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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051061 ID=TCONS_00051061|Name=TCONS_00051061|organism=Clytia hemisphaerica|type=transcript|length=1126bp
GGTTATAATATTATTCCTTTGACCAAATAGCTCCAAAAATATATAGACGA
CCCGATATCTAATCTAAAATTCGGATAACATTTACCTTCCGTCTAAGCAA
AGCCCTTTANCCCGATATCTAATCTAAAATTCGGATAACATTTACCTTCC
GTCCAAGCAAAGCCCTTTAGGGAGTTACTGTTGTGAAAGTCAAATGTAGT
TGGGATCCTcccaaatttcttttaaattttagggTAAGGGATTCAAGAAT
TCTTTATGATTCCTCCTAATCCAATTTATTTGTCTACGATATAGTAATTT
GAGATAATAATAGAATTTGATGACAAATTATAGTAAGAATCAATGAAACA
TTCACTAACTATTCTGCAGTTACTTTGGACTCAAAGTGAATTCAATCAAA
TCATCAGCCGTATATCCAGTTGCCTTATGatccaaaataatcaaatatcC
TTCTTCACTTAAATGAACATTTTGTGAAACAGAGTATTTGTAACCATTTG
GATAATGCATTTCTTTATTAAAGTAAATCTCCGTCAAGGTGCTTTTACAA
TCCGGGTTAATTTTGTACGACAAGCTAAACTCTTTTGTATCTTTgttgaa
atgataattttgaatGTTACCAGCAACTGCTTGAGGATAAGTACGACTTG
TGTTTTGAACAACGATTTCACCAGGTCCTCCAGAGTGATTTGTGGAGTTT
TCACAGGCTAGATTCATCTTGATACAACCATAAGGTTTATACATCCATCC
TTGCCAGCTTTGTTTGTATTTATCAGCTAAGTCTAGCATTTCATACATAC
CCTCAAAGTCTTTTCCAACAGTGTACATTTCCGATAAAAATcctccacat
tttaaacgttttaaatcGTTCATACGTGCAGCGAAACTCAAGGTTTTGGA
GAAATCTGGTGGTTCATAATAGTGGTAACTCAATACACTTCTGTTTTGAT
ATTCAGCACCTCCTGGTACTTTTGAGAATCCGACATCAAAGAAATCCCAA
GTGACTCCTTCAAAGAAGATTGCATGTTGATCATCAACTTGACGAATAGC
ATTTTGTAAAACATCATATGCAGGTTCAAGGTTCAATTTGTCAGCGATGC
CAGGTACCAACAACAGAGGATTCCTA Run BLAST on NCBI transcript from alignment at scaffold_193:315304..317777+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051061 ID=TCONS_00051061|Name=TCONS_00051061|organism=Clytia hemisphaerica|type=transcript|length=2474bp|location=Sequence derived from alignment at scaffold_193:315304..317777+ (Clytia hemisphaerica)
GGTTATAATATTATTCCTTTGACCAAATAGCTCCAAAAATATATAGACGA
CCCGATATCTAATCTAAAATTCGGATAACATTTACCTTCCGTCTAAGCAA
AGCCCTTTANCCCGATATCTAATCTAAAATTCGGATAACATTTACCTTCC
GTCCAAGCAAAGCCCTTTAGGGAGTTACTGTTGTGAAAGTCAAATGTAGT
TGGGATCCTcccaaatttcttttaaattttagggTAAGGGATTCAAGAAT
TCTTTATGATTCCTCCTAATCCAATTTATTTGTCTACGATATAGTAATTT
GAGATAATAATAGAATTTGATGACAAATTATAGTAAGAATCAATGAAACA
TTCACTAACTATTCTGCAGTTACTTTGGACTCAAAGTGAATTCAATCAAA
TCATCAGCCGTATATCCAGTTGCCTTATGatccaaaataatcaaatatcC
TTCTTCACTTAAATGAACATTTTGTGAAACAGAGTATTTGTAACCATTTG
GATAATGCATTTCTTTATTAAAGTAAATCTCCGTCAAGGTGCTTTTACAA
TCCGGGTTAATTTTGTACGACAAGCTAAACTCTTTTGTATCTTTgttgaa
atgataattttgaatGTTACCAGCAACTGCTTGAGGATAAGTACGACTTG
TGTTTTGAACAACGATTTCACCAGGTCCTCCAGAGTGATTTGTGGAGTTT
TCACAGGCTAGATTCATCTTGATACAACCATAAGGTTTATACATCCATCC
TTGCCAGCTTTGTTTGTATTTATCAGCTAAGTCTAGCATTTCATACATAC
CCTCAAAGTCTTTTCCAACAGTGTACATTTCCGATAAAAATcctccacat
tttaaacgttttaaatcGTTCATACGTGCAGCGAAACTCAAGGTTTTGGA
GAAATCTGGTGGTTCATAATAGTGGTAACTCAATACACTTCTGTTTTGAT
ATTCAGCACCTCCTGGTACTTTTGAGAATCCGACATCAAAGAAATCCCAA
