TCONS_00051109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051109
Unique NameTCONS_00051109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051109 ID=TCONS_00051109|Name=TCONS_00051109|organism=Clytia hemisphaerica|type=transcript|length=851bp
TCAGTGTCCATATCTTTGCCACAAGATTCAACATGGAATGTTAAATCTTG
AAGGGAAAACTCCTGACCGCATTCAAAACATTTCTCTTTCAAAATGGAAA
CTTCTTCATCATTCTTTAATGGTATCACCGAAAGAGATTTCTGTATTGGC
CTCAAAAAGATTTTCCCTTGCCTAATACACAACTTTAAAGATCAGACATT
TAAAGGACAATTCAAGTTAACCAACGTTTTAGAGTTTGGTTCCACCTTCA
TTGGTTGAAAACCACCTGGAGCCTTTAATGCTGGAAAACCAATAGTCTGC
CAATCATTGTCTTTCTCCTCAGACATAATAGCTTGGTAAATAATAGTTTC
ATCATGCTGCTCAATATCAAGTTTAATTCTTTTCAATCCTAACCCAGCAT
TCAGAAGGGTAACTCTTTCGGTTGGACAAGGTATGCTTGTAGAAAACTTG
TCGGCCAGACAAAAAAACTGGGCCGACCAAGTCCTTTTCTTTGGTGCTTT
CTTatctttttgttgctttttgttTCTAGTGGTTGCACTTGGATATGGGG
CAAAAAGATCTCGCCGTTCTTGTCTTATCCTGGACATTGTAGTGTTTTTA
CAGAGTTCTTTCAATTTAACTCGATCCCCAAGCTTTTTAACACCAAGGTG
TTTAAGGTCTTCATGAGAAGCCGAAGTTATGACATTAGCATCGACCTTTT
CATCTTTGAACTTTTGTACTAGATGTGCCAAACCTAATTAATAATTGGCC
AAAGCTTCTtccatttttatttgtttgtctAAAAAAAGCAATAGTTACAT
atattaccttaagtggataaattttcgcgtggattaattttcgcgatttt
c
Run BLAST on NCBI

protein sequence of TCONS_00051109-protein

>TCONS_00051109-protein ID=TCONS_00051109-protein|Name=TCONS_00051109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MSRIRQERRDLFAPYPSATTRNKKQQKDKKAPKKRTWSAQFFCLADKFST
SIPCPTERVTLLNAGLGLKRIKLDIEQHDETIIYQAIMSEEKDNDWQTIG
FPALKAPGGFQPMKVEPNSKTLVNLNCPLNV
Run BLAST on NCBI

transcript from alignment at scaffold_197:1..851+

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051109 ID=TCONS_00051109|Name=TCONS_00051109|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at scaffold_197:1..851+ (Clytia hemisphaerica)
TCAGTGTCCATATCTTTGCCACAAGATTCAACATGGAATGTTAAATCTTG
AAGGGAAAACTCCTGACCGCATTCAAAACATTTCTCTTTCAAAATGGAAA
CTTCTTCATCATTCTTTAATGGTATCACCGAAAGAGATTTCTGTATTGGC
CTCAAAAAGATTTTCCCTTGCCTAATACACAACTTTAAAGATCAGACATT
TAAAGGACAATTCAAGTTAACCAACGTTTTAGAGTTTGGTTCCACCTTCA
TTGGTTGAAAACCACCTGGAGCCTTTAATGCTGGAAAACCAATAGTCTGC
CAATCATTGTCTTTCTCCTCAGACATAATAGCTTGGTAAATAATAGTTTC
ATCATGCTGCTCAATATCAAGTTTAATTCTTTTCAATCCTAACCCAGCAT
TCAGAAGGGTAACTCTTTCGGTTGGACAAGGTATGCTTGTAGAAAACTTG
TCGGCCAGACAAAAAAACTGGGCCGACCAAGTCCTTTTCTTTGGTGCTTT
CTTatctttttgttgctttttgttTCTAGTGGTTGCACTTGGATATGGGG
CAAAAAGATCTCGCCGTTCTTGTCTTATCCTGGACATTGTAGTGTTTTTA
CAGAGTTCTTTCAATTTAACTCGATCCCCAAGCTTTTTAACACCAAGGTG
TTTAAGGTCTTCATGAGAAGCCGAAGTTATGACATTAGCATCGACCTTTT
CATCTTTGAACTTTTGTACTAGATGTGCCAAACCTAATTAATAATTGGCC
AAAGCTTCTtccatttttatttgtttgtctAAAAAAAGCAATAGTTACAT
atattaccttaagtggataaattttcgcgtggattaattttcgcgatttt
c

Coding sequence (CDS) from alignment at scaffold_197:1..851+

>TCONS_00051109 ID=TCONS_00051109|Name=TCONS_00051109|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_197:1..851+ (Clytia hemisphaerica)
TCAGACATTTAAAGGACAATTCAAGTTAACCAACGTTTTAGAGTTTGGTT
CCACCTTCATTGGTTGAAAACCACCTGGAGCCTTTAATGCTGGAAAACCA
ATAGTCTGCCAATCATTGTCTTTCTCCTCAGACATAATAGCTTGGTAAAT
AATAGTTTCATCATGCTGCTCAATATCAAGTTTAATTCTTTTCAATCCTA
ACCCAGCATTCAGAAGGGTAACTCTTTCGGTTGGACAAGGTATGCTTGTA
GAAAACTTGTCGGCCAGACAAAAAAACTGGGCCGACCAAGTCCTTTTCTT
TGGTGCTTTCTTatctttttgttgctttttgttTCTAGTGGTTGCACTTG
GATATGGGGCAAAAAGATCTCGCCGTTCTTGTCTTATCCTGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032401XLOC_032401Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051109-proteinTCONS_00051109-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051109-exon-scaffold_197-1491911889:1..851TCONS_00051109-exon-scaffold_197-1491911889:1..851Clytia hemisphaericaexon
TCONS_00051109-exon-scaffold_197-1510915933:1..851TCONS_00051109-exon-scaffold_197-1510915933:1..851Clytia hemisphaericaexon
TCONS_00051109-exon-scaffold_197-1575043694:1..851TCONS_00051109-exon-scaffold_197-1575043694:1..851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:1..851 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.814523	1.58723	1.31597	0.912026	12.066	7.0184	5.74951	5.68633	5.12419	5.2667	7.07291	4.59714	3.08879	2.58257	1.57857	1.73633	2.63189	2.08928	1.81995	3.37482	2.67361	2.36739	0.916446	1.70393	15.2966	10.0253	4.83771	3.85589	3.48805	1.97453
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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