491911889:1547742..1549163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_242 | supercontig | scaffold_242:1547742..1554093 - |
Blast
The following BLAST results are available for this feature:
|