GTGACTCCTTCAAAGAAGATTGCATGTTGATCATCAACTTGACGAATAGC
ATTTTGTAAAACATCATATGCAGGTTCAAGGTTCAATTTGTCAGCGATAC
CAGGTACCAATAACAAAGGATTCCTAAAGATAAAAACAGTTTAGATAAAT
AGATGAATTAAAGATCTCTAAGTCTAGTATGAAGGCATATAATCATAAGC
TATGAAACTCAACTTGAAAAACATTCAAGGTTTTTAGGGAACTCTATGTA
CTTAAAAAGTAAGCAACTACAACTTAAGATAGTTTCTTTGGAATCATCAA
AATATCAAATCAAGTTCTTTGTTTAGATACATTTTCCATGATTACTCATA
TTGGCGTTTTATAAACCCATGTTATGAATGAAGTAATAAttatttatcaa
ttttaatCTTTAGGAGCTACTACAGTATATCTACAAAATTAtcgtttttt
aataaaataaattattaaagatctatcttataaaaaaatttgttaaatct
ataaatctaaaaattgaaaattatatataaaaaacaaatcaattccTAAA
CGACTTTCATATATTATAAAGTATATCTGTAATCAAAATATTATTGttaa
aattatatcaaaaattTACCTAGAAATCTTACTAAAGTAAATGGAAGAGT
TTGCTTTGATTTAAGTTGTTAGAACTGTTTTTCCATCCAAGCAAAGTTTT
GTGGCAGAATTATCGTATAATTTCTCTGAAGTTTATTTAGGGTTCATTGT
AAACGAAATAAGGTCTCCTGCGTTTAAAGCACCATCGTGGTTCAATAATA
TTAGGAAGCCATTATCACTAACCGTCATCTGAATATGGTCAGCAGGTGTC
AATTTATATTCAAAGTCATTTGGGTAATGCATTTCCTTGTTGAAGTAAAT
CTCTGTCAAGGTGCTTTTACAATTCGGTTTGATTTTGTAAGACAAGCTAA
ACTCTTTTGTATCTTTgttgaaatgataattttgaatGTTACCAGCAACT
GCTTGAGGATAAGTACGACTTGTGTTTTGAACCAAGACATCCGAAGAGTC
TGTACCGTTGCTGTTTTCTGGGTAAGATTTGTACAACCAACCATGCCAGC
TTTGTTTATATTGATCAGCAAAATCCATAATCTCAAACATATTCTTGAAT
TTATCAGCTGTACCGACTGTTAAGAGCTCTGTCAAAAAGCCTCCACATTT
CAAACGTTTGAGATCCTGCATCCTAGCAGCAAAATCTAGGGTTTTCGAGA
AATCTGGTGGTTCATAATAATGGTAACTCAATACACTTCTGTTTTGATAT
TCAGCACCCCCTGGAACTTTTGAGAATCCAACTTCAAAGAAATCCCAAGT
GACTCCTTCAAAGAAGATTGCATGTTGATCATCAACTTGACGAATAGCTT
TTTGCAAAACATCGTATGCAGGTTCAAGGTTCAATTTGTCAGCGATGCCA
GGTACCAACAACAGAGGATTCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051061-exon-scaffold_193-1491911889:315304..316376 | TCONS_00051061-exon-scaffold_193-1491911889:315304..316376 | Clytia hemisphaerica | exon |
| TCONS_00051061-exon-scaffold_193-1510915933:315304..316376 | TCONS_00051061-exon-scaffold_193-1510915933:315304..316376 | Clytia hemisphaerica | exon |
| TCONS_00051061-exon-scaffold_193-1575043694:315304..316376 | TCONS_00051061-exon-scaffold_193-1575043694:315304..316376 | Clytia hemisphaerica | exon |
| TCONS_00051061-exon-scaffold_193-1491911889:317725..317777 | TCONS_00051061-exon-scaffold_193-1491911889:317725..317777 | Clytia hemisphaerica | exon |
| TCONS_00051061-exon-scaffold_193-1510915933:317725..317777 | TCONS_00051061-exon-scaffold_193-1510915933:317725..317777 | Clytia hemisphaerica | exon |
| TCONS_00051061-exon-scaffold_193-1575043694:317725..317777 | TCONS_00051061-exon-scaffold_193-1575043694:317725..317777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:315304..317777 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001547 | Glyco_hydro_5 |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
The following BLAST results are available for this feature:
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